Wall clock time and date at job start Mon Mar 30 2020 02:00:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46499 * 119.99916 * 2 1 4 4 C 1.50706 * 109.46712 * 269.99997 * 3 2 1 5 5 H 1.07996 * 119.99808 * 359.97438 * 4 3 2 6 6 C 1.37872 * 119.99646 * 180.02562 * 4 3 2 7 7 N 1.31518 * 119.99769 * 179.97438 * 6 4 3 8 8 Si 1.86803 * 120.00476 * 359.97438 * 6 4 3 9 9 H 1.48503 * 109.46703 * 89.99914 * 8 6 4 10 10 H 1.48496 * 109.47376 * 210.00274 * 8 6 4 11 11 H 1.48499 * 109.46624 * 330.00526 * 8 6 4 12 12 C 1.34777 * 120.00019 * 179.97438 * 2 1 3 13 13 O 1.21588 * 119.99759 * 180.02562 * 12 2 1 14 14 N 1.34773 * 119.99761 * 0.02562 * 12 2 1 15 15 C 1.39954 * 119.99722 * 174.63720 * 14 12 2 16 16 C 1.38939 * 120.03723 * 145.19399 * 15 14 12 17 17 C 1.38129 * 120.07085 * 180.22919 * 16 15 14 18 18 C 1.38183 * 120.14183 * 359.49275 * 17 16 15 19 19 C 1.38903 * 120.06488 * 0.50418 * 18 17 16 20 20 N 1.39922 * 120.03484 * 179.77167 * 19 18 17 21 21 C 1.34775 * 120.00366 * 34.78646 * 20 19 18 22 22 O 1.21289 * 119.99460 * 5.30023 * 21 20 19 23 23 C 1.38713 * 120.03305 * 325.16805 * 15 14 12 24 24 H 1.09003 * 109.47330 * 270.00345 * 1 2 3 25 25 H 1.08998 * 109.47138 * 30.00172 * 1 2 3 26 26 H 1.09000 * 109.46676 * 150.00419 * 1 2 3 27 27 H 1.08996 * 109.47120 * 29.99286 * 3 2 1 28 28 H 1.08998 * 109.47278 * 149.99690 * 3 2 1 29 29 H 0.96998 * 120.00173 * 179.97438 * 7 6 4 30 30 H 0.96997 * 120.00877 * 354.63670 * 14 12 2 31 31 H 1.08004 * 119.95874 * 359.95033 * 16 15 14 32 32 H 1.08001 * 119.93115 * 179.73737 * 17 16 15 33 33 H 1.07999 * 119.97043 * 180.24981 * 18 17 16 34 34 H 0.97009 * 119.99990 * 214.79241 * 20 19 18 35 35 H 1.08003 * 120.00301 * 185.30298 * 21 20 19 36 36 H 1.08008 * 120.07265 * 0.02562 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7037 -1.4209 5 1 2.0981 1.0956 -2.2417 6 6 3.1268 2.8773 -1.6728 7 7 3.3464 3.2567 -2.9128 8 14 3.7338 3.9287 -0.2531 9 1 5.1070 3.5068 0.1235 10 1 3.7497 5.3553 -0.6650 11 1 2.8273 3.7596 0.9109 12 6 2.1389 -1.1672 0.0005 13 8 3.3548 -1.1671 0.0010 14 7 1.4650 -2.3343 0.0005 15 6 2.1603 -3.5437 -0.1122 16 6 1.7076 -4.6716 0.5613 17 6 2.3959 -5.8643 0.4543 18 6 3.5304 -5.9428 -0.3308 19 6 3.9880 -4.8189 -1.0066 20 7 5.1396 -4.8979 -1.7976 21 6 5.4126 -6.0279 -2.4795 22 8 4.6138 -6.9406 -2.4852 23 6 3.3017 -3.6178 -0.8969 24 1 -0.3634 0.0001 1.0277 25 1 -0.3633 0.8900 -0.5139 26 1 -0.3633 -0.8900 -0.5138 27 1 1.6084 2.0284 0.5137 28 1 3.1499 1.1385 0.5139 29 1 3.8233 4.0826 -3.0902 30 1 0.4982 -2.3363 0.0787 31 1 0.8192 -4.6143 1.1727 32 1 2.0444 -6.7385 0.9821 33 1 4.0641 -6.8779 -0.4157 34 1 5.7415 -4.1393 -1.8550 35 1 6.3425 -6.1206 -3.0208 36 1 3.6556 -2.7425 -1.4215 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001467441712.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:10 Heat of formation + Delta-G solvation = -15.113381 kcal Electronic energy + Delta-G solvation = -20952.970130 eV Core-core repulsion = 17631.156080 eV Total energy + Delta-G solvation = -3321.814050 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.58386 -39.74543 -38.04231 -35.36350 -34.90197 -33.90472 -32.50511 -30.02407 -29.33996 -28.11520 -25.98356 -23.75212 -23.34448 -22.11204 -20.86260 -19.52934 -18.50514 -17.72013 -17.15359 -16.99960 -16.15064 -15.69820 -15.24248 -14.92014 -14.69655 -14.21336 -14.08544 -13.62788 -13.46065 -13.43031 -12.94382 -12.52236 -12.45341 -12.10922 -11.92033 -11.54110 -11.40449 -10.99380 -10.65575 -10.55932 -10.21963 -10.06687 -9.80656 -9.63470 -9.41442 -8.62633 -8.24579 -7.95588 -7.63900 -6.12343 -4.11463 1.33687 1.54770 2.56828 3.00897 3.20428 3.27067 3.33053 3.34894 3.63723 4.05547 4.34796 4.37192 4.74982 5.04664 5.20115 5.25047 5.37284 5.41113 5.57939 5.60897 5.72906 5.79555 6.02762 6.27659 6.32769 6.46898 6.54057 6.61497 6.72932 6.84344 7.17878 7.23779 7.32580 7.43561 7.57783 7.96322 8.39010 8.43560 8.90479 9.08327 9.47719 11.01012 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.021516 B = 0.004445 C = 0.003907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.021995 B = 6298.378571 C = 7165.610561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.607 5.607 3 C 0.230 3.770 4 C -0.530 4.530 5 H 0.074 0.926 6 C 0.073 3.927 7 N -0.897 5.897 8 Si 0.877 3.123 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.266 1.266 12 C 0.700 3.300 13 O -0.569 6.569 14 N -0.695 5.695 15 C 0.197 3.803 16 C -0.168 4.168 17 C -0.085 4.085 18 C -0.144 4.144 19 C 0.156 3.844 20 N -0.677 5.677 21 C 0.491 3.509 22 O -0.540 6.540 23 C -0.143 4.143 24 H 0.047 0.953 25 H 0.081 0.919 26 H 0.055 0.945 27 H 0.032 0.968 28 H 0.038 0.962 29 H 0.265 0.735 30 H 0.403 0.597 31 H 0.123 0.877 32 H 0.126 0.874 33 H 0.129 0.871 34 H 0.416 0.584 35 H 0.142 0.858 36 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.002 -15.006 6.131 16.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.342 5.342 3 C 0.109 3.891 4 C -0.569 4.569 5 H 0.092 0.908 6 C -0.130 4.130 7 N -0.536 5.536 8 Si 0.703 3.297 9 H -0.199 1.199 10 H -0.211 1.211 11 H -0.191 1.191 12 C 0.402 3.598 13 O -0.445 6.445 14 N -0.344 5.344 15 C 0.101 3.899 16 C -0.190 4.190 17 C -0.104 4.104 18 C -0.165 4.165 19 C 0.062 3.938 20 N -0.325 5.325 21 C 0.261 3.739 22 O -0.414 6.414 23 C -0.166 4.166 24 H 0.065 0.935 25 H 0.100 0.900 26 H 0.073 0.927 27 H 0.050 0.950 28 H 0.056 0.944 29 H 0.075 0.925 30 H 0.240 0.760 31 H 0.141 0.859 32 H 0.143 0.857 33 H 0.147 0.853 34 H 0.252 0.748 35 H 0.158 0.842 36 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -1.555 -15.401 5.958 16.587 hybrid contribution 0.116 1.195 0.496 1.299 sum -1.439 -14.207 6.454 15.670 Atomic orbital electron populations 1.21642 0.81085 1.03013 1.00495 1.47132 1.05881 1.05719 1.75500 1.19623 0.92274 0.78768 0.98386 1.21344 1.37040 1.07181 0.91302 0.90785 1.24846 0.95219 0.97314 0.95579 1.69898 1.41434 1.23579 1.18669 0.86849 0.80153 0.79775 0.82882 1.19881 1.21060 1.19052 1.15865 0.85522 0.80055 0.78340 1.90892 1.11323 1.85628 1.56656 1.42922 1.10047 1.03676 1.77795 1.17211 0.93294 0.84868 0.94575 1.20821 1.02964 0.92825 1.02361 1.20701 0.94739 0.96957 0.98020 1.20948 0.98917 0.98225 0.98442 1.17558 0.88773 0.94201 0.93264 1.44185 1.23879 1.18334 1.46100 1.22859 0.91279 0.80917 0.78877 1.90726 1.50144 1.39381 1.61119 1.21001 0.96567 0.97961 1.01085 0.93495 0.89999 0.92679 0.95000 0.94359 0.92534 0.75982 0.85896 0.85651 0.85346 0.74770 0.84202 0.83929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.19 10.16 59.85 0.61 1.80 16 2 N -0.61 -12.24 2.86 -188.74 -0.54 -12.77 16 3 C 0.23 5.50 4.23 -5.19 -0.02 5.48 16 4 C -0.53 -14.92 9.94 -34.44 -0.34 -15.27 16 5 H 0.07 2.30 8.06 -52.49 -0.42 1.88 16 6 C 0.07 2.08 5.47 -17.82 -0.10 1.99 16 7 N -0.90 -27.25 13.96 55.43 0.77 -26.47 16 8 Si 0.88 21.12 27.47 -169.99 -4.67 16.45 16 9 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 10 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.27 -6.01 6.54 56.52 0.37 -5.64 16 12 C 0.70 14.30 8.00 -86.92 -0.70 13.60 16 13 O -0.57 -13.73 13.71 5.29 0.07 -13.65 16 14 N -0.69 -10.97 5.17 -14.24 -0.07 -11.04 16 15 C 0.20 3.08 6.25 -83.71 -0.52 2.56 16 16 C -0.17 -2.14 9.96 -39.36 -0.39 -2.53 16 17 C -0.08 -1.04 10.03 -39.64 -0.40 -1.44 16 18 C -0.14 -1.99 8.65 -39.36 -0.34 -2.33 16 19 C 0.16 2.28 6.25 -83.72 -0.52 1.75 16 20 N -0.68 -7.70 5.34 -13.76 -0.07 -7.77 16 21 C 0.49 5.11 12.37 54.05 0.67 5.78 16 22 O -0.54 -8.00 14.96 5.55 0.08 -7.91 16 23 C -0.14 -2.39 8.57 -39.21 -0.34 -2.72 16 24 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.08 1.24 8.07 -51.93 -0.42 0.82 16 26 H 0.05 0.66 6.45 -51.93 -0.33 0.32 16 27 H 0.03 0.72 7.13 -51.93 -0.37 0.35 16 28 H 0.04 0.98 6.85 -51.93 -0.36 0.62 16 29 H 0.26 7.50 8.31 -40.82 -0.34 7.17 16 30 H 0.40 4.95 6.63 -40.82 -0.27 4.68 16 31 H 0.12 1.24 8.06 -52.48 -0.42 0.81 16 32 H 0.13 1.18 8.06 -52.49 -0.42 0.75 16 33 H 0.13 1.74 6.52 -52.49 -0.34 1.40 16 34 H 0.42 3.80 8.93 -40.82 -0.36 3.43 16 35 H 0.14 0.73 8.06 -52.48 -0.42 0.31 16 36 H 0.14 2.73 6.53 -52.48 -0.34 2.39 16 LS Contribution 309.88 15.07 4.67 4.67 Total: -1.00 -36.75 309.88 -6.23 -42.98 By element: Atomic # 1 Polarization: 10.94 SS G_CDS: -4.08 Total: 6.86 kcal Atomic # 6 Polarization: 11.06 SS G_CDS: -2.39 Total: 8.67 kcal Atomic # 7 Polarization: -58.15 SS G_CDS: 0.09 Total: -58.06 kcal Atomic # 8 Polarization: -21.72 SS G_CDS: 0.16 Total: -21.57 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -4.67 Total: 16.45 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -36.75 -6.23 -42.98 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001467441712.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.863 kcal (2) G-P(sol) polarization free energy of solvation -36.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds