Wall clock time and date at job start Mon Mar 30 2020 02:00:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46499 * 119.99916 * 2 1 4 4 C 1.50706 * 109.46712 * 269.99997 * 3 2 1 5 5 H 1.07996 * 119.99808 * 359.97438 * 4 3 2 6 6 C 1.37872 * 119.99646 * 180.02562 * 4 3 2 7 7 N 1.31518 * 119.99769 * 179.97438 * 6 4 3 8 8 Si 1.86803 * 120.00476 * 359.97438 * 6 4 3 9 9 H 1.48503 * 109.46703 * 89.99914 * 8 6 4 10 10 H 1.48496 * 109.47376 * 210.00274 * 8 6 4 11 11 H 1.48499 * 109.46624 * 330.00526 * 8 6 4 12 12 C 1.34777 * 120.00019 * 179.97438 * 2 1 3 13 13 O 1.21588 * 119.99759 * 180.02562 * 12 2 1 14 14 N 1.34773 * 119.99761 * 0.02562 * 12 2 1 15 15 C 1.39954 * 119.99722 * 174.63720 * 14 12 2 16 16 C 1.38939 * 120.03723 * 145.19399 * 15 14 12 17 17 C 1.38129 * 120.07085 * 180.22919 * 16 15 14 18 18 C 1.38183 * 120.14183 * 359.49275 * 17 16 15 19 19 C 1.38903 * 120.06488 * 0.50418 * 18 17 16 20 20 N 1.39922 * 120.03484 * 179.77167 * 19 18 17 21 21 C 1.34775 * 120.00366 * 34.78646 * 20 19 18 22 22 O 1.21289 * 119.99460 * 5.30023 * 21 20 19 23 23 C 1.38713 * 120.03305 * 325.16805 * 15 14 12 24 24 H 1.09003 * 109.47330 * 270.00345 * 1 2 3 25 25 H 1.08998 * 109.47138 * 30.00172 * 1 2 3 26 26 H 1.09000 * 109.46676 * 150.00419 * 1 2 3 27 27 H 1.08996 * 109.47120 * 29.99286 * 3 2 1 28 28 H 1.08998 * 109.47278 * 149.99690 * 3 2 1 29 29 H 0.96998 * 120.00173 * 179.97438 * 7 6 4 30 30 H 0.96997 * 120.00877 * 354.63670 * 14 12 2 31 31 H 1.08004 * 119.95874 * 359.95033 * 16 15 14 32 32 H 1.08001 * 119.93115 * 179.73737 * 17 16 15 33 33 H 1.07999 * 119.97043 * 180.24981 * 18 17 16 34 34 H 0.97009 * 119.99990 * 214.79241 * 20 19 18 35 35 H 1.08003 * 120.00301 * 185.30298 * 21 20 19 36 36 H 1.08008 * 120.07265 * 0.02562 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7037 -1.4209 5 1 2.0981 1.0956 -2.2417 6 6 3.1268 2.8773 -1.6728 7 7 3.3464 3.2567 -2.9128 8 14 3.7338 3.9287 -0.2531 9 1 5.1070 3.5068 0.1235 10 1 3.7497 5.3553 -0.6650 11 1 2.8273 3.7596 0.9109 12 6 2.1389 -1.1672 0.0005 13 8 3.3548 -1.1671 0.0010 14 7 1.4650 -2.3343 0.0005 15 6 2.1603 -3.5437 -0.1122 16 6 1.7076 -4.6716 0.5613 17 6 2.3959 -5.8643 0.4543 18 6 3.5304 -5.9428 -0.3308 19 6 3.9880 -4.8189 -1.0066 20 7 5.1396 -4.8979 -1.7976 21 6 5.4126 -6.0279 -2.4795 22 8 4.6138 -6.9406 -2.4852 23 6 3.3017 -3.6178 -0.8969 24 1 -0.3634 0.0001 1.0277 25 1 -0.3633 0.8900 -0.5139 26 1 -0.3633 -0.8900 -0.5138 27 1 1.6084 2.0284 0.5137 28 1 3.1499 1.1385 0.5139 29 1 3.8233 4.0826 -3.0902 30 1 0.4982 -2.3363 0.0787 31 1 0.8192 -4.6143 1.1727 32 1 2.0444 -6.7385 0.9821 33 1 4.0641 -6.8779 -0.4157 34 1 5.7415 -4.1393 -1.8550 35 1 6.3425 -6.1206 -3.0208 36 1 3.6556 -2.7425 -1.4215 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001467441712.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:10 Heat of formation + Delta-G solvation = -43.132409 kcal Electronic energy + Delta-G solvation = -20954.185126 eV Core-core repulsion = 17631.156080 eV Total energy + Delta-G solvation = -3323.029047 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.81735 -40.94398 -39.20042 -36.80493 -36.26958 -35.16037 -34.53586 -31.24341 -30.71775 -29.63848 -27.41292 -25.00391 -24.68448 -23.51714 -21.99232 -20.97089 -19.60908 -19.14127 -18.85709 -18.45089 -17.27921 -17.03265 -16.65714 -16.27538 -16.08395 -15.70779 -15.14852 -15.02682 -14.89331 -14.53166 -14.46533 -14.10005 -13.73849 -13.67014 -13.26644 -12.93842 -12.81035 -12.54361 -12.41405 -12.05243 -11.78005 -11.73767 -11.16117 -11.07865 -10.85304 -10.81717 -9.56338 -9.31168 -8.87444 -8.32940 -6.38356 0.27973 0.40275 1.34772 1.39010 1.47239 1.62671 1.75380 2.17341 2.29693 2.32382 2.90788 3.00183 3.05168 3.95917 4.12411 4.22078 4.26998 4.29344 4.49095 4.57979 4.62612 4.68609 4.76439 4.88775 4.93264 5.26499 5.34478 5.38259 5.45227 5.47792 5.56315 5.61092 6.00231 6.10410 6.27033 6.44515 6.62915 6.98000 7.11012 7.23562 7.56871 8.84167 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.021516 B = 0.004445 C = 0.003907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.021995 B = 6298.378571 C = 7165.610561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.617 5.617 3 C 0.240 3.760 4 C -0.536 4.536 5 H 0.025 0.975 6 C 0.012 3.988 7 N -0.947 5.947 8 Si 0.949 3.051 9 H -0.276 1.276 10 H -0.276 1.276 11 H -0.235 1.235 12 C 0.694 3.306 13 O -0.616 6.616 14 N -0.675 5.675 15 C 0.173 3.827 16 C -0.156 4.156 17 C -0.077 4.077 18 C -0.152 4.152 19 C 0.147 3.853 20 N -0.677 5.677 21 C 0.493 3.507 22 O -0.584 6.584 23 C -0.171 4.171 24 H 0.084 0.916 25 H 0.073 0.927 26 H 0.080 0.920 27 H 0.056 0.944 28 H 0.022 0.978 29 H 0.268 0.732 30 H 0.421 0.579 31 H 0.158 0.842 32 H 0.163 0.837 33 H 0.131 0.869 34 H 0.424 0.576 35 H 0.202 0.798 36 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.996 -16.090 8.443 18.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.351 5.351 3 C 0.117 3.883 4 C -0.575 4.575 5 H 0.044 0.956 6 C -0.186 4.186 7 N -0.587 5.587 8 Si 0.772 3.228 9 H -0.202 1.202 10 H -0.202 1.202 11 H -0.158 1.158 12 C 0.395 3.605 13 O -0.496 6.496 14 N -0.327 5.327 15 C 0.077 3.923 16 C -0.177 4.177 17 C -0.095 4.095 18 C -0.173 4.173 19 C 0.052 3.948 20 N -0.325 5.325 21 C 0.266 3.734 22 O -0.460 6.460 23 C -0.194 4.194 24 H 0.103 0.897 25 H 0.092 0.908 26 H 0.099 0.901 27 H 0.074 0.926 28 H 0.040 0.960 29 H 0.077 0.923 30 H 0.262 0.738 31 H 0.176 0.824 32 H 0.180 0.820 33 H 0.149 0.851 34 H 0.262 0.738 35 H 0.217 0.783 36 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -2.612 -16.517 8.276 18.658 hybrid contribution 0.418 1.396 -0.321 1.493 sum -2.194 -15.121 7.955 17.226 Atomic orbital electron populations 1.21962 0.77642 1.03959 1.03177 1.47112 1.08032 1.04487 1.75487 1.19294 0.92631 0.81056 0.95289 1.21568 1.36805 1.06693 0.92424 0.95620 1.25843 0.95244 0.98905 0.98618 1.70057 1.42753 1.24509 1.21385 0.85700 0.79637 0.77640 0.79856 1.20177 1.20169 1.15844 1.16094 0.85153 0.81152 0.78056 1.90853 1.13607 1.86508 1.58637 1.42591 1.10748 1.02436 1.76877 1.17529 0.93567 0.85509 0.95669 1.21130 1.03656 0.91516 1.01410 1.21162 0.93555 0.97963 0.96868 1.21159 0.99698 0.97805 0.98599 1.17740 0.89587 0.93744 0.93709 1.44373 1.23133 1.19261 1.45751 1.23953 0.92229 0.79415 0.77839 1.90704 1.51918 1.40784 1.62630 1.20864 0.98235 0.97611 1.02718 0.89744 0.90839 0.90118 0.92572 0.96023 0.92282 0.73842 0.82405 0.81996 0.85105 0.73830 0.78310 0.87652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.02 10.16 127.77 1.30 3.32 16 2 N -0.62 -24.64 2.86 -869.30 -2.48 -27.13 16 3 C 0.24 11.45 4.23 85.63 0.36 11.81 16 4 C -0.54 -31.22 9.94 25.60 0.25 -30.96 16 5 H 0.03 1.69 8.06 -2.91 -0.02 1.66 16 6 C 0.01 0.69 5.47 84.65 0.46 1.15 16 7 N -0.95 -59.45 13.96 21.45 0.30 -59.15 16 8 Si 0.95 43.60 27.47 68.60 1.88 45.49 16 9 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 10 H -0.28 -12.23 7.11 99.48 0.71 -11.53 16 11 H -0.24 -9.59 6.54 99.48 0.65 -8.94 16 12 C 0.69 28.68 8.00 179.06 1.43 30.11 16 13 O -0.62 -31.04 13.71 -3.99 -0.05 -31.10 16 14 N -0.68 -20.81 5.17 -317.24 -1.64 -22.45 16 15 C 0.17 5.32 6.25 38.13 0.24 5.56 16 16 C -0.16 -3.55 9.96 22.41 0.22 -3.33 16 17 C -0.08 -1.66 10.03 22.23 0.22 -1.43 16 18 C -0.15 -4.00 8.65 22.42 0.19 -3.80 16 19 C 0.15 4.34 6.25 38.14 0.24 4.57 16 20 N -0.68 -15.47 5.34 -315.82 -1.69 -17.16 16 21 C 0.49 9.71 12.37 129.79 1.61 11.32 16 22 O -0.58 -16.89 14.96 -3.06 -0.05 -16.93 16 23 C -0.17 -5.94 8.57 22.51 0.19 -5.75 16 24 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 25 H 0.07 2.13 8.07 -2.39 -0.02 2.11 16 26 H 0.08 1.73 6.45 -2.39 -0.02 1.72 16 27 H 0.06 2.41 7.13 -2.39 -0.02 2.40 16 28 H 0.02 1.11 6.85 -2.39 -0.02 1.09 16 29 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 30 H 0.42 9.40 6.63 -92.71 -0.61 8.78 16 31 H 0.16 2.45 8.06 -2.91 -0.02 2.43 16 32 H 0.16 2.31 8.06 -2.91 -0.02 2.29 16 33 H 0.13 3.39 6.52 -2.91 -0.02 3.37 16 34 H 0.42 8.02 8.93 -92.70 -0.83 7.19 16 35 H 0.20 1.50 8.06 -2.91 -0.02 1.48 16 36 H 0.11 4.41 6.53 -2.91 -0.02 4.39 16 Total: -1.00 -85.56 309.88 2.63 -82.93 By element: Atomic # 1 Polarization: 23.30 SS G_CDS: -0.37 Total: 22.93 kcal Atomic # 6 Polarization: 15.84 SS G_CDS: 6.73 Total: 22.57 kcal Atomic # 7 Polarization: -120.37 SS G_CDS: -5.51 Total: -125.88 kcal Atomic # 8 Polarization: -47.93 SS G_CDS: -0.10 Total: -48.03 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 1.88 Total: 45.49 kcal Total: -85.56 2.63 -82.93 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001467441712.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.796 kcal (2) G-P(sol) polarization free energy of solvation -85.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds