Wall clock time and date at job start Mon Mar 30 2020 01:26:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.21289 * 119.99770 * 2 1 4 4 C 1.46844 * 119.99844 * 180.02562 * 2 1 3 5 5 C 1.40587 * 120.50928 * 180.02562 * 4 2 1 6 6 C 1.36842 * 118.45742 * 180.02562 * 5 4 2 7 7 C 1.39358 * 119.41226 * 359.97438 * 6 5 4 8 8 N 1.38819 * 119.49999 * 180.02562 * 7 6 5 9 9 C 1.34771 * 120.00094 * 174.90474 * 8 7 6 10 10 O 1.21571 * 120.00294 * 5.09750 * 9 8 7 11 11 N 1.34778 * 119.99912 * 185.10028 * 9 8 7 12 12 C 1.46499 * 119.99873 * 179.97438 * 11 9 8 13 13 H 1.09003 * 109.47273 * 34.99703 * 12 11 9 14 14 C 1.52993 * 109.47149 * 274.99772 * 12 11 9 15 15 C 1.50703 * 109.47303 * 154.99713 * 12 11 9 16 16 H 1.08005 * 119.99649 * 359.97438 * 15 12 11 17 17 C 1.37872 * 120.00207 * 180.02562 * 15 12 11 18 18 N 1.31506 * 120.00183 * 0.02562 * 17 15 12 19 19 Si 1.86806 * 120.00083 * 180.02562 * 17 15 12 20 20 H 1.48500 * 109.46929 * 359.97438 * 19 17 15 21 21 H 1.48496 * 109.47030 * 119.99556 * 19 17 15 22 22 H 1.48498 * 109.47179 * 240.00243 * 19 17 15 23 23 N 1.32582 * 121.00009 * 0.02562 * 7 6 5 24 24 C 1.31608 * 121.67706 * 359.97438 * 23 7 6 25 25 H 1.08994 * 109.47011 * 270.00077 * 1 2 3 26 26 H 1.09005 * 109.47182 * 29.99719 * 1 2 3 27 27 H 1.08998 * 109.47480 * 149.99681 * 1 2 3 28 28 H 1.07995 * 120.77136 * 0.29079 * 5 4 2 29 29 H 1.07997 * 120.29374 * 180.02562 * 6 5 4 30 30 H 0.97002 * 119.99971 * 354.90694 * 8 7 6 31 31 H 0.97001 * 119.99773 * 359.97438 * 11 9 8 32 32 H 1.08996 * 109.47264 * 299.99868 * 14 12 11 33 33 H 1.09000 * 109.47259 * 60.00291 * 14 12 11 34 34 H 1.09007 * 109.47303 * 179.97438 * 14 12 11 35 35 H 0.97004 * 120.00355 * 180.02562 * 18 17 15 36 36 H 1.08004 * 119.76031 * 179.97438 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1135 1.0504 0.0000 4 6 2.2412 -1.2717 -0.0006 5 6 3.6471 -1.2843 0.0000 6 6 4.2884 -2.4931 -0.0011 7 6 3.5367 -3.6666 -0.0022 8 7 4.1854 -4.8939 -0.0028 9 6 3.4725 -6.0330 0.0999 10 8 2.2575 -5.9918 0.0996 11 7 4.1065 -7.2178 0.2029 12 6 3.3315 -8.4560 0.3150 13 1 2.4231 -8.3713 -0.2814 14 6 2.9596 -8.6939 1.7798 15 6 4.1566 -9.6124 -0.1880 16 1 5.1580 -9.4420 -0.5550 17 6 3.6328 -10.8877 -0.1808 18 7 2.4130 -11.0950 0.2646 19 14 4.6559 -12.3213 -0.8036 20 1 5.9837 -11.8259 -1.2472 21 1 4.8360 -13.3119 0.2878 22 1 3.9611 -12.9653 -1.9471 23 7 2.2114 -3.6286 -0.0027 24 6 1.5527 -2.4893 -0.0016 25 1 -0.3633 0.0000 1.0276 26 1 -0.3634 0.8900 -0.5138 27 1 -0.3634 -0.8899 -0.5139 28 1 4.2078 -0.3613 0.0055 29 1 5.3674 -2.5373 -0.0003 30 1 5.1518 -4.9316 -0.0770 31 1 5.0760 -7.2507 0.2027 32 1 3.8680 -8.7787 2.3762 33 1 2.3627 -7.8576 2.1436 34 1 2.3825 -9.6150 1.8632 35 1 2.0445 -11.9924 0.2701 36 1 0.4726 -2.4945 -0.0025 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001476397705.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:43 Heat of formation + Delta-G solvation = -17.468572 kcal Electronic energy + Delta-G solvation = -20486.090660 eV Core-core repulsion = 17164.174481 eV Total energy + Delta-G solvation = -3321.916179 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.89868 -39.54614 -38.47635 -35.32243 -34.36290 -32.65552 -32.42342 -31.55309 -29.41405 -28.30640 -25.29507 -24.24332 -23.94545 -21.44595 -20.29723 -19.88505 -18.45867 -18.05492 -16.78553 -16.32439 -15.79814 -15.38280 -15.13759 -14.96158 -14.76162 -14.39098 -14.06545 -13.60414 -13.51463 -13.20181 -12.87722 -12.43670 -12.42283 -12.35725 -11.81032 -11.14870 -11.07523 -10.84326 -10.55966 -10.31418 -10.27237 -10.11089 -10.03666 -9.84174 -9.07748 -8.89076 -8.59637 -8.35539 -7.90896 -6.16106 -4.25510 0.45774 1.22458 2.27315 2.79560 3.21314 3.29371 3.31693 3.59386 3.89628 4.05009 4.23771 4.34971 4.68416 4.75024 4.77010 4.89151 5.07458 5.16818 5.18582 5.20467 5.51279 5.66447 5.71959 6.03827 6.17019 6.63510 6.75461 6.93286 6.95908 7.13480 7.35473 7.40723 7.56289 7.68748 7.87269 8.07953 8.11826 8.67144 8.80284 9.19149 9.42909 10.90001 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.046788 B = 0.003151 C = 0.003031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.303304 B = 8884.866536 C = 9236.970731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.408 3.592 3 O -0.473 6.473 4 C -0.284 4.284 5 C 0.012 3.988 6 C -0.233 4.233 7 C 0.425 3.575 8 N -0.669 5.669 9 C 0.678 3.322 10 O -0.530 6.530 11 N -0.719 5.719 12 C 0.281 3.719 13 H 0.050 0.950 14 C -0.148 4.148 15 C -0.534 4.534 16 H 0.062 0.938 17 C 0.066 3.934 18 N -0.882 5.882 19 Si 0.903 3.097 20 H -0.273 1.273 21 H -0.282 1.282 22 H -0.283 1.283 23 N -0.479 5.479 24 C 0.191 3.809 25 H 0.098 0.902 26 H 0.087 0.913 27 H 0.088 0.912 28 H 0.143 0.857 29 H 0.140 0.860 30 H 0.412 0.588 31 H 0.385 0.615 32 H 0.026 0.974 33 H 0.015 0.985 34 H 0.091 0.909 35 H 0.264 0.736 36 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.099 17.340 0.086 17.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.259 4.259 2 C 0.287 3.713 3 O -0.350 6.350 4 C -0.290 4.290 5 C -0.013 4.013 6 C -0.257 4.257 7 C 0.191 3.809 8 N -0.315 5.315 9 C 0.378 3.622 10 O -0.401 6.401 11 N -0.371 5.371 12 C 0.179 3.821 13 H 0.068 0.932 14 C -0.207 4.207 15 C -0.573 4.573 16 H 0.080 0.920 17 C -0.137 4.137 18 N -0.519 5.519 19 Si 0.730 3.270 20 H -0.198 1.198 21 H -0.208 1.208 22 H -0.208 1.208 23 N -0.193 5.193 24 C 0.029 3.971 25 H 0.117 0.883 26 H 0.105 0.895 27 H 0.107 0.893 28 H 0.161 0.839 29 H 0.158 0.842 30 H 0.248 0.752 31 H 0.217 0.783 32 H 0.045 0.955 33 H 0.035 0.965 34 H 0.109 0.891 35 H 0.074 0.926 36 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 0.709 16.725 0.135 16.741 hybrid contribution 1.985 -0.257 -0.315 2.026 sum 2.695 16.468 -0.180 16.688 Atomic orbital electron populations 1.22251 0.93765 1.04985 1.04889 1.22171 0.91533 0.87185 0.70381 1.90523 1.72184 1.34363 1.37931 1.21335 0.95335 0.96402 1.15911 1.21229 0.93213 0.97960 0.88912 1.21152 1.01226 0.91441 1.11895 1.18587 0.89157 0.84938 0.88266 1.43146 1.10640 1.03775 1.73981 1.16314 0.86132 0.80255 0.79546 1.91010 1.10638 1.84605 1.53887 1.45938 1.09794 1.05549 1.75847 1.18704 0.91909 0.77600 0.93861 0.93177 1.22103 0.99388 1.01591 0.97601 1.21234 1.01074 0.91668 1.43322 0.92014 1.24879 0.95088 0.98781 0.94942 1.69909 1.14606 1.22016 1.45404 0.86377 0.80087 0.81978 0.78536 1.19769 1.20848 1.20849 1.67969 1.06578 1.28559 1.16240 1.23234 1.00397 0.85603 0.87831 0.88347 0.89456 0.89342 0.83927 0.84222 0.75215 0.78265 0.95515 0.96544 0.89053 0.92551 0.81656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.39 9.76 36.01 0.35 -1.04 16 2 C 0.41 4.29 7.22 -30.83 -0.22 4.07 16 3 O -0.47 -6.35 17.15 5.55 0.10 -6.25 16 4 C -0.28 -3.23 5.89 -104.92 -0.62 -3.85 16 5 C 0.01 0.13 9.66 -39.20 -0.38 -0.25 16 6 C -0.23 -2.54 9.86 -39.67 -0.39 -2.93 16 7 C 0.42 6.21 7.41 -154.96 -1.15 5.06 16 8 N -0.67 -9.80 5.37 -15.83 -0.09 -9.89 16 9 C 0.68 13.51 8.48 -86.92 -0.74 12.78 16 10 O -0.53 -12.85 14.24 5.30 0.08 -12.77 16 11 N -0.72 -14.47 5.07 -59.82 -0.30 -14.77 16 12 C 0.28 7.01 2.56 -69.08 -0.18 6.84 16 13 H 0.05 1.45 7.58 -51.93 -0.39 1.06 16 14 C -0.15 -3.64 9.26 37.15 0.34 -3.30 16 15 C -0.53 -13.85 8.73 -34.44 -0.30 -14.15 16 16 H 0.06 1.52 7.74 -52.48 -0.41 1.12 16 17 C 0.07 1.76 5.30 -17.83 -0.09 1.66 16 18 N -0.88 -24.51 11.32 55.43 0.63 -23.88 16 19 Si 0.90 20.28 29.54 -169.99 -5.02 15.26 16 20 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 21 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 22 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 23 N -0.48 -7.96 7.84 -12.00 -0.09 -8.05 16 24 C 0.19 2.40 10.54 -17.03 -0.18 2.22 16 25 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.09 0.48 6.48 -51.93 -0.34 0.15 16 28 H 0.14 1.34 7.72 -52.49 -0.41 0.93 16 29 H 0.14 1.07 8.06 -52.49 -0.42 0.64 16 30 H 0.41 4.22 8.70 -40.82 -0.36 3.87 16 31 H 0.39 6.47 8.56 -40.82 -0.35 6.12 16 32 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.09 2.44 6.07 -51.93 -0.32 2.13 16 35 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 36 H 0.17 1.58 6.36 -52.48 -0.33 1.25 16 LS Contribution 314.68 15.07 4.74 4.74 Total: -1.00 -34.04 314.68 -7.66 -41.70 By element: Atomic # 1 Polarization: 10.94 SS G_CDS: -4.14 Total: 6.80 kcal Atomic # 6 Polarization: 10.66 SS G_CDS: -3.55 Total: 7.11 kcal Atomic # 7 Polarization: -56.73 SS G_CDS: 0.15 Total: -56.59 kcal Atomic # 8 Polarization: -19.20 SS G_CDS: 0.17 Total: -19.03 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.02 Total: 15.26 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -34.04 -7.66 -41.70 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001476397705.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.230 kcal (2) G-P(sol) polarization free energy of solvation -34.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds