Wall clock time and date at job start Mon Mar 30 2020 01:26:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.21289 * 119.99770 * 2 1 4 4 C 1.46844 * 119.99844 * 180.02562 * 2 1 3 5 5 C 1.40587 * 120.50928 * 180.02562 * 4 2 1 6 6 C 1.36842 * 118.45742 * 180.02562 * 5 4 2 7 7 C 1.39358 * 119.41226 * 359.97438 * 6 5 4 8 8 N 1.38819 * 119.49999 * 180.02562 * 7 6 5 9 9 C 1.34771 * 120.00094 * 174.90474 * 8 7 6 10 10 O 1.21571 * 120.00294 * 5.09750 * 9 8 7 11 11 N 1.34778 * 119.99912 * 185.10028 * 9 8 7 12 12 C 1.46499 * 119.99873 * 179.97438 * 11 9 8 13 13 H 1.09003 * 109.47273 * 34.99703 * 12 11 9 14 14 C 1.52993 * 109.47149 * 274.99772 * 12 11 9 15 15 C 1.50703 * 109.47303 * 154.99713 * 12 11 9 16 16 H 1.08005 * 119.99649 * 359.97438 * 15 12 11 17 17 C 1.37872 * 120.00207 * 180.02562 * 15 12 11 18 18 N 1.31506 * 120.00183 * 0.02562 * 17 15 12 19 19 Si 1.86806 * 120.00083 * 180.02562 * 17 15 12 20 20 H 1.48500 * 109.46929 * 359.97438 * 19 17 15 21 21 H 1.48496 * 109.47030 * 119.99556 * 19 17 15 22 22 H 1.48498 * 109.47179 * 240.00243 * 19 17 15 23 23 N 1.32582 * 121.00009 * 0.02562 * 7 6 5 24 24 C 1.31608 * 121.67706 * 359.97438 * 23 7 6 25 25 H 1.08994 * 109.47011 * 270.00077 * 1 2 3 26 26 H 1.09005 * 109.47182 * 29.99719 * 1 2 3 27 27 H 1.08998 * 109.47480 * 149.99681 * 1 2 3 28 28 H 1.07995 * 120.77136 * 0.29079 * 5 4 2 29 29 H 1.07997 * 120.29374 * 180.02562 * 6 5 4 30 30 H 0.97002 * 119.99971 * 354.90694 * 8 7 6 31 31 H 0.97001 * 119.99773 * 359.97438 * 11 9 8 32 32 H 1.08996 * 109.47264 * 299.99868 * 14 12 11 33 33 H 1.09000 * 109.47259 * 60.00291 * 14 12 11 34 34 H 1.09007 * 109.47303 * 179.97438 * 14 12 11 35 35 H 0.97004 * 120.00355 * 180.02562 * 18 17 15 36 36 H 1.08004 * 119.76031 * 179.97438 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1135 1.0504 0.0000 4 6 2.2412 -1.2717 -0.0006 5 6 3.6471 -1.2843 0.0000 6 6 4.2884 -2.4931 -0.0011 7 6 3.5367 -3.6666 -0.0022 8 7 4.1854 -4.8939 -0.0028 9 6 3.4725 -6.0330 0.0999 10 8 2.2575 -5.9918 0.0996 11 7 4.1065 -7.2178 0.2029 12 6 3.3315 -8.4560 0.3150 13 1 2.4231 -8.3713 -0.2814 14 6 2.9596 -8.6939 1.7798 15 6 4.1566 -9.6124 -0.1880 16 1 5.1580 -9.4420 -0.5550 17 6 3.6328 -10.8877 -0.1808 18 7 2.4130 -11.0950 0.2646 19 14 4.6559 -12.3213 -0.8036 20 1 5.9837 -11.8259 -1.2472 21 1 4.8360 -13.3119 0.2878 22 1 3.9611 -12.9653 -1.9471 23 7 2.2114 -3.6286 -0.0027 24 6 1.5527 -2.4893 -0.0016 25 1 -0.3633 0.0000 1.0276 26 1 -0.3634 0.8900 -0.5138 27 1 -0.3634 -0.8899 -0.5139 28 1 4.2078 -0.3613 0.0055 29 1 5.3674 -2.5373 -0.0003 30 1 5.1518 -4.9316 -0.0770 31 1 5.0760 -7.2507 0.2027 32 1 3.8680 -8.7787 2.3762 33 1 2.3627 -7.8576 2.1436 34 1 2.3825 -9.6150 1.8632 35 1 2.0445 -11.9924 0.2701 36 1 0.4726 -2.4945 -0.0025 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001476397705.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:43 Heat of formation + Delta-G solvation = -41.261501 kcal Electronic energy + Delta-G solvation = -20487.122399 eV Core-core repulsion = 17164.174481 eV Total energy + Delta-G solvation = -3322.947918 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.00741 -40.76668 -39.60835 -36.95478 -35.86700 -34.33969 -33.54851 -32.55355 -30.86783 -29.50289 -27.32922 -25.32628 -24.98759 -23.04834 -21.54521 -21.18476 -19.93438 -19.26482 -17.97845 -17.68542 -17.04423 -16.92328 -16.59176 -15.97488 -15.97008 -15.51399 -15.27682 -15.03697 -14.76260 -14.37038 -14.30778 -13.81251 -13.71843 -13.02829 -12.98736 -12.97217 -12.89557 -12.72087 -12.27636 -12.11164 -11.84616 -11.40053 -11.08134 -11.00152 -10.91999 -10.60798 -10.07973 -9.84153 -9.27837 -8.16665 -6.33878 -0.50576 0.31827 1.36144 1.45546 1.46091 1.54272 1.60403 2.23578 2.42222 2.91956 3.05667 3.14338 3.22660 3.61687 3.82738 3.88600 4.01426 4.24399 4.55228 4.64663 4.68604 4.75548 4.84741 4.94193 5.03743 5.10664 5.18365 5.28378 5.37666 5.59418 5.62746 5.70450 5.82037 6.06280 6.11272 6.52321 6.73925 6.88669 7.29984 7.36293 7.70858 8.90114 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.046788 B = 0.003151 C = 0.003031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.303304 B = 8884.866536 C = 9236.970731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.412 3.588 3 O -0.503 6.503 4 C -0.278 4.278 5 C 0.006 3.994 6 C -0.209 4.209 7 C 0.394 3.606 8 N -0.653 5.653 9 C 0.681 3.319 10 O -0.580 6.580 11 N -0.713 5.713 12 C 0.290 3.710 13 H -0.001 1.001 14 C -0.134 4.134 15 C -0.545 4.545 16 H 0.076 0.924 17 C 0.014 3.986 18 N -0.917 5.917 19 Si 0.973 3.027 20 H -0.259 1.259 21 H -0.279 1.279 22 H -0.285 1.285 23 N -0.531 5.531 24 C 0.182 3.818 25 H 0.115 0.885 26 H 0.095 0.905 27 H 0.103 0.897 28 H 0.162 0.838 29 H 0.178 0.822 30 H 0.433 0.567 31 H 0.404 0.596 32 H 0.041 0.959 33 H 0.010 0.990 34 H 0.067 0.933 35 H 0.265 0.735 36 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.901 18.493 -0.148 18.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.255 4.255 2 C 0.293 3.707 3 O -0.382 6.382 4 C -0.283 4.283 5 C -0.020 4.020 6 C -0.232 4.232 7 C 0.161 3.839 8 N -0.302 5.302 9 C 0.380 3.620 10 O -0.455 6.455 11 N -0.367 5.367 12 C 0.186 3.814 13 H 0.017 0.983 14 C -0.193 4.193 15 C -0.583 4.583 16 H 0.094 0.906 17 C -0.186 4.186 18 N -0.556 5.556 19 Si 0.798 3.202 20 H -0.183 1.183 21 H -0.205 1.205 22 H -0.211 1.211 23 N -0.246 5.246 24 C 0.022 3.978 25 H 0.134 0.866 26 H 0.114 0.886 27 H 0.121 0.879 28 H 0.179 0.821 29 H 0.195 0.805 30 H 0.273 0.727 31 H 0.239 0.761 32 H 0.060 0.940 33 H 0.029 0.971 34 H 0.086 0.914 35 H 0.075 0.925 36 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 2.570 17.946 -0.103 18.129 hybrid contribution 1.375 -0.450 -0.244 1.467 sum 3.945 17.496 -0.347 17.939 Atomic orbital electron populations 1.22293 0.90817 1.06143 1.06281 1.22588 0.93071 0.86118 0.68939 1.90520 1.73111 1.35107 1.39488 1.21584 0.95952 0.96497 1.14295 1.21574 0.93292 0.98702 0.88392 1.21410 1.02834 0.89725 1.09267 1.18891 0.89234 0.85509 0.90269 1.42663 1.11391 1.02416 1.73778 1.16400 0.85679 0.81129 0.78760 1.90975 1.13024 1.85606 1.55870 1.45495 1.10402 1.04610 1.76241 1.18245 0.90643 0.79535 0.92959 0.98260 1.21916 0.99471 1.00058 0.97821 1.21564 1.01616 0.91992 1.43157 0.90619 1.25793 0.96105 1.01646 0.95050 1.70060 1.16367 1.22628 1.46510 0.85276 0.78863 0.78354 0.77686 1.18253 1.20495 1.21123 1.67823 1.08274 1.30837 1.17639 1.23532 1.01388 0.85029 0.87885 0.86642 0.88632 0.87868 0.82061 0.80452 0.72678 0.76091 0.94032 0.97137 0.91426 0.92535 0.79628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.28 9.76 71.24 0.70 -1.58 16 2 C 0.41 7.92 7.22 27.94 0.20 8.12 16 3 O -0.50 -12.72 17.15 -3.06 -0.05 -12.77 16 4 C -0.28 -5.87 5.89 -20.06 -0.12 -5.99 16 5 C 0.01 0.11 9.66 22.52 0.22 0.33 16 6 C -0.21 -4.02 9.86 22.21 0.22 -3.80 16 7 C 0.39 11.11 7.41 133.13 0.99 12.10 16 8 N -0.65 -18.51 5.37 -322.27 -1.73 -20.24 16 9 C 0.68 27.41 8.48 179.06 1.52 28.93 16 10 O -0.58 -29.17 14.24 -3.94 -0.06 -29.22 16 11 N -0.71 -28.73 5.07 -461.44 -2.34 -31.07 16 12 C 0.29 14.83 2.56 44.24 0.11 14.94 16 13 H 0.00 -0.03 7.58 -2.39 -0.02 -0.05 16 14 C -0.13 -6.74 9.26 71.98 0.67 -6.08 16 15 C -0.55 -28.19 8.73 25.60 0.22 -27.96 16 16 H 0.08 3.62 7.74 -2.91 -0.02 3.59 16 17 C 0.01 0.75 5.30 84.65 0.45 1.20 16 18 N -0.92 -52.09 11.32 21.44 0.24 -51.84 16 19 Si 0.97 41.23 29.54 68.60 2.03 43.26 16 20 H -0.26 -10.27 7.11 99.48 0.71 -9.56 16 21 H -0.28 -11.61 7.11 99.48 0.71 -10.90 16 22 H -0.29 -12.12 7.11 99.48 0.71 -11.42 16 23 N -0.53 -17.67 7.84 -191.87 -1.50 -19.17 16 24 C 0.18 4.44 10.54 85.12 0.90 5.33 16 25 H 0.12 0.99 8.14 -2.39 -0.02 0.97 16 26 H 0.09 0.99 8.14 -2.38 -0.02 0.97 16 27 H 0.10 0.89 6.48 -2.39 -0.02 0.88 16 28 H 0.16 2.56 7.72 -2.91 -0.02 2.53 16 29 H 0.18 1.96 8.06 -2.91 -0.02 1.94 16 30 H 0.43 7.96 8.70 -92.71 -0.81 7.16 16 31 H 0.40 13.04 8.56 -92.71 -0.79 12.25 16 32 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 33 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 34 H 0.07 3.73 6.07 -2.38 -0.01 3.72 16 35 H 0.27 14.23 8.31 -92.71 -0.77 13.46 16 36 H 0.19 3.41 6.36 -2.91 -0.02 3.39 16 Total: -1.00 -76.44 314.68 2.19 -74.24 By element: Atomic # 1 Polarization: 21.75 SS G_CDS: -0.46 Total: 21.28 kcal Atomic # 6 Polarization: 19.47 SS G_CDS: 6.07 Total: 25.54 kcal Atomic # 7 Polarization: -116.99 SS G_CDS: -5.33 Total: -122.33 kcal Atomic # 8 Polarization: -41.88 SS G_CDS: -0.11 Total: -41.99 kcal Atomic # 14 Polarization: 41.23 SS G_CDS: 2.03 Total: 43.26 kcal Total: -76.44 2.19 -74.24 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001476397705.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.982 kcal (2) G-P(sol) polarization free energy of solvation -76.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds