Wall clock time and date at job start Mon Mar 30 2020 01:26:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.21301 * 119.99666 * 2 1 4 4 C 1.46849 * 120.00360 * 179.97438 * 2 1 3 5 5 C 1.40577 * 120.51192 * 179.97438 * 4 2 1 6 6 C 1.36831 * 118.46020 * 179.72252 * 5 4 2 7 7 C 1.39359 * 119.41260 * 0.28398 * 6 5 4 8 8 N 1.38824 * 119.50346 * 179.97438 * 7 6 5 9 9 C 1.34773 * 120.00147 * 174.89795 * 8 7 6 10 10 O 1.21564 * 120.00117 * 5.10141 * 9 8 7 11 11 N 1.34774 * 119.99668 * 185.09456 * 9 8 7 12 12 C 1.46501 * 119.99811 * 180.02562 * 11 9 8 13 13 H 1.09007 * 109.46865 * 324.99957 * 12 11 9 14 14 C 1.52996 * 109.47145 * 85.00163 * 12 11 9 15 15 C 1.50703 * 109.47287 * 205.00259 * 12 11 9 16 16 H 1.08000 * 119.99544 * 0.02562 * 15 12 11 17 17 C 1.37875 * 120.00235 * 179.97438 * 15 12 11 18 18 N 1.31515 * 119.99724 * 359.97438 * 17 15 12 19 19 Si 1.86801 * 120.00215 * 179.97438 * 17 15 12 20 20 H 1.48507 * 109.46655 * 90.00024 * 19 17 15 21 21 H 1.48492 * 109.47244 * 209.99783 * 19 17 15 22 22 H 1.48493 * 109.47037 * 330.00181 * 19 17 15 23 23 N 1.32584 * 120.99817 * 0.02562 * 7 6 5 24 24 C 1.31603 * 121.67529 * 359.97438 * 23 7 6 25 25 H 1.09005 * 109.46393 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47360 * 300.00084 * 1 2 3 27 27 H 1.08998 * 109.46903 * 60.00641 * 1 2 3 28 28 H 1.08003 * 120.77115 * 0.02562 * 5 4 2 29 29 H 1.08005 * 120.29940 * 180.29827 * 6 5 4 30 30 H 0.97003 * 119.99484 * 354.90416 * 8 7 6 31 31 H 0.97000 * 120.00676 * 0.02562 * 11 9 8 32 32 H 1.08993 * 109.47274 * 60.00263 * 14 12 11 33 33 H 1.09002 * 109.46687 * 180.02562 * 14 12 11 34 34 H 1.08999 * 109.47303 * 299.99662 * 14 12 11 35 35 H 0.97002 * 119.99976 * 179.97438 * 18 17 15 36 36 H 1.08001 * 119.76150 * 180.02562 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1135 1.0505 0.0000 4 6 2.2414 -1.2717 0.0006 5 6 3.6471 -1.2842 0.0000 6 6 4.2885 -2.4928 0.0064 7 6 3.5369 -3.6664 0.0072 8 7 4.1857 -4.8937 0.0131 9 6 3.4725 -6.0325 0.1177 10 8 2.2576 -5.9914 0.1135 11 7 4.1063 -7.2169 0.2269 12 6 3.3311 -8.4548 0.3401 13 1 2.4241 -8.2643 0.9139 14 6 2.9556 -8.9509 -1.0576 15 6 4.1575 -9.5029 1.0399 16 1 5.1597 -9.2699 1.3680 17 6 3.6336 -10.7587 1.2623 18 7 2.4126 -11.0418 0.8641 19 14 4.6582 -12.0580 2.1292 20 1 4.4277 -11.9742 3.5938 21 1 4.2648 -13.4046 1.6425 22 1 6.0966 -11.8280 1.8405 23 7 2.2116 -3.6286 0.0013 24 6 1.5529 -2.4893 -0.0049 25 1 -0.3632 -1.0278 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5137 -0.8900 28 1 4.2079 -0.3611 -0.0004 29 1 5.3676 -2.5371 0.0111 30 1 5.1524 -4.9316 -0.0579 31 1 5.0758 -7.2497 0.2306 32 1 3.8625 -9.1414 -1.6314 33 1 2.3784 -9.8717 -0.9734 34 1 2.3578 -8.1929 -1.5638 35 1 2.0442 -11.9254 1.0202 36 1 0.4729 -2.4945 -0.0092 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001476397706.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:46 Heat of formation + Delta-G solvation = -15.730130 kcal Electronic energy + Delta-G solvation = -20485.402679 eV Core-core repulsion = 17163.561884 eV Total energy + Delta-G solvation = -3321.840795 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.90252 -39.54704 -38.47399 -35.32366 -34.36528 -32.65486 -32.42853 -31.57394 -29.40413 -28.29973 -25.29343 -24.25250 -23.94869 -21.44282 -20.29806 -19.88733 -18.46193 -18.06283 -16.78342 -16.33209 -15.78158 -15.41084 -15.16638 -14.95751 -14.78792 -14.40192 -14.04060 -13.58666 -13.55014 -13.18373 -12.87652 -12.43841 -12.36059 -12.35053 -11.81240 -11.13683 -11.06660 -10.87515 -10.54769 -10.32165 -10.26296 -10.09994 -10.03700 -9.83948 -9.09045 -8.89027 -8.58945 -8.35535 -7.90715 -6.15853 -4.25321 0.45675 1.22422 2.27510 2.79439 3.22375 3.29274 3.30806 3.59343 3.88974 4.04715 4.23725 4.33671 4.67975 4.75020 4.75655 4.89698 5.08619 5.17011 5.18158 5.19504 5.52672 5.66744 5.72399 6.03228 6.17100 6.63573 6.75514 6.93315 6.95918 7.13379 7.35677 7.40803 7.56208 7.68868 7.87333 8.07972 8.11989 8.67118 8.80341 9.19167 9.42991 10.90225 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.043700 B = 0.003164 C = 0.003058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.571463 B = 8848.821201 C = 9152.931440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.408 3.592 3 O -0.474 6.474 4 C -0.284 4.284 5 C 0.012 3.988 6 C -0.233 4.233 7 C 0.425 3.575 8 N -0.669 5.669 9 C 0.678 3.322 10 O -0.530 6.530 11 N -0.719 5.719 12 C 0.281 3.719 13 H 0.050 0.950 14 C -0.148 4.148 15 C -0.535 4.535 16 H 0.061 0.939 17 C 0.067 3.933 18 N -0.882 5.882 19 Si 0.903 3.097 20 H -0.279 1.279 21 H -0.285 1.285 22 H -0.274 1.274 23 N -0.479 5.479 24 C 0.190 3.810 25 H 0.084 0.916 26 H 0.094 0.906 27 H 0.094 0.906 28 H 0.143 0.857 29 H 0.140 0.860 30 H 0.412 0.588 31 H 0.385 0.615 32 H 0.026 0.974 33 H 0.091 0.909 34 H 0.016 0.984 35 H 0.265 0.735 36 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.099 17.145 -2.415 17.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.259 4.259 2 C 0.288 3.712 3 O -0.351 6.351 4 C -0.290 4.290 5 C -0.013 4.013 6 C -0.257 4.257 7 C 0.191 3.809 8 N -0.315 5.315 9 C 0.378 3.622 10 O -0.401 6.401 11 N -0.371 5.371 12 C 0.180 3.820 13 H 0.068 0.932 14 C -0.207 4.207 15 C -0.574 4.574 16 H 0.079 0.921 17 C -0.137 4.137 18 N -0.519 5.519 19 Si 0.730 3.270 20 H -0.205 1.205 21 H -0.210 1.210 22 H -0.199 1.199 23 N -0.193 5.193 24 C 0.029 3.971 25 H 0.103 0.897 26 H 0.112 0.888 27 H 0.112 0.888 28 H 0.161 0.839 29 H 0.158 0.842 30 H 0.248 0.752 31 H 0.217 0.783 32 H 0.045 0.955 33 H 0.109 0.891 34 H 0.035 0.965 35 H 0.075 0.925 36 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 0.707 16.521 -2.396 16.709 hybrid contribution 1.993 -0.178 0.409 2.042 sum 2.700 16.343 -1.987 16.684 Atomic orbital electron populations 1.22245 0.93802 1.04953 1.04906 1.22171 0.91516 0.87198 0.70340 1.90526 1.72130 1.34386 1.38054 1.21335 0.95334 0.96423 1.15866 1.21224 0.93205 0.97966 0.88898 1.21153 1.01233 0.91439 1.11876 1.18592 0.89160 0.84942 0.88245 1.43148 1.10605 1.03800 1.73991 1.16311 0.86131 0.80221 0.79573 1.91008 1.10644 1.84653 1.53828 1.45938 1.09797 1.05614 1.75785 1.18701 0.91886 0.77601 0.93856 0.93192 1.22105 0.99397 1.01934 0.97274 1.21195 1.00971 0.96417 1.38780 0.92068 1.24880 0.95104 0.98258 0.95432 1.69904 1.14567 1.21885 1.45589 0.86427 0.80184 0.80625 0.79719 1.20543 1.21035 1.19873 1.67971 1.06577 1.28556 1.16237 1.23281 1.00401 0.85624 0.87841 0.89681 0.88750 0.88760 0.83916 0.84212 0.75221 0.78266 0.95503 0.89051 0.96526 0.92496 0.81565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.40 10.20 36.01 0.37 -1.03 16 2 C 0.41 4.31 7.22 -30.82 -0.22 4.09 16 3 O -0.47 -6.37 17.15 5.54 0.10 -6.28 16 4 C -0.28 -3.24 5.89 -104.92 -0.62 -3.86 16 5 C 0.01 0.14 9.66 -39.21 -0.38 -0.24 16 6 C -0.23 -2.55 9.86 -39.67 -0.39 -2.94 16 7 C 0.42 6.22 7.41 -154.95 -1.15 5.07 16 8 N -0.67 -9.81 5.37 -15.83 -0.09 -9.89 16 9 C 0.68 13.52 8.48 -86.92 -0.74 12.78 16 10 O -0.53 -12.85 14.24 5.31 0.08 -12.78 16 11 N -0.72 -14.47 5.07 -59.82 -0.30 -14.78 16 12 C 0.28 7.03 2.56 -69.08 -0.18 6.85 16 13 H 0.05 1.45 7.58 -51.93 -0.39 1.06 16 14 C -0.15 -3.65 9.26 37.16 0.34 -3.30 16 15 C -0.54 -13.88 8.73 -34.44 -0.30 -14.19 16 16 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 17 C 0.07 1.77 5.30 -17.82 -0.09 1.67 16 18 N -0.88 -24.53 11.32 55.43 0.63 -23.90 16 19 Si 0.90 20.30 29.54 -169.99 -5.02 15.28 16 20 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 21 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 22 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 23 N -0.48 -7.98 7.84 -12.00 -0.09 -8.07 16 24 C 0.19 2.40 10.62 -17.04 -0.18 2.22 16 25 H 0.08 0.48 5.62 -51.93 -0.29 0.18 16 26 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.14 1.34 7.72 -52.48 -0.41 0.94 16 29 H 0.14 1.07 8.06 -52.48 -0.42 0.65 16 30 H 0.41 4.22 8.71 -40.82 -0.36 3.86 16 31 H 0.39 6.47 8.56 -40.82 -0.35 6.12 16 32 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.09 2.44 6.07 -51.93 -0.32 2.12 16 34 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 35 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 36 H 0.17 1.60 5.93 -52.49 -0.31 1.29 16 LS Contribution 313.91 15.07 4.73 4.73 Total: -1.00 -34.03 313.91 -7.59 -41.62 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: -4.08 Total: 6.94 kcal Atomic # 6 Polarization: 10.67 SS G_CDS: -3.54 Total: 7.13 kcal Atomic # 7 Polarization: -56.78 SS G_CDS: 0.15 Total: -56.64 kcal Atomic # 8 Polarization: -19.22 SS G_CDS: 0.17 Total: -19.05 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.28 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -34.03 -7.59 -41.62 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001476397706.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.889 kcal (2) G-P(sol) polarization free energy of solvation -34.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds