Wall clock time and date at job start Mon Mar 30 2020 01:26:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.21301 * 119.99666 * 2 1 4 4 C 1.46849 * 120.00360 * 179.97438 * 2 1 3 5 5 C 1.40577 * 120.51192 * 179.97438 * 4 2 1 6 6 C 1.36831 * 118.46020 * 179.72252 * 5 4 2 7 7 C 1.39359 * 119.41260 * 0.28398 * 6 5 4 8 8 N 1.38824 * 119.50346 * 179.97438 * 7 6 5 9 9 C 1.34773 * 120.00147 * 174.89795 * 8 7 6 10 10 O 1.21564 * 120.00117 * 5.10141 * 9 8 7 11 11 N 1.34774 * 119.99668 * 185.09456 * 9 8 7 12 12 C 1.46501 * 119.99811 * 180.02562 * 11 9 8 13 13 H 1.09007 * 109.46865 * 324.99957 * 12 11 9 14 14 C 1.52996 * 109.47145 * 85.00163 * 12 11 9 15 15 C 1.50703 * 109.47287 * 205.00259 * 12 11 9 16 16 H 1.08000 * 119.99544 * 0.02562 * 15 12 11 17 17 C 1.37875 * 120.00235 * 179.97438 * 15 12 11 18 18 N 1.31515 * 119.99724 * 359.97438 * 17 15 12 19 19 Si 1.86801 * 120.00215 * 179.97438 * 17 15 12 20 20 H 1.48507 * 109.46655 * 90.00024 * 19 17 15 21 21 H 1.48492 * 109.47244 * 209.99783 * 19 17 15 22 22 H 1.48493 * 109.47037 * 330.00181 * 19 17 15 23 23 N 1.32584 * 120.99817 * 0.02562 * 7 6 5 24 24 C 1.31603 * 121.67529 * 359.97438 * 23 7 6 25 25 H 1.09005 * 109.46393 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47360 * 300.00084 * 1 2 3 27 27 H 1.08998 * 109.46903 * 60.00641 * 1 2 3 28 28 H 1.08003 * 120.77115 * 0.02562 * 5 4 2 29 29 H 1.08005 * 120.29940 * 180.29827 * 6 5 4 30 30 H 0.97003 * 119.99484 * 354.90416 * 8 7 6 31 31 H 0.97000 * 120.00676 * 0.02562 * 11 9 8 32 32 H 1.08993 * 109.47274 * 60.00263 * 14 12 11 33 33 H 1.09002 * 109.46687 * 180.02562 * 14 12 11 34 34 H 1.08999 * 109.47303 * 299.99662 * 14 12 11 35 35 H 0.97002 * 119.99976 * 179.97438 * 18 17 15 36 36 H 1.08001 * 119.76150 * 180.02562 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1135 1.0505 0.0000 4 6 2.2414 -1.2717 0.0006 5 6 3.6471 -1.2842 0.0000 6 6 4.2885 -2.4928 0.0064 7 6 3.5369 -3.6664 0.0072 8 7 4.1857 -4.8937 0.0131 9 6 3.4725 -6.0325 0.1177 10 8 2.2576 -5.9914 0.1135 11 7 4.1063 -7.2169 0.2269 12 6 3.3311 -8.4548 0.3401 13 1 2.4241 -8.2643 0.9139 14 6 2.9556 -8.9509 -1.0576 15 6 4.1575 -9.5029 1.0399 16 1 5.1597 -9.2699 1.3680 17 6 3.6336 -10.7587 1.2623 18 7 2.4126 -11.0418 0.8641 19 14 4.6582 -12.0580 2.1292 20 1 4.4277 -11.9742 3.5938 21 1 4.2648 -13.4046 1.6425 22 1 6.0966 -11.8280 1.8405 23 7 2.2116 -3.6286 0.0013 24 6 1.5529 -2.4893 -0.0049 25 1 -0.3632 -1.0278 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5137 -0.8900 28 1 4.2079 -0.3611 -0.0004 29 1 5.3676 -2.5371 0.0111 30 1 5.1524 -4.9316 -0.0579 31 1 5.0758 -7.2497 0.2306 32 1 3.8625 -9.1414 -1.6314 33 1 2.3784 -9.8717 -0.9734 34 1 2.3578 -8.1929 -1.5638 35 1 2.0442 -11.9254 1.0202 36 1 0.4729 -2.4945 -0.0092 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001476397706.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:46 Heat of formation + Delta-G solvation = -39.544007 kcal Electronic energy + Delta-G solvation = -20486.435326 eV Core-core repulsion = 17163.561884 eV Total energy + Delta-G solvation = -3322.873442 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.01328 -40.77233 -39.60815 -36.95590 -35.87206 -34.34050 -33.55416 -32.58051 -30.86672 -29.49483 -27.32712 -25.33369 -25.00014 -23.04537 -21.55138 -21.18760 -19.93644 -19.26971 -17.98164 -17.69752 -17.04568 -16.95801 -16.58853 -16.01266 -15.93141 -15.51665 -15.28876 -15.07614 -14.76509 -14.36661 -14.29674 -13.81084 -13.72549 -13.02449 -12.95796 -12.94064 -12.89483 -12.74690 -12.25914 -12.11832 -11.84800 -11.39776 -11.09927 -11.00379 -10.91539 -10.59657 -10.08623 -9.84098 -9.28047 -8.16577 -6.33887 -0.51114 0.31410 1.35853 1.45269 1.47141 1.54056 1.59449 2.23449 2.42268 2.91542 3.04197 3.14318 3.22607 3.60334 3.81879 3.87604 4.01060 4.24773 4.50726 4.64667 4.68677 4.76066 4.86185 4.94503 5.04316 5.10630 5.17903 5.27222 5.37620 5.59191 5.62619 5.70491 5.82136 6.06166 6.11323 6.52063 6.73659 6.88332 7.29843 7.36207 7.70746 8.90010 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.043700 B = 0.003164 C = 0.003058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.571463 B = 8848.821201 C = 9152.931440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.412 3.588 3 O -0.503 6.503 4 C -0.278 4.278 5 C 0.006 3.994 6 C -0.209 4.209 7 C 0.394 3.606 8 N -0.653 5.653 9 C 0.681 3.319 10 O -0.580 6.580 11 N -0.713 5.713 12 C 0.290 3.710 13 H -0.001 1.001 14 C -0.134 4.134 15 C -0.546 4.546 16 H 0.076 0.924 17 C 0.014 3.986 18 N -0.917 5.917 19 Si 0.973 3.027 20 H -0.279 1.279 21 H -0.285 1.285 22 H -0.259 1.259 23 N -0.531 5.531 24 C 0.180 3.820 25 H 0.097 0.903 26 H 0.107 0.893 27 H 0.108 0.892 28 H 0.162 0.838 29 H 0.178 0.822 30 H 0.433 0.567 31 H 0.404 0.596 32 H 0.041 0.959 33 H 0.067 0.933 34 H 0.010 0.990 35 H 0.266 0.734 36 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.932 18.372 -2.232 18.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.255 4.255 2 C 0.293 3.707 3 O -0.382 6.382 4 C -0.284 4.284 5 C -0.019 4.019 6 C -0.232 4.232 7 C 0.161 3.839 8 N -0.302 5.302 9 C 0.380 3.620 10 O -0.455 6.455 11 N -0.367 5.367 12 C 0.186 3.814 13 H 0.017 0.983 14 C -0.193 4.193 15 C -0.584 4.584 16 H 0.094 0.906 17 C -0.186 4.186 18 N -0.556 5.556 19 Si 0.798 3.202 20 H -0.205 1.205 21 H -0.210 1.210 22 H -0.183 1.183 23 N -0.246 5.246 24 C 0.020 3.980 25 H 0.116 0.884 26 H 0.126 0.874 27 H 0.127 0.873 28 H 0.180 0.820 29 H 0.196 0.804 30 H 0.273 0.727 31 H 0.239 0.761 32 H 0.060 0.940 33 H 0.086 0.914 34 H 0.029 0.971 35 H 0.075 0.925 36 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 2.599 17.815 -2.222 18.140 hybrid contribution 1.373 -0.392 0.340 1.468 sum 3.972 17.423 -1.882 17.969 Atomic orbital electron populations 1.22287 0.90868 1.06247 1.06136 1.22582 0.93044 0.86132 0.68914 1.90523 1.73045 1.35105 1.39577 1.21588 0.95974 0.96525 1.14263 1.21571 0.93263 0.98723 0.88365 1.21414 1.02851 0.89716 1.09233 1.18899 0.89233 0.85529 0.90243 1.42664 1.11364 1.02431 1.73781 1.16398 0.85678 0.81103 0.78783 1.90973 1.13037 1.85652 1.55814 1.45494 1.10405 1.04690 1.76157 1.18243 0.90612 0.79377 0.93128 0.98315 1.21917 0.99502 1.00507 0.97371 1.21536 1.01547 0.96668 1.38695 0.90631 1.25795 0.96126 1.00570 0.96083 1.70058 1.16331 1.22386 1.46778 0.85325 0.79172 0.77530 0.78177 1.20486 1.21044 1.18252 1.67824 1.08286 1.30824 1.17635 1.23578 1.01378 0.85076 0.87930 0.88421 0.87447 0.87348 0.82021 0.80416 0.72664 0.76087 0.93980 0.91434 0.97089 0.92528 0.79601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.31 10.20 71.24 0.73 -1.59 16 2 C 0.41 7.97 7.22 27.94 0.20 8.17 16 3 O -0.50 -12.72 17.15 -3.09 -0.05 -12.77 16 4 C -0.28 -5.92 5.89 -20.06 -0.12 -6.04 16 5 C 0.01 0.12 9.66 22.51 0.22 0.34 16 6 C -0.21 -4.03 9.86 22.21 0.22 -3.81 16 7 C 0.39 11.15 7.41 133.12 0.99 12.14 16 8 N -0.65 -18.53 5.37 -322.27 -1.73 -20.26 16 9 C 0.68 27.44 8.48 179.06 1.52 28.96 16 10 O -0.58 -29.20 14.24 -3.92 -0.06 -29.26 16 11 N -0.71 -28.75 5.07 -461.43 -2.34 -31.09 16 12 C 0.29 14.85 2.56 44.24 0.11 14.96 16 13 H 0.00 -0.07 7.58 -2.38 -0.02 -0.08 16 14 C -0.13 -6.75 9.26 71.98 0.67 -6.08 16 15 C -0.55 -28.29 8.73 25.60 0.22 -28.07 16 16 H 0.08 3.61 7.74 -2.91 -0.02 3.59 16 17 C 0.01 0.76 5.30 84.65 0.45 1.21 16 18 N -0.92 -52.14 11.32 21.45 0.24 -51.90 16 19 Si 0.97 41.24 29.54 68.60 2.03 43.27 16 20 H -0.28 -11.73 7.11 99.48 0.71 -11.03 16 21 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 22 H -0.26 -10.25 7.11 99.48 0.71 -9.54 16 23 N -0.53 -17.75 7.84 -191.87 -1.50 -19.25 16 24 C 0.18 4.44 10.62 85.12 0.90 5.35 16 25 H 0.10 0.89 5.62 -2.38 -0.01 0.87 16 26 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 27 H 0.11 1.01 8.14 -2.39 -0.02 1.00 16 28 H 0.16 2.57 7.72 -2.91 -0.02 2.54 16 29 H 0.18 1.97 8.06 -2.91 -0.02 1.95 16 30 H 0.43 7.95 8.71 -92.71 -0.81 7.14 16 31 H 0.40 13.05 8.56 -92.71 -0.79 12.26 16 32 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 33 H 0.07 3.73 6.07 -2.39 -0.01 3.71 16 34 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 35 H 0.27 14.28 8.31 -92.71 -0.77 13.51 16 36 H 0.19 3.47 5.93 -2.91 -0.02 3.46 16 Total: -1.00 -76.43 313.91 2.23 -74.20 By element: Atomic # 1 Polarization: 21.97 SS G_CDS: -0.46 Total: 21.51 kcal Atomic # 6 Polarization: 19.44 SS G_CDS: 6.11 Total: 25.55 kcal Atomic # 7 Polarization: -117.16 SS G_CDS: -5.33 Total: -122.50 kcal Atomic # 8 Polarization: -41.92 SS G_CDS: -0.11 Total: -42.03 kcal Atomic # 14 Polarization: 41.24 SS G_CDS: 2.03 Total: 43.27 kcal Total: -76.43 2.23 -74.20 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001476397706.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.655 kcal (2) G-P(sol) polarization free energy of solvation -76.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds