Wall clock time and date at job start Mon Mar 30 2020 02:00:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36939 * 119.99723 * 2 1 4 4 H 1.07994 * 120.00280 * 202.34160 * 3 2 1 5 5 C 1.38814 * 119.99954 * 22.34305 * 3 2 1 6 6 N 1.31622 * 120.00350 * 11.34869 * 5 3 2 7 7 Si 1.86796 * 120.00004 * 191.34392 * 5 3 2 8 8 H 1.48502 * 109.47078 * 60.00246 * 7 5 3 9 9 H 1.48496 * 109.47492 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47592 * 300.00394 * 7 5 3 11 11 C 1.46493 * 120.00445 * 179.97438 * 2 1 3 12 12 C 1.53003 * 109.47584 * 270.00369 * 11 2 1 13 13 N 1.46493 * 109.47194 * 179.97438 * 12 11 2 14 14 C 1.34774 * 120.00069 * 180.02562 * 13 12 11 15 15 O 1.21729 * 119.99668 * 359.97438 * 14 13 12 16 16 C 1.46493 * 120.00459 * 180.02562 * 14 13 12 17 17 C 1.37781 * 125.86092 * 179.97438 * 16 14 13 18 18 C 1.39939 * 107.68937 * 180.02562 * 17 16 14 19 19 O 1.35109 * 145.14343 * 180.02562 * 18 17 16 20 20 C 1.34380 * 109.62951 * 179.97438 * 19 18 17 21 21 C 1.34469 * 109.44267 * 0.25812 * 20 19 18 22 22 C 1.39138 * 107.40154 * 359.97438 * 18 17 16 23 23 N 1.37116 * 108.11209 * 0.02562 * 22 18 17 24 24 H 0.96997 * 125.74415 * 180.02562 * 23 22 18 25 25 H 1.09002 * 109.47224 * 274.20833 * 1 2 3 26 26 H 1.08999 * 109.47532 * 34.21158 * 1 2 3 27 27 H 1.09001 * 109.46839 * 154.21305 * 1 2 3 28 28 H 0.96998 * 120.00442 * 179.97438 * 6 5 3 29 29 H 1.09005 * 109.47026 * 149.99956 * 11 2 1 30 30 H 1.09003 * 109.47026 * 30.00272 * 11 2 1 31 31 H 1.09001 * 109.46832 * 59.99924 * 12 11 2 32 32 H 1.09003 * 109.46859 * 300.00004 * 12 11 2 33 33 H 0.97004 * 120.00362 * 359.97438 * 13 12 11 34 34 H 1.07999 * 126.15765 * 0.02562 * 17 16 14 35 35 H 1.07993 * 125.28011 * 180.02562 * 20 19 18 36 36 H 1.08000 * 126.40972 * 179.71287 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1687 1.2212 -0.3555 5 6 1.5336 2.3430 0.4570 6 7 0.3839 2.2691 1.0936 7 14 2.3364 4.0048 0.1687 8 1 2.4913 4.2332 -1.2904 9 1 1.4842 5.0736 0.7487 10 1 3.6717 4.0289 0.8179 11 6 2.1975 -1.2686 0.0006 12 6 2.4525 -1.7098 1.4432 13 7 3.1846 -2.9787 1.4437 14 6 3.5210 -3.5622 2.6111 15 8 3.2169 -3.0345 3.6651 16 6 4.2535 -4.8308 2.6117 17 6 4.6570 -5.5294 3.7286 18 6 5.3224 -6.6807 3.2927 19 8 5.9695 -7.8013 3.6811 20 6 6.3679 -8.4907 2.5986 21 6 5.9948 -7.8329 1.4867 22 6 5.3130 -6.6651 1.9015 23 7 4.6585 -5.5319 1.4922 24 1 4.5050 -5.2673 0.5718 25 1 -0.3634 0.0754 1.0249 26 1 -0.3634 0.8498 -0.5778 27 1 -0.3633 -0.9253 -0.4471 28 1 -0.0463 3.0775 1.4132 29 1 3.1500 -1.1384 -0.5134 30 1 1.6085 -2.0285 -0.5130 31 1 1.5001 -1.8400 1.9571 32 1 3.0416 -0.9499 1.9568 33 1 3.4265 -3.3994 0.6038 34 1 4.4898 -5.2404 4.7557 35 1 6.9076 -9.4259 2.6185 36 1 6.1791 -8.1401 0.4679 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001480870661.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:15 Heat of formation + Delta-G solvation = 53.724380 kcal Electronic energy + Delta-G solvation = -20372.949137 eV Core-core repulsion = 17054.120116 eV Total energy + Delta-G solvation = -3318.829021 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.09922 -40.14807 -38.50870 -36.11232 -34.29406 -32.56773 -31.46036 -30.74893 -29.09099 -27.65553 -25.91130 -24.22226 -22.56355 -21.83405 -20.88507 -20.73139 -19.94149 -18.52131 -17.23283 -16.76413 -16.43963 -16.02526 -15.40992 -15.18367 -14.75044 -14.46506 -13.95496 -13.76467 -13.61803 -13.37620 -13.14111 -13.00359 -12.40399 -12.35167 -11.93326 -11.26684 -10.93352 -10.88171 -10.65109 -10.36160 -10.27593 -10.09176 -10.05782 -9.87063 -8.84099 -8.79140 -8.59910 -8.03160 -6.87476 -5.78319 -3.26190 0.86006 2.09033 2.30761 2.48024 2.72691 3.32671 3.37647 3.38498 3.42645 3.43699 4.35714 4.46075 4.59903 4.84517 5.07019 5.27628 5.31570 5.36440 5.56292 5.60696 5.79304 5.87559 5.92208 6.11969 6.18915 6.40292 6.52602 6.63368 6.67870 6.87493 6.95236 7.10556 7.32552 7.61059 7.68060 7.76149 8.25824 8.33659 9.16601 9.78271 10.26073 11.26628 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.039101 B = 0.002982 C = 0.002964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.916981 B = 9387.859154 C = 9445.978291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.162 3.838 2 N -0.595 5.595 3 C -0.264 4.264 4 H 0.070 0.930 5 C 0.005 3.995 6 N -0.905 5.905 7 Si 0.908 3.092 8 H -0.284 1.284 9 H -0.289 1.289 10 H -0.282 1.282 11 C 0.144 3.856 12 C 0.094 3.906 13 N -0.720 5.720 14 C 0.580 3.420 15 O -0.520 6.520 16 C 0.016 3.984 17 C -0.085 4.085 18 C -0.039 4.039 19 O -0.169 6.169 20 C 0.007 3.993 21 C -0.202 4.202 22 C 0.006 3.994 23 N -0.532 5.532 24 H 0.420 0.580 25 H 0.030 0.970 26 H 0.048 0.952 27 H -0.002 1.002 28 H 0.255 0.745 29 H 0.048 0.952 30 H 0.042 0.958 31 H 0.065 0.935 32 H 0.073 0.927 33 H 0.390 0.610 34 H 0.161 0.839 35 H 0.211 0.789 36 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.758 -20.754 -1.468 22.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.318 5.318 3 C -0.393 4.393 4 H 0.088 0.912 5 C -0.194 4.194 6 N -0.549 5.549 7 Si 0.738 3.262 8 H -0.210 1.210 9 H -0.215 1.215 10 H -0.208 1.208 11 C 0.015 3.985 12 C -0.032 4.032 13 N -0.371 5.371 14 C 0.365 3.635 15 O -0.396 6.396 16 C -0.096 4.096 17 C -0.113 4.113 18 C -0.091 4.091 19 O -0.066 6.066 20 C -0.060 4.060 21 C -0.223 4.223 22 C -0.107 4.107 23 N -0.136 5.136 24 H 0.258 0.742 25 H 0.049 0.951 26 H 0.066 0.934 27 H 0.016 0.984 28 H 0.065 0.935 29 H 0.067 0.933 30 H 0.060 0.940 31 H 0.083 0.917 32 H 0.092 0.908 33 H 0.222 0.778 34 H 0.178 0.822 35 H 0.228 0.772 36 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 9.361 -20.146 -0.483 22.220 hybrid contribution 0.495 0.745 -1.096 1.415 sum 9.857 -19.401 -1.578 21.819 Atomic orbital electron populations 1.20865 0.82060 0.95796 0.99572 1.43919 1.02092 1.00270 1.85476 1.19172 0.98193 0.85200 1.36762 0.91237 1.25078 0.97615 0.98744 0.97964 1.70053 1.17713 1.27478 1.39670 0.86284 0.78608 0.83463 0.77859 1.21006 1.21527 1.20810 1.21001 0.96394 0.89073 0.92018 1.22665 0.95843 0.82132 1.02526 1.46102 1.58294 1.25610 1.07045 1.16905 0.79286 0.82397 0.84894 1.90902 1.54352 1.63380 1.30942 1.20527 1.07682 0.96522 0.84906 1.19924 1.01750 0.90672 0.98915 1.19301 1.05931 0.91978 0.91872 1.84019 1.60026 1.29110 1.33485 1.24029 1.01206 0.98121 0.82682 1.20551 1.06860 0.94534 1.00371 1.19018 1.04799 0.92672 0.94208 1.41171 1.46627 1.17587 1.08246 0.74156 0.95123 0.93351 0.98370 0.93483 0.93327 0.93985 0.91703 0.90819 0.77778 0.82165 0.77249 0.82945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.91 9.01 59.85 0.54 4.45 16 2 N -0.60 -14.57 2.93 -181.12 -0.53 -15.10 16 3 C -0.26 -7.11 9.67 -15.06 -0.15 -7.26 16 4 H 0.07 1.82 7.84 -52.49 -0.41 1.40 16 5 C 0.00 0.14 5.13 -17.43 -0.09 0.05 16 6 N -0.91 -26.23 10.59 55.49 0.59 -25.64 16 7 Si 0.91 21.70 29.57 -169.99 -5.03 16.67 16 8 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 9 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 10 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 11 C 0.14 2.73 5.82 -4.04 -0.02 2.71 16 12 C 0.09 1.76 6.00 -4.04 -0.02 1.73 16 13 N -0.72 -10.44 5.55 -61.68 -0.34 -10.78 16 14 C 0.58 9.29 7.78 -12.94 -0.10 9.19 16 15 O -0.52 -10.52 16.87 5.16 0.09 -10.43 16 16 C 0.02 0.22 7.03 -81.86 -0.58 -0.36 16 17 C -0.09 -1.15 10.58 -39.11 -0.41 -1.56 16 18 C -0.04 -0.50 8.20 -38.61 -0.32 -0.82 16 19 O -0.17 -1.91 10.68 3.23 0.03 -1.87 16 20 C 0.01 0.06 12.02 29.40 0.35 0.41 16 21 C -0.20 -1.68 10.89 -39.69 -0.43 -2.11 16 22 C 0.01 0.07 8.11 -83.95 -0.68 -0.61 16 23 N -0.53 -5.55 6.08 -7.04 -0.04 -5.60 16 24 H 0.42 3.05 8.16 -40.82 -0.33 2.72 16 25 H 0.03 0.80 7.42 -51.93 -0.39 0.42 16 26 H 0.05 1.25 7.19 -51.93 -0.37 0.88 16 27 H 0.00 -0.05 7.84 -51.93 -0.41 -0.45 16 28 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 29 H 0.05 0.87 8.03 -51.93 -0.42 0.45 16 30 H 0.04 0.70 7.86 -51.93 -0.41 0.29 16 31 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 32 H 0.07 1.62 8.14 -51.93 -0.42 1.19 16 33 H 0.39 4.15 7.56 -40.82 -0.31 3.84 16 34 H 0.16 2.05 8.06 -52.49 -0.42 1.62 16 35 H 0.21 0.58 8.06 -52.49 -0.42 0.16 16 36 H 0.15 0.84 8.06 -52.49 -0.42 0.42 16 LS Contribution 314.48 15.07 4.74 4.74 Total: -1.00 -33.89 314.48 -6.70 -40.59 By element: Atomic # 1 Polarization: 5.91 SS G_CDS: -4.29 Total: 1.61 kcal Atomic # 6 Polarization: 7.72 SS G_CDS: -1.91 Total: 5.81 kcal Atomic # 7 Polarization: -56.79 SS G_CDS: -0.33 Total: -57.12 kcal Atomic # 8 Polarization: -12.43 SS G_CDS: 0.12 Total: -12.31 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.03 Total: 16.67 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -33.89 -6.70 -40.59 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480870661.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.314 kcal (2) G-P(sol) polarization free energy of solvation -33.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.589 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds