Wall clock time and date at job start Mon Mar 30 2020 02:00:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36939 * 119.99723 * 2 1 4 4 H 1.07994 * 120.00280 * 202.34160 * 3 2 1 5 5 C 1.38814 * 119.99954 * 22.34305 * 3 2 1 6 6 N 1.31622 * 120.00350 * 11.34869 * 5 3 2 7 7 Si 1.86796 * 120.00004 * 191.34392 * 5 3 2 8 8 H 1.48502 * 109.47078 * 60.00246 * 7 5 3 9 9 H 1.48496 * 109.47492 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47592 * 300.00394 * 7 5 3 11 11 C 1.46493 * 120.00445 * 179.97438 * 2 1 3 12 12 C 1.53003 * 109.47584 * 270.00369 * 11 2 1 13 13 N 1.46493 * 109.47194 * 179.97438 * 12 11 2 14 14 C 1.34774 * 120.00069 * 180.02562 * 13 12 11 15 15 O 1.21729 * 119.99668 * 359.97438 * 14 13 12 16 16 C 1.46493 * 120.00459 * 180.02562 * 14 13 12 17 17 C 1.37781 * 125.86092 * 179.97438 * 16 14 13 18 18 C 1.39939 * 107.68937 * 180.02562 * 17 16 14 19 19 O 1.35109 * 145.14343 * 180.02562 * 18 17 16 20 20 C 1.34380 * 109.62951 * 179.97438 * 19 18 17 21 21 C 1.34469 * 109.44267 * 0.25812 * 20 19 18 22 22 C 1.39138 * 107.40154 * 359.97438 * 18 17 16 23 23 N 1.37116 * 108.11209 * 0.02562 * 22 18 17 24 24 H 0.96997 * 125.74415 * 180.02562 * 23 22 18 25 25 H 1.09002 * 109.47224 * 274.20833 * 1 2 3 26 26 H 1.08999 * 109.47532 * 34.21158 * 1 2 3 27 27 H 1.09001 * 109.46839 * 154.21305 * 1 2 3 28 28 H 0.96998 * 120.00442 * 179.97438 * 6 5 3 29 29 H 1.09005 * 109.47026 * 149.99956 * 11 2 1 30 30 H 1.09003 * 109.47026 * 30.00272 * 11 2 1 31 31 H 1.09001 * 109.46832 * 59.99924 * 12 11 2 32 32 H 1.09003 * 109.46859 * 300.00004 * 12 11 2 33 33 H 0.97004 * 120.00362 * 359.97438 * 13 12 11 34 34 H 1.07999 * 126.15765 * 0.02562 * 17 16 14 35 35 H 1.07993 * 125.28011 * 180.02562 * 20 19 18 36 36 H 1.08000 * 126.40972 * 179.71287 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1687 1.2212 -0.3555 5 6 1.5336 2.3430 0.4570 6 7 0.3839 2.2691 1.0936 7 14 2.3364 4.0048 0.1687 8 1 2.4913 4.2332 -1.2904 9 1 1.4842 5.0736 0.7487 10 1 3.6717 4.0289 0.8179 11 6 2.1975 -1.2686 0.0006 12 6 2.4525 -1.7098 1.4432 13 7 3.1846 -2.9787 1.4437 14 6 3.5210 -3.5622 2.6111 15 8 3.2169 -3.0345 3.6651 16 6 4.2535 -4.8308 2.6117 17 6 4.6570 -5.5294 3.7286 18 6 5.3224 -6.6807 3.2927 19 8 5.9695 -7.8013 3.6811 20 6 6.3679 -8.4907 2.5986 21 6 5.9948 -7.8329 1.4867 22 6 5.3130 -6.6651 1.9015 23 7 4.6585 -5.5319 1.4922 24 1 4.5050 -5.2673 0.5718 25 1 -0.3634 0.0754 1.0249 26 1 -0.3634 0.8498 -0.5778 27 1 -0.3633 -0.9253 -0.4471 28 1 -0.0463 3.0775 1.4132 29 1 3.1500 -1.1384 -0.5134 30 1 1.6085 -2.0285 -0.5130 31 1 1.5001 -1.8400 1.9571 32 1 3.0416 -0.9499 1.9568 33 1 3.4265 -3.3994 0.6038 34 1 4.4898 -5.2404 4.7557 35 1 6.9076 -9.4259 2.6185 36 1 6.1791 -8.1401 0.4679 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001480870661.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:15 Heat of formation + Delta-G solvation = 28.859543 kcal Electronic energy + Delta-G solvation = -20374.027357 eV Core-core repulsion = 17054.120116 eV Total energy + Delta-G solvation = -3319.907241 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.91220 -41.24812 -39.64521 -37.86915 -35.87279 -33.41164 -33.25357 -31.72421 -30.44596 -28.87428 -27.92253 -25.62416 -23.94256 -22.70727 -22.41137 -21.72296 -21.16313 -19.46021 -18.78817 -18.11094 -17.29216 -17.23052 -16.81662 -16.56179 -16.40758 -15.56853 -15.52154 -15.15631 -14.72809 -14.54183 -14.50808 -14.15720 -14.03853 -13.64879 -13.12746 -12.78819 -12.76567 -12.66401 -12.50797 -12.12535 -12.02813 -11.80586 -11.44004 -11.07388 -10.66396 -10.26102 -9.65840 -8.89547 -8.87851 -7.85801 -5.35662 -0.07763 1.19887 1.46878 1.48328 1.49367 1.55362 1.69808 1.74442 2.18679 2.26313 2.51825 3.29730 3.59824 3.68396 3.83885 3.96398 4.21574 4.25342 4.32765 4.48867 4.63531 4.71883 4.77096 4.84069 5.01774 5.03453 5.06651 5.31245 5.32917 5.44466 5.55065 5.62018 5.72414 6.14358 6.29180 6.31360 6.47166 7.02885 7.12020 7.82324 8.24357 9.17656 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.039101 B = 0.002982 C = 0.002964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.916981 B = 9387.859154 C = 9445.978291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.173 3.827 2 N -0.614 5.614 3 C -0.269 4.269 4 H 0.077 0.923 5 C -0.054 4.054 6 N -0.939 5.939 7 Si 0.971 3.029 8 H -0.274 1.274 9 H -0.296 1.296 10 H -0.277 1.277 11 C 0.146 3.854 12 C 0.114 3.886 13 N -0.702 5.702 14 C 0.584 3.416 15 O -0.572 6.572 16 C -0.002 4.002 17 C -0.094 4.094 18 C -0.077 4.077 19 O -0.187 6.187 20 C 0.028 3.972 21 C -0.213 4.213 22 C 0.017 3.983 23 N -0.516 5.516 24 H 0.436 0.564 25 H -0.001 1.001 26 H 0.022 0.978 27 H 0.037 0.963 28 H 0.248 0.752 29 H 0.067 0.933 30 H 0.077 0.923 31 H 0.040 0.960 32 H 0.036 0.964 33 H 0.413 0.587 34 H 0.154 0.846 35 H 0.260 0.740 36 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.768 -23.380 -3.604 26.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.336 5.336 3 C -0.399 4.399 4 H 0.095 0.905 5 C -0.249 4.249 6 N -0.585 5.585 7 Si 0.799 3.201 8 H -0.199 1.199 9 H -0.223 1.223 10 H -0.203 1.203 11 C 0.019 3.981 12 C -0.012 4.012 13 N -0.354 5.354 14 C 0.372 3.628 15 O -0.451 6.451 16 C -0.115 4.115 17 C -0.122 4.122 18 C -0.128 4.128 19 O -0.085 6.085 20 C -0.039 4.039 21 C -0.234 4.234 22 C -0.098 4.098 23 N -0.122 5.122 24 H 0.277 0.723 25 H 0.018 0.982 26 H 0.041 0.959 27 H 0.055 0.945 28 H 0.058 0.942 29 H 0.085 0.915 30 H 0.095 0.905 31 H 0.059 0.941 32 H 0.055 0.945 33 H 0.249 0.751 34 H 0.171 0.829 35 H 0.276 0.724 36 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 11.402 -22.813 -2.693 25.645 hybrid contribution -0.015 1.309 -0.438 1.381 sum 11.388 -21.503 -3.131 24.533 Atomic orbital electron populations 1.20622 0.82395 0.96557 0.97575 1.44163 1.02377 1.01562 1.85548 1.19566 0.98437 0.86380 1.35488 0.90499 1.25870 0.98405 1.02178 0.98488 1.70236 1.19243 1.27690 1.41331 0.85290 0.77535 0.79274 0.78027 1.19923 1.22268 1.20326 1.21159 0.97309 0.87693 0.91943 1.22082 0.94399 0.82974 1.01787 1.45694 1.57507 1.24158 1.08003 1.17161 0.78582 0.82877 0.84212 1.90873 1.56493 1.64995 1.32752 1.19846 1.09468 0.96072 0.86068 1.20015 1.01806 0.91482 0.98940 1.19348 1.07712 0.92834 0.92928 1.84028 1.60266 1.28940 1.35289 1.25140 0.98860 0.98456 0.81403 1.21023 1.06740 0.93303 1.02315 1.19544 1.03547 0.92882 0.93810 1.41017 1.45825 1.17026 1.08285 0.72290 0.98245 0.95919 0.94481 0.94239 0.91499 0.90495 0.94141 0.94528 0.75074 0.82868 0.72420 0.79675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 8.44 9.01 127.77 1.15 9.59 16 2 N -0.61 -29.81 2.93 -726.95 -2.13 -31.93 16 3 C -0.27 -14.46 9.67 84.03 0.81 -13.65 16 4 H 0.08 3.94 7.84 -2.91 -0.02 3.92 16 5 C -0.05 -3.04 5.13 84.86 0.44 -2.60 16 6 N -0.94 -56.08 10.59 21.65 0.23 -55.85 16 7 Si 0.97 45.08 29.57 68.60 2.03 47.11 16 8 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 9 H -0.30 -13.97 7.11 99.48 0.71 -13.26 16 10 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 11 C 0.15 5.28 5.82 86.38 0.50 5.79 16 12 C 0.11 4.31 6.00 86.38 0.52 4.83 16 13 N -0.70 -19.81 5.55 -467.25 -2.59 -22.40 16 14 C 0.58 18.99 7.78 86.39 0.67 19.66 16 15 O -0.57 -24.29 16.87 -4.44 -0.07 -24.37 16 16 C 0.00 -0.05 7.03 40.19 0.28 0.23 16 17 C -0.09 -2.60 10.58 22.57 0.24 -2.36 16 18 C -0.08 -1.90 8.20 22.90 0.19 -1.71 16 19 O -0.19 -3.85 10.68 -11.34 -0.12 -3.97 16 20 C 0.03 0.31 12.02 66.96 0.80 1.12 16 21 C -0.21 -2.65 10.89 22.20 0.24 -2.41 16 22 C 0.02 0.33 8.11 39.32 0.32 0.65 16 23 N -0.52 -9.73 6.08 -176.18 -1.07 -10.81 16 24 H 0.44 5.05 8.16 -92.71 -0.76 4.30 16 25 H 0.00 -0.04 7.42 -2.39 -0.02 -0.06 16 26 H 0.02 1.18 7.19 -2.39 -0.02 1.16 16 27 H 0.04 1.48 7.84 -2.39 -0.02 1.46 16 28 H 0.25 14.51 8.31 -92.71 -0.77 13.74 16 29 H 0.07 2.20 8.03 -2.38 -0.02 2.19 16 30 H 0.08 2.28 7.86 -2.39 -0.02 2.27 16 31 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.41 7.80 7.56 -92.71 -0.70 7.10 16 34 H 0.15 4.22 8.06 -2.91 -0.02 4.20 16 35 H 0.26 -0.06 8.06 -2.91 -0.02 -0.08 16 36 H 0.19 1.04 8.06 -2.91 -0.02 1.02 16 Total: -1.00 -77.17 314.48 2.11 -75.06 By element: Atomic # 1 Polarization: 8.36 SS G_CDS: -0.33 Total: 8.03 kcal Atomic # 6 Polarization: 12.96 SS G_CDS: 6.17 Total: 19.13 kcal Atomic # 7 Polarization: -115.42 SS G_CDS: -5.56 Total: -120.99 kcal Atomic # 8 Polarization: -28.14 SS G_CDS: -0.20 Total: -28.34 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.11 kcal Total: -77.17 2.11 -75.06 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480870661.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.921 kcal (2) G-P(sol) polarization free energy of solvation -77.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.062 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds