Wall clock time and date at job start Mon Mar 30 2020 01:39:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.21283 * 119.99620 * 2 1 4 4 N 1.34771 * 120.00099 * 179.73052 * 2 1 3 5 5 C 1.39313 * 119.99657 * 174.44641 * 4 2 1 6 6 C 1.39074 * 120.59518 * 335.34387 * 5 4 2 7 7 N 1.31606 * 120.77485 * 179.75501 * 6 5 4 8 8 C 1.31917 * 122.16119 * 0.53712 * 7 6 5 9 9 C 1.37982 * 121.10619 * 359.72991 * 8 7 6 10 10 C 1.39929 * 119.08090 * 359.97438 * 9 8 7 11 11 C 1.47820 * 120.96689 * 180.02562 * 10 9 8 12 12 O 1.21552 * 120.00418 * 125.87731 * 11 10 9 13 13 N 1.34776 * 119.99604 * 305.87072 * 11 10 9 14 14 C 1.46500 * 120.00252 * 354.71397 * 13 11 10 15 15 C 1.46499 * 120.00103 * 174.71059 * 13 11 10 16 16 C 1.50706 * 109.47215 * 90.00029 * 15 13 11 17 17 H 1.07996 * 119.99629 * 0.02562 * 16 15 13 18 18 C 1.37871 * 120.00456 * 179.97438 * 16 15 13 19 19 N 1.31507 * 120.00321 * 180.02562 * 18 16 15 20 20 Si 1.86802 * 119.99772 * 0.02562 * 18 16 15 21 21 H 1.48499 * 109.47665 * 89.99505 * 20 18 16 22 22 H 1.48508 * 109.47233 * 209.99825 * 20 18 16 23 23 H 1.48503 * 109.46904 * 329.99026 * 20 18 16 24 24 H 1.08998 * 109.47351 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.47129 * 120.00095 * 1 2 3 26 26 H 1.08997 * 109.46326 * 239.99434 * 1 2 3 27 27 H 0.96995 * 120.00362 * 354.44748 * 4 2 1 28 28 H 1.08001 * 119.61699 * 359.97438 * 6 5 4 29 29 H 1.08003 * 119.44981 * 179.75102 * 8 7 6 30 30 H 1.07998 * 120.45600 * 180.02562 * 9 8 7 31 31 H 1.08998 * 109.47099 * 94.88339 * 14 13 11 32 32 H 1.08999 * 109.47184 * 214.88113 * 14 13 11 33 33 H 1.08998 * 109.47108 * 334.88271 * 14 13 11 34 34 H 1.08991 * 109.47539 * 210.00138 * 15 13 11 35 35 H 1.09002 * 109.47283 * 330.00386 * 15 13 11 36 36 H 0.97000 * 120.00197 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1671 0.0055 5 6 3.5691 -1.1704 -0.1113 6 6 4.2303 -0.1121 -0.7253 7 7 5.5420 -0.1093 -0.8332 8 6 6.2859 -1.1003 -0.3807 9 6 5.7164 -2.1943 0.2379 10 6 4.3257 -2.2453 0.3843 11 6 3.6718 -3.3970 1.0410 12 8 2.9166 -3.2153 1.9760 13 7 3.9129 -4.6485 0.6028 14 6 4.7298 -4.8608 -0.5946 15 6 3.3581 -5.7967 1.3240 16 6 1.9998 -6.1329 0.7644 17 1 1.5910 -5.5499 -0.0476 18 6 1.2796 -7.1854 1.2882 19 7 0.0945 -7.4791 0.7995 20 14 1.9871 -8.1943 2.6922 21 1 1.5789 -7.5943 3.9878 22 1 1.4759 -9.5861 2.6083 23 1 3.4690 -8.2047 2.5964 24 1 -0.3634 1.0276 0.0005 25 1 -0.3633 -0.5138 -0.8900 26 1 -0.3632 -0.5139 0.8899 27 1 1.6994 -2.0048 0.0907 28 1 3.6611 0.7188 -1.1150 29 1 7.3588 -1.0545 -0.4962 30 1 6.3355 -2.9995 0.6048 31 1 5.7640 -5.0414 -0.3016 32 1 4.3520 -5.7231 -1.1440 33 1 4.6812 -3.9760 -1.2292 34 1 4.0213 -6.6538 1.2077 35 1 3.2645 -5.5507 2.3818 36 1 -0.4123 -8.2194 1.1683 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001542367426.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:08 Heat of formation + Delta-G solvation = -23.102269 kcal Electronic energy + Delta-G solvation = -21524.680426 eV Core-core repulsion = 18202.519952 eV Total energy + Delta-G solvation = -3322.160475 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.13224 -39.43783 -38.59148 -35.41363 -34.92613 -32.91794 -32.09258 -31.11461 -28.96943 -28.49358 -26.30012 -24.57401 -23.67082 -22.21667 -20.74234 -19.45013 -17.77070 -17.36359 -17.17842 -17.04383 -16.17880 -15.57949 -15.25811 -14.99244 -14.50323 -14.39034 -14.06914 -13.75527 -13.63091 -13.12672 -12.89233 -12.66484 -12.48950 -12.39601 -12.23215 -12.04897 -11.65466 -11.09706 -11.07494 -10.65492 -10.29384 -10.07026 -9.95350 -9.67629 -9.55441 -9.18670 -8.71264 -8.28411 -7.94597 -6.21393 -4.21402 0.88194 1.04603 2.47235 2.94416 3.01624 3.20278 3.26109 3.28352 3.53312 3.83867 4.28427 4.53677 4.56410 4.65910 4.77439 4.92732 5.11374 5.15289 5.21985 5.29669 5.46376 5.54682 5.70923 5.77931 5.79178 5.95571 6.04657 6.13509 6.52035 6.69948 6.75422 7.08298 7.22616 7.45455 7.84797 7.95112 8.00428 8.29917 8.61914 8.79712 9.38132 10.91553 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.019042 B = 0.005709 C = 0.004687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1470.078126 B = 4903.622245 C = 5972.126148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.517 3.483 3 O -0.530 6.530 4 N -0.657 5.657 5 C 0.142 3.858 6 C 0.088 3.912 7 N -0.457 5.457 8 C 0.067 3.933 9 C -0.121 4.121 10 C -0.107 4.107 11 C 0.546 3.454 12 O -0.524 6.524 13 N -0.584 5.584 14 C 0.080 3.920 15 C 0.215 3.785 16 C -0.532 4.532 17 H 0.075 0.925 18 C 0.075 3.925 19 N -0.894 5.894 20 Si 0.876 3.124 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.266 1.266 24 H 0.097 0.903 25 H 0.095 0.905 26 H 0.097 0.903 27 H 0.423 0.577 28 H 0.179 0.821 29 H 0.160 0.840 30 H 0.142 0.858 31 H 0.050 0.950 32 H 0.078 0.922 33 H 0.061 0.939 34 H 0.035 0.965 35 H 0.038 0.962 36 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.714 9.467 -4.176 12.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.307 3.693 3 O -0.406 6.406 4 N -0.301 5.301 5 C 0.042 3.958 6 C -0.073 4.073 7 N -0.166 5.166 8 C -0.089 4.089 9 C -0.142 4.142 10 C -0.121 4.121 11 C 0.331 3.669 12 O -0.401 6.401 13 N -0.315 5.315 14 C -0.063 4.063 15 C 0.095 3.905 16 C -0.571 4.571 17 H 0.093 0.907 18 C -0.128 4.128 19 N -0.532 5.532 20 Si 0.702 3.298 21 H -0.198 1.198 22 H -0.209 1.209 23 H -0.191 1.191 24 H 0.116 0.884 25 H 0.114 0.886 26 H 0.115 0.885 27 H 0.262 0.738 28 H 0.196 0.804 29 H 0.177 0.823 30 H 0.160 0.840 31 H 0.069 0.931 32 H 0.097 0.903 33 H 0.080 0.920 34 H 0.052 0.948 35 H 0.056 0.944 36 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 7.883 10.845 -4.060 14.009 hybrid contribution -0.374 -1.980 1.192 2.341 sum 7.509 8.865 -2.868 11.967 Atomic orbital electron populations 1.21939 0.90012 1.05948 1.05415 1.21105 0.91283 0.82586 0.74353 1.90671 1.70504 1.31280 1.48156 1.43548 1.04707 1.11290 1.70556 1.18858 0.84271 0.95853 0.96792 1.23207 0.90156 0.97668 0.96264 1.67583 1.06234 1.26401 1.16402 1.22617 1.00348 0.89396 0.96514 1.22154 0.93100 1.00128 0.98807 1.20376 0.94443 0.96651 1.00636 1.18018 0.82029 0.82628 0.84177 1.90810 1.35591 1.84741 1.28909 1.47828 1.49990 1.06184 1.27509 1.21779 0.94333 1.02653 0.87579 1.19758 0.94973 0.82694 0.93111 1.21241 1.00281 1.15538 1.19996 0.90739 1.24836 0.94606 0.96869 0.96515 1.69876 1.11782 1.29538 1.42050 0.86862 0.79834 0.79789 0.83275 1.19848 1.20944 1.19051 0.88393 0.88606 0.88459 0.73844 0.80446 0.82286 0.83985 0.93115 0.90279 0.91998 0.94753 0.94441 0.92414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.68 10.32 36.01 0.37 -1.31 16 2 C 0.52 7.15 7.75 -10.99 -0.09 7.07 16 3 O -0.53 -8.66 14.27 5.55 0.08 -8.58 16 4 N -0.66 -9.87 5.02 -9.57 -0.05 -9.91 16 5 C 0.14 2.26 6.46 -83.31 -0.54 1.72 16 6 C 0.09 1.35 9.89 -17.34 -0.17 1.18 16 7 N -0.46 -6.63 10.32 -13.13 -0.14 -6.76 16 8 C 0.07 0.82 11.16 -17.61 -0.20 0.62 16 9 C -0.12 -1.55 8.27 -39.04 -0.32 -1.88 16 10 C -0.11 -1.72 4.50 -104.50 -0.47 -2.19 16 11 C 0.55 10.61 6.44 -12.34 -0.08 10.53 16 12 O -0.52 -12.14 16.13 5.32 0.09 -12.05 16 13 N -0.58 -11.20 2.86 -184.09 -0.53 -11.72 16 14 C 0.08 1.16 9.32 59.85 0.56 1.72 16 15 C 0.21 4.91 4.21 -5.19 -0.02 4.88 16 16 C -0.53 -14.31 9.94 -34.44 -0.34 -14.65 16 17 H 0.07 2.18 8.06 -52.49 -0.42 1.75 16 18 C 0.07 2.06 5.47 -17.82 -0.10 1.97 16 19 N -0.89 -26.22 13.96 55.43 0.77 -25.45 16 20 Si 0.88 20.54 27.47 -169.99 -4.67 15.87 16 21 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 22 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 23 H -0.27 -5.85 6.54 56.52 0.37 -5.48 16 24 H 0.10 0.83 8.12 -51.93 -0.42 0.41 16 25 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 27 H 0.42 6.52 7.70 -40.82 -0.31 6.21 16 28 H 0.18 2.72 5.80 -52.49 -0.30 2.42 16 29 H 0.16 1.36 8.06 -52.48 -0.42 0.93 16 30 H 0.14 1.51 7.59 -52.49 -0.40 1.11 16 31 H 0.05 0.59 7.89 -51.93 -0.41 0.18 16 32 H 0.08 1.18 8.11 -51.93 -0.42 0.76 16 33 H 0.06 0.81 6.40 -51.93 -0.33 0.48 16 34 H 0.03 0.74 7.13 -51.93 -0.37 0.37 16 35 H 0.04 0.91 6.93 -51.93 -0.36 0.55 16 36 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 310.89 15.07 4.69 4.69 Total: -1.00 -33.69 310.89 -5.34 -39.03 By element: Atomic # 1 Polarization: 9.43 SS G_CDS: -4.19 Total: 5.24 kcal Atomic # 6 Polarization: 11.05 SS G_CDS: -1.40 Total: 9.66 kcal Atomic # 7 Polarization: -53.91 SS G_CDS: 0.06 Total: -53.85 kcal Atomic # 8 Polarization: -20.80 SS G_CDS: 0.17 Total: -20.64 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -4.67 Total: 15.87 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -33.69 -5.34 -39.03 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001542367426.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.931 kcal (2) G-P(sol) polarization free energy of solvation -33.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds