Wall clock time and date at job start Mon Mar 30 2020 02:00:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46499 * 120.00228 * 2 1 4 4 C 1.34781 * 119.99728 * 179.97438 * 2 1 3 5 5 O 1.21585 * 119.99543 * 359.97438 * 4 2 1 6 6 N 1.34779 * 120.00023 * 179.97438 * 4 2 1 7 7 C 1.39932 * 119.99933 * 174.50669 * 6 4 2 8 8 C 1.39000 * 120.02673 * 326.61927 * 7 6 4 9 9 C 1.38191 * 120.09447 * 180.02562 * 8 7 6 10 10 C 1.38129 * 120.14883 * 359.96457 * 9 8 7 11 11 C 1.39074 * 120.05474 * 359.97438 * 10 9 8 12 12 N 1.39518 * 120.04436 * 180.02562 * 11 10 9 13 13 C 1.34771 * 120.00062 * 145.93320 * 12 11 10 14 14 O 1.21746 * 119.99941 * 354.98884 * 13 12 11 15 15 C 1.46163 * 120.00283 * 174.99106 * 13 12 11 16 16 H 1.07997 * 120.00037 * 359.97438 * 15 13 12 17 17 C 1.40121 * 119.99862 * 180.02562 * 15 13 12 18 18 N 1.30629 * 120.00317 * 359.97438 * 17 15 13 19 19 Si 1.86808 * 119.99711 * 180.02562 * 17 15 13 20 20 H 1.48493 * 109.47419 * 59.99521 * 19 17 15 21 21 H 1.48497 * 109.47088 * 179.97438 * 19 17 15 22 22 H 1.48506 * 109.46673 * 299.99292 * 19 17 15 23 23 C 1.38662 * 120.02386 * 146.85064 * 7 6 4 24 24 H 1.09003 * 109.46812 * 270.00358 * 1 2 3 25 25 H 1.08999 * 109.46695 * 29.99834 * 1 2 3 26 26 H 1.08993 * 109.47731 * 150.00003 * 1 2 3 27 27 H 1.09003 * 109.46507 * 270.00050 * 3 2 1 28 28 H 1.08999 * 109.47439 * 29.99962 * 3 2 1 29 29 H 1.09001 * 109.46917 * 150.00325 * 3 2 1 30 30 H 0.97000 * 119.99769 * 354.50649 * 6 4 2 31 31 H 1.07997 * 119.95686 * 0.02562 * 8 7 6 32 32 H 1.08005 * 119.92294 * 179.97438 * 9 8 7 33 33 H 1.07998 * 119.96990 * 180.02562 * 10 9 8 34 34 H 0.97005 * 119.99915 * 325.65055 * 12 11 10 35 35 H 0.97007 * 120.00386 * 180.02562 * 18 17 15 36 36 H 1.07997 * 120.08066 * 0.02562 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.1389 -1.1673 0.0005 5 8 1.5308 -2.2202 0.0015 6 7 3.4867 -1.1673 0.0000 7 6 4.1863 -2.3736 0.1165 8 6 3.6640 -3.4094 0.8823 9 6 4.3540 -4.6011 0.9988 10 6 5.5644 -4.7677 0.3545 11 6 6.0921 -3.7359 -0.4143 12 7 7.3144 -3.9046 -1.0654 13 6 7.5266 -3.3219 -2.2619 14 8 6.6226 -2.7246 -2.8171 15 6 8.8422 -3.4069 -2.8932 16 1 9.6443 -3.9363 -2.4007 17 6 9.0629 -2.8005 -4.1370 18 7 8.0929 -2.1596 -4.7326 19 14 10.7441 -2.9097 -4.9441 20 1 11.0916 -4.3351 -5.1732 21 1 10.7166 -2.1924 -6.2440 22 1 11.7603 -2.2888 -4.0569 23 6 5.4034 -2.5348 -0.5279 24 1 -0.3633 0.0001 1.0277 25 1 -0.3633 0.8900 -0.5138 26 1 -0.3634 -0.8899 -0.5138 27 1 2.3792 1.5833 -1.0277 28 1 1.6086 2.0284 0.5138 29 1 3.1500 1.1383 0.5138 30 1 3.9716 -0.3312 -0.0812 31 1 2.7176 -3.2828 1.3870 32 1 3.9458 -5.4039 1.5949 33 1 6.1010 -5.7003 0.4472 34 1 8.0130 -4.4380 -0.6550 35 1 8.2455 -1.7402 -5.5939 36 1 5.8132 -1.7299 -1.1200 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569207757.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:40 Heat of formation + Delta-G solvation = -24.474076 kcal Electronic energy + Delta-G solvation = -20931.130550 eV Core-core repulsion = 17608.910590 eV Total energy + Delta-G solvation = -3322.219961 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.51533 -38.92055 -37.02806 -35.51449 -34.64018 -33.11629 -32.35242 -29.64991 -28.73705 -27.92189 -26.20094 -25.86030 -22.44260 -21.93458 -20.39808 -19.23497 -18.39538 -17.47730 -16.95509 -16.08583 -15.73857 -15.48667 -15.27913 -14.48324 -14.31761 -14.00080 -13.96469 -13.38695 -13.05744 -12.83044 -12.72416 -12.57704 -12.38639 -12.14280 -11.92011 -11.44017 -11.26102 -11.12461 -10.96099 -10.62910 -10.37910 -10.08527 -9.88354 -9.13998 -8.84898 -8.79366 -7.85395 -7.60371 -7.01661 -6.34598 -4.82084 1.89352 2.13699 2.62310 3.08336 3.13587 3.15309 3.25644 3.89096 3.99607 4.30457 4.58032 4.70951 4.83263 5.04877 5.14826 5.42552 5.46320 5.48544 5.64967 5.68878 5.78679 5.90792 6.08377 6.12295 6.27954 6.37688 6.72685 6.81033 7.00333 7.11104 7.14417 7.28058 7.51101 7.75419 7.91572 8.07521 8.20060 8.60480 8.84936 9.24015 10.39608 10.57290 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.022106 B = 0.004290 C = 0.003721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.316737 B = 6525.882184 C = 7522.745313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.105 3.895 2 N -0.639 5.639 3 C 0.076 3.924 4 C 0.705 3.295 5 O -0.571 6.571 6 N -0.679 5.679 7 C 0.175 3.825 8 C -0.162 4.162 9 C -0.084 4.084 10 C -0.189 4.189 11 C 0.209 3.791 12 N -0.700 5.700 13 C 0.543 3.457 14 O -0.559 6.559 15 C -0.539 4.539 16 H 0.071 0.929 17 C 0.087 3.913 18 N -0.760 5.760 19 Si 0.912 3.088 20 H -0.266 1.266 21 H -0.279 1.279 22 H -0.267 1.267 23 C -0.155 4.155 24 H 0.051 0.949 25 H 0.068 0.932 26 H 0.078 0.922 27 H 0.059 0.941 28 H 0.075 0.925 29 H 0.068 0.932 30 H 0.404 0.596 31 H 0.125 0.875 32 H 0.118 0.882 33 H 0.117 0.883 34 H 0.394 0.606 35 H 0.272 0.728 36 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.749 5.372 10.537 14.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.377 5.377 3 C -0.067 4.067 4 C 0.407 3.593 5 O -0.448 6.448 6 N -0.327 5.327 7 C 0.081 3.919 8 C -0.184 4.184 9 C -0.104 4.104 10 C -0.211 4.211 11 C 0.110 3.890 12 N -0.344 5.344 13 C 0.349 3.651 14 O -0.441 6.441 15 C -0.576 4.576 16 H 0.090 0.910 17 C -0.134 4.134 18 N -0.388 5.388 19 Si 0.737 3.263 20 H -0.191 1.191 21 H -0.204 1.204 22 H -0.191 1.191 23 C -0.179 4.179 24 H 0.070 0.930 25 H 0.086 0.914 26 H 0.096 0.904 27 H 0.078 0.922 28 H 0.094 0.906 29 H 0.087 0.913 30 H 0.241 0.759 31 H 0.143 0.857 32 H 0.136 0.864 33 H 0.135 0.865 34 H 0.227 0.773 35 H 0.083 0.917 36 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -8.883 5.232 9.887 14.285 hybrid contribution 1.411 0.208 -0.387 1.478 sum -7.472 5.440 9.500 13.254 Atomic orbital electron populations 1.21500 0.77679 1.03127 1.01544 1.46912 1.07137 1.04799 1.78902 1.21781 0.97123 0.85638 1.02185 1.15817 0.81637 0.83969 0.77921 1.90928 1.67475 1.29621 1.56753 1.42660 1.04724 1.09145 1.76201 1.17295 0.92254 0.85894 0.96476 1.20835 1.01392 0.94016 1.02160 1.20613 0.94112 0.96605 0.99032 1.20877 0.97729 0.98016 1.04472 1.17597 0.88062 0.91635 0.91715 1.44126 1.12938 1.55224 1.22076 1.18376 0.89838 0.78818 0.78032 1.90649 1.45160 1.45351 1.62910 1.20827 0.95287 1.36701 1.04739 0.91030 1.25735 0.97983 0.93128 0.96562 1.69976 1.31818 1.23676 1.13367 0.86350 0.82211 0.79224 0.78548 1.19123 1.20430 1.19129 1.20904 0.96566 0.98613 1.01771 0.93028 0.91357 0.90354 0.92237 0.90613 0.91318 0.75896 0.85747 0.86435 0.86499 0.77281 0.91723 0.84348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.03 10.44 59.85 0.62 1.66 16 2 N -0.64 -7.84 3.27 -195.34 -0.64 -8.48 16 3 C 0.08 0.64 10.15 59.85 0.61 1.25 16 4 C 0.70 11.71 8.01 -86.91 -0.70 11.01 16 5 O -0.57 -11.44 13.62 5.29 0.07 -11.37 16 6 N -0.68 -11.17 5.17 -14.24 -0.07 -11.24 16 7 C 0.18 3.39 6.27 -83.72 -0.53 2.86 16 8 C -0.16 -3.00 8.65 -39.32 -0.34 -3.34 16 9 C -0.08 -1.43 10.03 -39.64 -0.40 -1.83 16 10 C -0.19 -3.43 9.97 -39.31 -0.39 -3.82 16 11 C 0.21 4.48 6.25 -83.80 -0.52 3.96 16 12 N -0.70 -15.78 5.32 -11.22 -0.06 -15.84 16 13 C 0.54 15.03 7.47 -13.08 -0.10 14.93 16 14 O -0.56 -17.46 12.75 5.15 0.07 -17.39 16 15 C -0.54 -14.65 9.53 -35.70 -0.34 -14.99 16 16 H 0.07 1.75 7.85 -52.49 -0.41 1.34 16 17 C 0.09 2.34 5.50 -17.36 -0.10 2.24 16 18 N -0.76 -21.99 11.82 55.55 0.66 -21.34 16 19 Si 0.91 19.38 29.56 -169.99 -5.02 14.35 16 20 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 21 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 22 H -0.27 -5.49 7.11 56.52 0.40 -5.08 16 23 C -0.15 -3.36 8.56 -39.17 -0.34 -3.70 16 24 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.07 0.48 8.07 -51.93 -0.42 0.06 16 26 H 0.08 0.92 7.42 -51.93 -0.39 0.53 16 27 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.08 0.45 8.07 -51.93 -0.42 0.03 16 29 H 0.07 0.54 6.45 -51.93 -0.33 0.20 16 30 H 0.40 5.51 6.63 -40.82 -0.27 5.24 16 31 H 0.12 2.28 6.42 -52.49 -0.34 1.94 16 32 H 0.12 1.63 8.06 -52.48 -0.42 1.21 16 33 H 0.12 1.83 8.06 -52.49 -0.42 1.41 16 34 H 0.39 7.53 8.80 -40.82 -0.36 7.17 16 35 H 0.27 7.15 8.29 -40.82 -0.34 6.81 16 36 H 0.14 3.33 6.48 -52.49 -0.34 2.99 16 LS Contribution 310.56 15.07 4.68 4.68 Total: -1.00 -36.04 310.56 -6.94 -42.98 By element: Atomic # 1 Polarization: 17.51 SS G_CDS: -4.10 Total: 13.41 kcal Atomic # 6 Polarization: 12.75 SS G_CDS: -2.51 Total: 10.24 kcal Atomic # 7 Polarization: -56.78 SS G_CDS: -0.12 Total: -56.89 kcal Atomic # 8 Polarization: -28.90 SS G_CDS: 0.14 Total: -28.76 kcal Atomic # 14 Polarization: 19.38 SS G_CDS: -5.02 Total: 14.35 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -36.04 -6.94 -42.98 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569207757.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.503 kcal (2) G-P(sol) polarization free energy of solvation -36.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds