Wall clock time and date at job start Mon Mar 30 2020 02:00:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46499 * 120.00228 * 2 1 4 4 C 1.34781 * 119.99728 * 179.97438 * 2 1 3 5 5 O 1.21585 * 119.99543 * 359.97438 * 4 2 1 6 6 N 1.34779 * 120.00023 * 179.97438 * 4 2 1 7 7 C 1.39932 * 119.99933 * 174.50669 * 6 4 2 8 8 C 1.39000 * 120.02673 * 326.61927 * 7 6 4 9 9 C 1.38191 * 120.09447 * 180.02562 * 8 7 6 10 10 C 1.38129 * 120.14883 * 359.96457 * 9 8 7 11 11 C 1.39074 * 120.05474 * 359.97438 * 10 9 8 12 12 N 1.39518 * 120.04436 * 180.02562 * 11 10 9 13 13 C 1.34771 * 120.00062 * 145.93320 * 12 11 10 14 14 O 1.21746 * 119.99941 * 354.98884 * 13 12 11 15 15 C 1.46163 * 120.00283 * 174.99106 * 13 12 11 16 16 H 1.07997 * 120.00037 * 359.97438 * 15 13 12 17 17 C 1.40121 * 119.99862 * 180.02562 * 15 13 12 18 18 N 1.30629 * 120.00317 * 359.97438 * 17 15 13 19 19 Si 1.86808 * 119.99711 * 180.02562 * 17 15 13 20 20 H 1.48493 * 109.47419 * 59.99521 * 19 17 15 21 21 H 1.48497 * 109.47088 * 179.97438 * 19 17 15 22 22 H 1.48506 * 109.46673 * 299.99292 * 19 17 15 23 23 C 1.38662 * 120.02386 * 146.85064 * 7 6 4 24 24 H 1.09003 * 109.46812 * 270.00358 * 1 2 3 25 25 H 1.08999 * 109.46695 * 29.99834 * 1 2 3 26 26 H 1.08993 * 109.47731 * 150.00003 * 1 2 3 27 27 H 1.09003 * 109.46507 * 270.00050 * 3 2 1 28 28 H 1.08999 * 109.47439 * 29.99962 * 3 2 1 29 29 H 1.09001 * 109.46917 * 150.00325 * 3 2 1 30 30 H 0.97000 * 119.99769 * 354.50649 * 6 4 2 31 31 H 1.07997 * 119.95686 * 0.02562 * 8 7 6 32 32 H 1.08005 * 119.92294 * 179.97438 * 9 8 7 33 33 H 1.07998 * 119.96990 * 180.02562 * 10 9 8 34 34 H 0.97005 * 119.99915 * 325.65055 * 12 11 10 35 35 H 0.97007 * 120.00386 * 180.02562 * 18 17 15 36 36 H 1.07997 * 120.08066 * 0.02562 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.1389 -1.1673 0.0005 5 8 1.5308 -2.2202 0.0015 6 7 3.4867 -1.1673 0.0000 7 6 4.1863 -2.3736 0.1165 8 6 3.6640 -3.4094 0.8823 9 6 4.3540 -4.6011 0.9988 10 6 5.5644 -4.7677 0.3545 11 6 6.0921 -3.7359 -0.4143 12 7 7.3144 -3.9046 -1.0654 13 6 7.5266 -3.3219 -2.2619 14 8 6.6226 -2.7246 -2.8171 15 6 8.8422 -3.4069 -2.8932 16 1 9.6443 -3.9363 -2.4007 17 6 9.0629 -2.8005 -4.1370 18 7 8.0929 -2.1596 -4.7326 19 14 10.7441 -2.9097 -4.9441 20 1 11.0916 -4.3351 -5.1732 21 1 10.7166 -2.1924 -6.2440 22 1 11.7603 -2.2888 -4.0569 23 6 5.4034 -2.5348 -0.5279 24 1 -0.3633 0.0001 1.0277 25 1 -0.3633 0.8900 -0.5138 26 1 -0.3634 -0.8899 -0.5138 27 1 2.3792 1.5833 -1.0277 28 1 1.6086 2.0284 0.5138 29 1 3.1500 1.1383 0.5138 30 1 3.9716 -0.3312 -0.0812 31 1 2.7176 -3.2828 1.3870 32 1 3.9458 -5.4039 1.5949 33 1 6.1010 -5.7003 0.4472 34 1 8.0130 -4.4380 -0.6550 35 1 8.2455 -1.7402 -5.5939 36 1 5.8132 -1.7299 -1.1200 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569207757.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:39 Heat of formation + Delta-G solvation = -51.018474 kcal Electronic energy + Delta-G solvation = -20932.281602 eV Core-core repulsion = 17608.910590 eV Total energy + Delta-G solvation = -3323.371012 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.83287 -40.55066 -38.77221 -36.66772 -36.15498 -34.92718 -34.34405 -31.13242 -30.31413 -28.79554 -28.16841 -26.89237 -24.10453 -23.33467 -22.05464 -20.74235 -19.79594 -19.12029 -18.47720 -17.54605 -17.30425 -16.97818 -16.69448 -16.08894 -15.80365 -15.64197 -15.09903 -14.77708 -14.58899 -14.30087 -14.18769 -13.65516 -13.48671 -13.42668 -13.20363 -12.95291 -12.81326 -12.75944 -12.68692 -12.47548 -12.07758 -11.55401 -11.33280 -10.96860 -10.63493 -9.92814 -9.81010 -9.15969 -8.69006 -8.35958 -6.94012 0.40939 0.56980 1.40527 1.43461 1.50061 1.55684 1.95339 2.21772 2.39607 2.78059 2.92736 3.04830 3.59773 4.06722 4.15925 4.30903 4.34430 4.40698 4.44964 4.63649 4.63944 4.72862 4.80156 4.84650 4.91133 5.25027 5.25925 5.42189 5.47707 5.52430 5.58954 5.78434 5.81273 6.00567 6.17857 6.42170 6.71543 6.78646 7.33630 7.36418 8.36844 8.57569 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.022106 B = 0.004290 C = 0.003721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.316737 B = 6525.882184 C = 7522.745313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.633 5.633 3 C 0.069 3.931 4 C 0.695 3.305 5 O -0.612 6.612 6 N -0.677 5.677 7 C 0.173 3.827 8 C -0.165 4.165 9 C -0.072 4.072 10 C -0.179 4.179 11 C 0.179 3.821 12 N -0.691 5.691 13 C 0.529 3.471 14 O -0.607 6.607 15 C -0.566 4.566 16 H 0.094 0.906 17 C 0.031 3.969 18 N -0.814 5.814 19 Si 1.001 2.999 20 H -0.254 1.254 21 H -0.275 1.275 22 H -0.252 1.252 23 C -0.178 4.178 24 H 0.066 0.934 25 H 0.102 0.898 26 H 0.055 0.945 27 H 0.063 0.937 28 H 0.110 0.890 29 H 0.071 0.929 30 H 0.414 0.586 31 H 0.128 0.872 32 H 0.160 0.840 33 H 0.148 0.852 34 H 0.409 0.591 35 H 0.277 0.723 36 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.260 5.066 11.645 14.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.370 5.370 3 C -0.073 4.073 4 C 0.397 3.603 5 O -0.492 6.492 6 N -0.326 5.326 7 C 0.077 3.923 8 C -0.186 4.186 9 C -0.091 4.091 10 C -0.201 4.201 11 C 0.081 3.919 12 N -0.336 5.336 13 C 0.336 3.664 14 O -0.493 6.493 15 C -0.601 4.601 16 H 0.112 0.888 17 C -0.186 4.186 18 N -0.443 5.443 19 Si 0.820 3.180 20 H -0.178 1.178 21 H -0.200 1.200 22 H -0.176 1.176 23 C -0.202 4.202 24 H 0.084 0.916 25 H 0.121 0.879 26 H 0.074 0.926 27 H 0.082 0.918 28 H 0.128 0.872 29 H 0.090 0.910 30 H 0.253 0.747 31 H 0.146 0.854 32 H 0.177 0.823 33 H 0.165 0.835 34 H 0.245 0.755 35 H 0.087 0.913 36 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -8.405 4.959 11.058 14.748 hybrid contribution 1.115 0.348 -0.628 1.327 sum -7.290 5.308 10.429 13.787 Atomic orbital electron populations 1.21712 0.76159 1.03675 1.02700 1.47096 1.08169 1.04626 1.77124 1.22062 0.97668 0.84530 1.03069 1.16084 0.81419 0.84844 0.77933 1.90882 1.68105 1.31462 1.58739 1.42624 1.05017 1.08880 1.76082 1.17375 0.91579 0.87270 0.96044 1.21055 1.01497 0.94351 1.01725 1.21076 0.93097 0.96910 0.98026 1.21152 0.98041 0.98021 1.02884 1.17920 0.88065 0.92716 0.93224 1.43676 1.14097 1.54824 1.20968 1.18748 0.89858 0.78597 0.79228 1.90609 1.46520 1.47434 1.64697 1.21389 0.95786 1.37314 1.05656 0.88780 1.26998 1.02823 0.91850 0.96898 1.70148 1.35016 1.25012 1.14135 0.85017 0.75865 0.79820 0.77313 1.17815 1.19965 1.17607 1.20712 0.98106 0.98418 1.02945 0.91552 0.87945 0.92644 0.91848 0.87179 0.91008 0.74699 0.85390 0.82265 0.83473 0.75476 0.91308 0.87875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.82 10.44 127.77 1.33 3.16 16 2 N -0.63 -14.91 3.27 -890.18 -2.91 -17.83 16 3 C 0.07 1.04 10.15 127.77 1.30 2.33 16 4 C 0.70 23.27 8.01 179.05 1.43 24.71 16 5 O -0.61 -24.85 13.62 -3.98 -0.05 -24.91 16 6 N -0.68 -22.85 5.17 -317.24 -1.64 -24.49 16 7 C 0.17 6.84 6.27 38.13 0.24 7.08 16 8 C -0.16 -5.96 8.65 22.44 0.19 -5.77 16 9 C -0.07 -2.29 10.03 22.23 0.22 -2.06 16 10 C -0.18 -6.21 9.97 22.44 0.22 -5.99 16 11 C 0.18 7.77 6.25 38.28 0.24 8.01 16 12 N -0.69 -31.75 5.32 -307.60 -1.64 -33.38 16 13 C 0.53 30.34 7.47 86.30 0.64 30.99 16 14 O -0.61 -39.99 12.75 -4.50 -0.06 -40.04 16 15 C -0.57 -31.13 9.53 24.79 0.24 -30.89 16 16 H 0.09 4.56 7.85 -2.91 -0.02 4.53 16 17 C 0.03 1.66 5.50 85.33 0.47 2.13 16 18 N -0.81 -48.67 11.82 21.85 0.26 -48.41 16 19 Si 1.00 39.53 29.56 68.60 2.03 41.56 16 20 H -0.25 -9.47 7.11 99.48 0.71 -8.76 16 21 H -0.27 -10.53 7.11 99.48 0.71 -9.82 16 22 H -0.25 -9.31 7.11 99.48 0.71 -8.60 16 23 C -0.18 -8.10 8.56 22.53 0.19 -7.90 16 24 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 25 H 0.10 1.17 8.07 -2.39 -0.02 1.15 16 26 H 0.05 1.29 7.42 -2.39 -0.02 1.27 16 27 H 0.06 0.94 8.14 -2.39 -0.02 0.93 16 28 H 0.11 0.94 8.07 -2.39 -0.02 0.93 16 29 H 0.07 1.05 6.45 -2.39 -0.02 1.03 16 30 H 0.41 11.75 6.63 -92.71 -0.61 11.14 16 31 H 0.13 4.59 6.42 -2.91 -0.02 4.57 16 32 H 0.16 3.73 8.06 -2.91 -0.02 3.70 16 33 H 0.15 4.15 8.06 -2.91 -0.02 4.13 16 34 H 0.41 15.60 8.80 -92.70 -0.82 14.78 16 35 H 0.28 15.01 8.29 -92.70 -0.77 14.24 16 36 H 0.10 5.39 6.48 -2.91 -0.02 5.37 16 Total: -1.00 -82.55 310.56 2.42 -80.14 By element: Atomic # 1 Polarization: 41.89 SS G_CDS: -0.30 Total: 41.59 kcal Atomic # 6 Polarization: 19.05 SS G_CDS: 6.73 Total: 25.78 kcal Atomic # 7 Polarization: -118.18 SS G_CDS: -5.93 Total: -124.12 kcal Atomic # 8 Polarization: -64.84 SS G_CDS: -0.11 Total: -64.95 kcal Atomic # 14 Polarization: 39.53 SS G_CDS: 2.03 Total: 41.56 kcal Total: -82.55 2.42 -80.14 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569207757.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.119 kcal (2) G-P(sol) polarization free energy of solvation -82.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds