Wall clock time and date at job start Mon Mar 30 2020 01:39:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 O 1.21274 * 119.99731 * 2 1 4 4 N 1.34770 * 119.99967 * 180.02562 * 2 1 3 5 5 C 1.39304 * 119.99978 * 184.23879 * 4 2 1 6 6 C 1.39084 * 120.59571 * 331.57575 * 5 4 2 7 7 N 1.31601 * 120.77530 * 180.28588 * 6 5 4 8 8 C 1.31919 * 122.16257 * 359.73571 * 7 6 5 9 9 C 1.37975 * 121.10562 * 0.02562 * 8 7 6 10 10 C 1.39927 * 119.08705 * 359.97438 * 9 8 7 11 11 C 1.47818 * 120.97529 * 179.97438 * 10 9 8 12 12 O 1.21553 * 120.00355 * 173.58554 * 11 10 9 13 13 N 1.34776 * 119.99835 * 353.58202 * 11 10 9 14 14 C 1.46501 * 120.00135 * 179.72606 * 13 11 10 15 15 C 1.53002 * 109.46988 * 180.28026 * 14 13 11 16 16 C 1.50709 * 109.46765 * 179.97438 * 15 14 13 17 17 H 1.07996 * 119.99818 * 359.97438 * 16 15 14 18 18 C 1.37869 * 119.99669 * 179.97438 * 16 15 14 19 19 N 1.31518 * 120.00545 * 359.97438 * 18 16 15 20 20 Si 1.86807 * 119.99904 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47193 * 90.00132 * 20 18 16 22 22 H 1.48504 * 109.46927 * 210.00276 * 20 18 16 23 23 H 1.48498 * 109.46604 * 329.99747 * 20 18 16 24 24 H 1.08995 * 109.46697 * 269.99924 * 1 2 3 25 25 H 1.09003 * 109.47138 * 29.99632 * 1 2 3 26 26 H 1.08997 * 109.47146 * 149.99926 * 1 2 3 27 27 H 0.97003 * 120.00226 * 4.24478 * 4 2 1 28 28 H 1.08002 * 119.60938 * 0.02562 * 6 5 4 29 29 H 1.08000 * 119.44884 * 180.02562 * 8 7 6 30 30 H 1.08007 * 120.45894 * 180.02562 * 9 8 7 31 31 H 0.97000 * 120.00057 * 0.02562 * 13 11 10 32 32 H 1.09003 * 109.47134 * 300.27772 * 14 13 11 33 33 H 1.08998 * 109.46935 * 60.27774 * 14 13 11 34 34 H 1.08997 * 109.46723 * 299.99463 * 15 14 13 35 35 H 1.08998 * 109.47488 * 60.00087 * 15 14 13 36 36 H 0.96997 * 120.00657 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1671 -0.0005 5 6 3.5711 -1.1688 0.0886 6 6 4.3128 -0.0962 -0.3950 7 7 5.6265 -0.0966 -0.3176 8 6 6.2981 -1.0971 0.2193 9 6 5.6460 -2.2010 0.7293 10 6 4.2488 -2.2521 0.6727 11 6 3.5078 -3.4146 1.2059 12 8 2.2935 -3.3912 1.2545 13 7 4.1786 -4.5007 1.6383 14 6 3.4445 -5.6505 2.1724 15 6 4.4357 -6.7365 2.5955 16 6 3.6806 -7.9191 3.1455 17 1 2.6017 -7.8979 3.1893 18 6 4.3671 -9.0279 3.5927 19 7 5.6809 -9.0539 3.5389 20 14 3.4311 -10.4941 4.2738 21 1 3.1206 -11.4389 3.1711 22 1 4.2622 -11.1810 5.2950 23 1 2.1664 -10.0277 4.8971 24 1 -0.3632 0.0000 1.0276 25 1 -0.3633 0.8900 -0.5138 26 1 -0.3633 -0.8900 -0.5138 27 1 1.6979 -2.0061 -0.0631 28 1 3.8048 0.7450 -0.8430 29 1 7.3763 -1.0515 0.2604 30 1 6.2062 -3.0141 1.1670 31 1 5.1477 -4.5193 1.5999 32 1 2.8578 -5.3377 3.0361 33 1 2.7790 -6.0451 1.4047 34 1 5.0224 -7.0494 1.7317 35 1 5.1013 -6.3419 3.3632 36 1 6.1639 -9.8339 3.8539 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001611545316.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:10 Heat of formation + Delta-G solvation = -64.216025 kcal Electronic energy + Delta-G solvation = -20561.075967 eV Core-core repulsion = 17237.132666 eV Total energy + Delta-G solvation = -3323.943301 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.31580 -40.66259 -39.94474 -36.90561 -36.06403 -34.94587 -33.63491 -32.12078 -31.37590 -29.76952 -27.15449 -25.61170 -24.57830 -22.92109 -22.17586 -21.64925 -19.26644 -18.77885 -18.46457 -18.40224 -17.36005 -16.68934 -16.58225 -16.49638 -16.23005 -15.87167 -15.50958 -15.17853 -14.77677 -14.64341 -14.58389 -14.29140 -13.67798 -13.28899 -13.21963 -13.20415 -12.95063 -12.53411 -12.27801 -12.15036 -11.74819 -11.55208 -11.30501 -11.11177 -10.85506 -10.60182 -10.53366 -10.12298 -9.42565 -8.23742 -6.33791 -0.49836 -0.06410 1.42595 1.42970 1.43573 1.54313 1.71525 1.97098 2.00657 2.42848 2.74104 3.11847 3.45793 3.48758 3.60497 3.62806 3.84797 4.12460 4.43380 4.44881 4.48935 4.54246 4.59395 4.69842 4.83154 4.85171 5.02507 5.09790 5.18403 5.45959 5.58267 5.60504 5.78211 6.14939 6.24306 6.42706 6.77592 6.79650 6.92647 7.04337 7.35832 8.87918 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.025966 B = 0.003518 C = 0.003117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.078841 B = 7956.289230 C = 8982.250093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.507 3.493 3 O -0.565 6.565 4 N -0.652 5.652 5 C 0.139 3.861 6 C 0.074 3.926 7 N -0.465 5.465 8 C 0.073 3.927 9 C -0.107 4.107 10 C -0.137 4.137 11 C 0.558 3.442 12 O -0.569 6.569 13 N -0.702 5.702 14 C 0.141 3.859 15 C 0.020 3.980 16 C -0.545 4.545 17 H 0.061 0.939 18 C 0.008 3.992 19 N -0.926 5.926 20 Si 0.962 3.038 21 H -0.273 1.273 22 H -0.282 1.282 23 H -0.266 1.266 24 H 0.110 0.890 25 H 0.111 0.889 26 H 0.105 0.895 27 H 0.429 0.571 28 H 0.176 0.824 29 H 0.199 0.801 30 H 0.171 0.829 31 H 0.412 0.588 32 H 0.053 0.947 33 H 0.056 0.944 34 H 0.011 0.989 35 H 0.010 0.990 36 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.127 14.939 -7.931 17.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.298 3.702 3 O -0.444 6.444 4 N -0.301 5.301 5 C 0.038 3.962 6 C -0.086 4.086 7 N -0.174 5.174 8 C -0.084 4.084 9 C -0.128 4.128 10 C -0.150 4.150 11 C 0.346 3.654 12 O -0.450 6.450 13 N -0.352 5.352 14 C 0.017 3.983 15 C -0.017 4.017 16 C -0.584 4.584 17 H 0.079 0.921 18 C -0.191 4.191 19 N -0.566 5.566 20 Si 0.787 3.213 21 H -0.198 1.198 22 H -0.208 1.208 23 H -0.190 1.190 24 H 0.129 0.871 25 H 0.130 0.870 26 H 0.124 0.876 27 H 0.272 0.728 28 H 0.193 0.807 29 H 0.216 0.784 30 H 0.189 0.811 31 H 0.249 0.751 32 H 0.071 0.929 33 H 0.075 0.925 34 H 0.029 0.971 35 H 0.028 0.972 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.073 16.231 -8.152 18.615 hybrid contribution -0.377 -2.087 0.799 2.266 sum -4.451 14.144 -7.354 16.551 Atomic orbital electron populations 1.21936 0.86613 1.06955 1.06594 1.21974 0.92935 0.81933 0.73318 1.90641 1.71289 1.32492 1.49956 1.43978 1.04088 1.12022 1.69969 1.19095 0.85315 0.95565 0.96186 1.23349 0.89329 0.97919 0.98046 1.67632 1.08572 1.27816 1.13409 1.23287 1.02337 0.88160 0.94568 1.22603 0.91893 1.00734 0.97555 1.20221 0.95415 0.95844 1.03553 1.18246 0.86930 0.82563 0.77694 1.90573 1.14419 1.82144 1.57859 1.46010 1.11471 1.15720 1.61975 1.21344 0.95049 0.84627 0.97231 1.19161 0.94329 0.92334 0.95914 1.21460 0.93783 1.01223 1.41917 0.92093 1.25832 0.95748 1.01554 0.95934 1.70045 1.07652 1.30970 1.47888 0.85487 0.78645 0.78937 0.78241 1.19842 1.20797 1.18991 0.87149 0.87031 0.87646 0.72786 0.80719 0.78392 0.81142 0.75131 0.92900 0.92521 0.97077 0.97193 0.92584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.06 10.31 71.24 0.73 -1.33 16 2 C 0.51 11.42 7.82 87.66 0.69 12.11 16 3 O -0.56 -16.31 14.18 -3.01 -0.04 -16.36 16 4 N -0.65 -15.82 4.79 -302.59 -1.45 -17.27 16 5 C 0.14 3.76 6.44 38.71 0.25 4.01 16 6 C 0.07 2.01 9.94 84.93 0.84 2.86 16 7 N -0.46 -11.81 10.32 -195.47 -2.02 -13.83 16 8 C 0.07 1.43 11.16 84.62 0.94 2.38 16 9 C -0.11 -2.17 9.59 22.62 0.22 -1.96 16 10 C -0.14 -3.57 5.92 -19.78 -0.12 -3.69 16 11 C 0.56 17.05 7.76 86.78 0.67 17.73 16 12 O -0.57 -19.56 14.07 -3.88 -0.05 -19.61 16 13 N -0.70 -21.72 5.51 -466.00 -2.57 -24.29 16 14 C 0.14 5.44 5.61 86.38 0.48 5.92 16 15 C 0.02 0.94 5.09 29.85 0.15 1.09 16 16 C -0.55 -28.91 9.11 25.60 0.23 -28.67 16 17 H 0.06 3.14 7.74 -2.91 -0.02 3.12 16 18 C 0.01 0.44 5.46 84.65 0.46 0.91 16 19 N -0.93 -52.45 13.29 21.44 0.28 -52.17 16 20 Si 0.96 42.02 29.54 68.60 2.03 44.05 16 21 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 22 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 23 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 24 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 25 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 26 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 27 H 0.43 10.07 6.38 -92.71 -0.59 9.48 16 28 H 0.18 4.95 5.74 -2.91 -0.02 4.93 16 29 H 0.20 2.37 8.06 -2.91 -0.02 2.35 16 30 H 0.17 2.51 6.58 -2.91 -0.02 2.49 16 31 H 0.41 10.70 6.65 -92.71 -0.62 10.09 16 32 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 33 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 34 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 35 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 36 H 0.27 14.19 8.31 -92.71 -0.77 13.42 16 Total: -1.00 -68.13 313.68 1.66 -66.46 By element: Atomic # 1 Polarization: 21.73 SS G_CDS: -0.08 Total: 21.65 kcal Atomic # 6 Polarization: 5.79 SS G_CDS: 5.56 Total: 11.35 kcal Atomic # 7 Polarization: -101.80 SS G_CDS: -5.75 Total: -107.55 kcal Atomic # 8 Polarization: -35.87 SS G_CDS: -0.10 Total: -35.97 kcal Atomic # 14 Polarization: 42.02 SS G_CDS: 2.03 Total: 44.05 kcal Total: -68.13 1.66 -66.46 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001611545316.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.246 kcal (2) G-P(sol) polarization free energy of solvation -68.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds