Wall clock time and date at job start Mon Mar 30 2020 02:09:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34784 * 119.99875 * 2 1 4 4 O 1.21586 * 120.00147 * 359.97438 * 3 2 1 5 5 N 1.34779 * 119.99938 * 179.97438 * 3 2 1 6 6 C 1.46496 * 119.99592 * 179.97438 * 5 3 2 7 7 C 1.50703 * 109.46657 * 179.97438 * 6 5 3 8 8 O 1.21284 * 120.00390 * 359.97438 * 7 6 5 9 9 N 1.34784 * 119.99995 * 179.97438 * 7 6 5 10 10 C 1.39936 * 119.99997 * 174.89126 * 9 7 6 11 11 C 1.39284 * 119.94576 * 145.78673 * 10 9 7 12 12 C 1.38490 * 120.42766 * 180.02562 * 11 10 9 13 13 C 1.37685 * 120.32353 * 359.97191 * 12 11 10 14 14 C 1.40738 * 119.88263 * 0.02900 * 13 12 11 15 15 C 1.41413 * 120.21030 * 179.97438 * 14 13 12 16 16 H 1.07992 * 120.00046 * 205.16722 * 15 14 13 17 17 C 1.39933 * 119.99574 * 25.16881 * 15 14 13 18 18 N 1.30829 * 120.00525 * 16.80676 * 17 15 14 19 19 Si 1.86805 * 119.99523 * 196.80273 * 17 15 14 20 20 H 1.48494 * 109.47161 * 0.02562 * 19 17 15 21 21 H 1.48506 * 109.46566 * 120.00376 * 19 17 15 22 22 H 1.48503 * 109.47010 * 239.99895 * 19 17 15 23 23 C 1.38247 * 119.94576 * 325.51498 * 10 9 7 24 24 H 1.08995 * 109.46787 * 300.00356 * 1 2 3 25 25 H 1.08992 * 109.46831 * 60.00268 * 1 2 3 26 26 H 1.09003 * 109.46705 * 180.02562 * 1 2 3 27 27 H 0.97003 * 120.00304 * 179.97438 * 2 1 3 28 28 H 0.97002 * 119.99664 * 359.97438 * 5 3 2 29 29 H 1.09000 * 109.47011 * 299.99191 * 6 5 3 30 30 H 1.08995 * 109.47557 * 60.00045 * 6 5 3 31 31 H 0.96995 * 119.99900 * 354.90041 * 9 7 6 32 32 H 1.07996 * 119.78903 * 359.97438 * 11 10 9 33 33 H 1.08002 * 119.83851 * 180.02562 * 12 11 10 34 34 H 1.08000 * 120.05889 * 180.02562 * 13 12 11 35 35 H 0.96993 * 120.00217 * 179.97438 * 18 17 15 36 36 H 1.07994 * 120.16062 * 359.97438 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 1.5310 2.2202 -0.0005 5 7 3.4867 1.1673 0.0005 6 6 4.2191 2.4360 0.0000 7 6 5.7007 2.1607 0.0013 8 8 6.1051 1.0172 0.0032 9 7 6.5766 3.1851 0.0006 10 6 7.9487 2.9327 0.1098 11 6 8.8607 3.7470 -0.5574 12 6 10.2207 3.5059 -0.4567 13 6 10.6864 2.4580 0.3053 14 6 9.7767 1.6267 0.9850 15 6 10.2474 0.5481 1.7691 16 1 9.6111 -0.3053 1.9510 17 6 11.5376 0.5867 2.3094 18 7 12.1842 1.7219 2.3788 19 14 12.3369 -0.9829 2.9316 20 1 11.4041 -2.1226 2.7410 21 1 13.5881 -1.2356 2.1727 22 1 12.6540 -0.8383 4.3751 23 6 8.3970 1.8789 0.8842 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.9501 -0.8400 0.0004 28 1 3.9717 0.3272 0.0013 29 1 3.9562 3.0069 -0.8906 30 1 3.9554 3.0082 0.8894 31 1 6.2558 4.0973 -0.0755 32 1 8.5050 4.5712 -1.1578 33 1 10.9195 4.1436 -0.9778 34 1 11.7480 2.2741 0.3811 35 1 13.0783 1.7487 2.7536 36 1 7.6908 1.2499 1.4058 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001635704136.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:24 Heat of formation + Delta-G solvation = -42.522432 kcal Electronic energy + Delta-G solvation = -20358.232415 eV Core-core repulsion = 17035.229819 eV Total energy + Delta-G solvation = -3323.002596 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.33945 -39.48259 -37.29400 -34.88248 -34.63151 -34.27493 -33.10742 -29.86659 -29.36485 -27.59708 -25.71905 -25.29620 -21.78969 -21.00120 -20.85495 -19.82949 -18.86773 -17.86725 -16.71446 -16.23120 -16.04170 -15.58509 -15.17752 -14.91410 -14.61835 -14.46301 -14.30833 -13.56398 -13.26120 -13.06349 -12.86397 -12.49415 -12.45486 -12.11368 -11.69921 -11.24737 -11.15008 -10.97490 -10.48458 -10.43367 -10.25308 -9.73275 -9.53272 -9.49063 -9.13149 -9.06995 -9.00953 -7.49433 -6.98658 -6.75039 -4.37391 2.42098 2.50775 2.78499 3.06789 3.07916 3.13909 3.15454 3.27799 3.53328 3.94089 4.18138 4.61131 4.83282 4.97172 5.28034 5.30127 5.33788 5.55749 5.67595 6.19942 6.23523 6.25331 6.34989 6.63773 6.75612 6.95570 6.99087 7.02402 7.21447 7.48114 7.66457 7.85452 7.92125 8.04047 8.09572 8.18141 8.44842 8.51535 8.65247 8.89903 8.94212 10.18487 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.023154 B = 0.003590 C = 0.003161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.005242 B = 7798.434391 C = 8856.001315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.108 3.892 2 N -0.751 5.751 3 C 0.706 3.294 4 O -0.595 6.595 5 N -0.732 5.732 6 C 0.122 3.878 7 C 0.500 3.500 8 O -0.517 6.517 9 N -0.661 5.661 10 C 0.149 3.851 11 C -0.259 4.259 12 C -0.092 4.092 13 C -0.171 4.171 14 C 0.119 3.881 15 C -0.458 4.458 16 H 0.079 0.921 17 C 0.075 3.925 18 N -0.794 5.794 19 Si 0.908 3.092 20 H -0.260 1.260 21 H -0.272 1.272 22 H -0.275 1.275 23 C -0.209 4.209 24 H 0.057 0.943 25 H 0.057 0.943 26 H 0.075 0.925 27 H 0.400 0.600 28 H 0.409 0.591 29 H 0.096 0.904 30 H 0.098 0.902 31 H 0.402 0.598 32 H 0.090 0.910 33 H 0.092 0.908 34 H 0.120 0.880 35 H 0.280 0.720 36 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.847 -1.435 -3.339 14.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.036 4.036 2 N -0.407 5.407 3 C 0.406 3.594 4 O -0.474 6.474 5 N -0.391 5.391 6 C -0.007 4.007 7 C 0.285 3.715 8 O -0.392 6.392 9 N -0.305 5.305 10 C 0.057 3.943 11 C -0.281 4.281 12 C -0.111 4.111 13 C -0.190 4.190 14 C 0.116 3.884 15 C -0.488 4.488 16 H 0.097 0.903 17 C -0.142 4.142 18 N -0.420 5.420 19 Si 0.732 3.268 20 H -0.184 1.184 21 H -0.197 1.197 22 H -0.200 1.200 23 C -0.231 4.231 24 H 0.076 0.924 25 H 0.076 0.924 26 H 0.093 0.907 27 H 0.233 0.767 28 H 0.247 0.753 29 H 0.114 0.886 30 H 0.116 0.884 31 H 0.236 0.764 32 H 0.108 0.892 33 H 0.110 0.890 34 H 0.137 0.863 35 H 0.091 0.909 36 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -13.946 -1.191 -3.228 14.364 hybrid contribution 0.737 -0.846 0.294 1.159 sum -13.209 -2.036 -2.934 13.684 Atomic orbital electron populations 1.21385 0.78082 1.01939 1.02241 1.44880 1.07752 1.07238 1.80803 1.15829 0.81411 0.84362 0.77836 1.90922 1.68009 1.30266 1.58182 1.44738 1.04586 1.09893 1.79878 1.20871 0.88491 0.86671 1.04659 1.20459 0.87998 0.85873 0.77128 1.90742 1.79355 1.21048 1.48091 1.43320 1.06002 1.09115 1.72059 1.17417 0.79812 0.98605 0.98417 1.20049 0.93154 1.05119 1.09750 1.20477 0.93692 0.97842 0.99118 1.21369 1.00174 0.97777 0.99708 1.17493 0.90031 0.91485 0.89375 1.19610 0.98201 1.03649 1.27297 0.90320 1.25908 0.96973 0.97182 0.94136 1.69827 1.12445 1.25879 1.33844 0.86264 0.79516 0.82333 0.78639 1.18365 1.19699 1.20009 1.20952 0.95930 1.01036 1.05149 0.92384 0.92398 0.90671 0.76675 0.75305 0.88618 0.88443 0.76372 0.89158 0.88955 0.86267 0.90944 0.87670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.82 10.70 59.85 0.64 1.46 16 2 N -0.75 -7.06 5.72 -72.07 -0.41 -7.47 16 3 C 0.71 9.26 8.57 -86.91 -0.74 8.51 16 4 O -0.60 -9.81 16.34 5.29 0.09 -9.72 16 5 N -0.73 -9.24 5.53 -66.42 -0.37 -9.60 16 6 C 0.12 1.54 6.16 -5.19 -0.03 1.51 16 7 C 0.50 8.20 7.63 -10.98 -0.08 8.12 16 8 O -0.52 -10.46 13.42 5.55 0.07 -10.38 16 9 N -0.66 -11.09 5.34 -9.91 -0.05 -11.15 16 10 C 0.15 3.26 6.25 -83.77 -0.52 2.74 16 11 C -0.26 -5.57 9.97 -39.10 -0.39 -5.96 16 12 C -0.09 -2.12 10.02 -39.69 -0.40 -2.52 16 13 C -0.17 -4.41 8.69 -38.84 -0.34 -4.75 16 14 C 0.12 3.22 5.57 -106.85 -0.59 2.62 16 15 C -0.46 -12.36 9.05 -37.74 -0.34 -12.71 16 16 H 0.08 2.09 7.90 -52.49 -0.41 1.68 16 17 C 0.08 1.90 5.16 -17.34 -0.09 1.81 16 18 N -0.79 -20.44 10.94 55.55 0.61 -19.84 16 19 Si 0.91 18.79 29.59 -169.99 -5.03 13.76 16 20 H -0.26 -5.37 7.11 56.52 0.40 -4.97 16 21 H -0.27 -5.51 7.11 56.52 0.40 -5.10 16 22 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 23 C -0.21 -5.27 8.39 -38.68 -0.32 -5.60 16 24 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 27 H 0.40 2.74 8.84 -40.82 -0.36 2.38 16 28 H 0.41 5.01 7.45 -40.82 -0.30 4.71 16 29 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.10 1.15 8.14 -51.93 -0.42 0.72 16 31 H 0.40 5.12 8.82 -40.82 -0.36 4.76 16 32 H 0.09 1.66 8.06 -52.49 -0.42 1.24 16 33 H 0.09 1.87 8.06 -52.49 -0.42 1.44 16 34 H 0.12 3.17 6.16 -52.49 -0.32 2.85 16 35 H 0.28 6.51 8.30 -40.82 -0.34 6.17 16 36 H 0.11 2.70 6.48 -52.49 -0.34 2.36 16 LS Contribution 315.13 15.07 4.75 4.75 Total: -1.00 -32.90 315.13 -7.76 -40.66 By element: Atomic # 1 Polarization: 17.95 SS G_CDS: -4.20 Total: 13.75 kcal Atomic # 6 Polarization: -1.54 SS G_CDS: -3.22 Total: -4.76 kcal Atomic # 7 Polarization: -47.83 SS G_CDS: -0.22 Total: -48.06 kcal Atomic # 8 Polarization: -20.26 SS G_CDS: 0.16 Total: -20.10 kcal Atomic # 14 Polarization: 18.79 SS G_CDS: -5.03 Total: 13.76 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -32.90 -7.76 -40.66 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001635704136.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.859 kcal (2) G-P(sol) polarization free energy of solvation -32.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds