Wall clock time and date at job start Mon Mar 30 2020 02:09:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34784 * 119.99875 * 2 1 4 4 O 1.21586 * 120.00147 * 359.97438 * 3 2 1 5 5 N 1.34779 * 119.99938 * 179.97438 * 3 2 1 6 6 C 1.46496 * 119.99592 * 179.97438 * 5 3 2 7 7 C 1.50703 * 109.46657 * 179.97438 * 6 5 3 8 8 O 1.21284 * 120.00390 * 359.97438 * 7 6 5 9 9 N 1.34784 * 119.99995 * 179.97438 * 7 6 5 10 10 C 1.39936 * 119.99997 * 174.89126 * 9 7 6 11 11 C 1.39284 * 119.94576 * 145.78673 * 10 9 7 12 12 C 1.38490 * 120.42766 * 180.02562 * 11 10 9 13 13 C 1.37685 * 120.32353 * 359.97191 * 12 11 10 14 14 C 1.40738 * 119.88263 * 0.02900 * 13 12 11 15 15 C 1.41413 * 120.21030 * 179.97438 * 14 13 12 16 16 H 1.07992 * 120.00046 * 205.16722 * 15 14 13 17 17 C 1.39933 * 119.99574 * 25.16881 * 15 14 13 18 18 N 1.30829 * 120.00525 * 16.80676 * 17 15 14 19 19 Si 1.86805 * 119.99523 * 196.80273 * 17 15 14 20 20 H 1.48494 * 109.47161 * 0.02562 * 19 17 15 21 21 H 1.48506 * 109.46566 * 120.00376 * 19 17 15 22 22 H 1.48503 * 109.47010 * 239.99895 * 19 17 15 23 23 C 1.38247 * 119.94576 * 325.51498 * 10 9 7 24 24 H 1.08995 * 109.46787 * 300.00356 * 1 2 3 25 25 H 1.08992 * 109.46831 * 60.00268 * 1 2 3 26 26 H 1.09003 * 109.46705 * 180.02562 * 1 2 3 27 27 H 0.97003 * 120.00304 * 179.97438 * 2 1 3 28 28 H 0.97002 * 119.99664 * 359.97438 * 5 3 2 29 29 H 1.09000 * 109.47011 * 299.99191 * 6 5 3 30 30 H 1.08995 * 109.47557 * 60.00045 * 6 5 3 31 31 H 0.96995 * 119.99900 * 354.90041 * 9 7 6 32 32 H 1.07996 * 119.78903 * 359.97438 * 11 10 9 33 33 H 1.08002 * 119.83851 * 180.02562 * 12 11 10 34 34 H 1.08000 * 120.05889 * 180.02562 * 13 12 11 35 35 H 0.96993 * 120.00217 * 179.97438 * 18 17 15 36 36 H 1.07994 * 120.16062 * 359.97438 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 1.5310 2.2202 -0.0005 5 7 3.4867 1.1673 0.0005 6 6 4.2191 2.4360 0.0000 7 6 5.7007 2.1607 0.0013 8 8 6.1051 1.0172 0.0032 9 7 6.5766 3.1851 0.0006 10 6 7.9487 2.9327 0.1098 11 6 8.8607 3.7470 -0.5574 12 6 10.2207 3.5059 -0.4567 13 6 10.6864 2.4580 0.3053 14 6 9.7767 1.6267 0.9850 15 6 10.2474 0.5481 1.7691 16 1 9.6111 -0.3053 1.9510 17 6 11.5376 0.5867 2.3094 18 7 12.1842 1.7219 2.3788 19 14 12.3369 -0.9829 2.9316 20 1 11.4041 -2.1226 2.7410 21 1 13.5881 -1.2356 2.1727 22 1 12.6540 -0.8383 4.3751 23 6 8.3970 1.8789 0.8842 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.9501 -0.8400 0.0004 28 1 3.9717 0.3272 0.0013 29 1 3.9562 3.0069 -0.8906 30 1 3.9554 3.0082 0.8894 31 1 6.2558 4.0973 -0.0755 32 1 8.5050 4.5712 -1.1578 33 1 10.9195 4.1436 -0.9778 34 1 11.7480 2.2741 0.3811 35 1 13.0783 1.7487 2.7536 36 1 7.6908 1.2499 1.4058 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001635704136.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:23 Heat of formation + Delta-G solvation = -67.759403 kcal Electronic energy + Delta-G solvation = -20359.326772 eV Core-core repulsion = 17035.229819 eV Total energy + Delta-G solvation = -3324.096953 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.58048 -40.72498 -39.02135 -36.32389 -35.67933 -35.44404 -34.86576 -31.75669 -30.78871 -28.86916 -27.26906 -26.58605 -23.37360 -22.72603 -21.93873 -21.32985 -19.93029 -19.56748 -18.00177 -17.49579 -17.33590 -17.06337 -16.69011 -16.45777 -16.11149 -15.65883 -15.28929 -15.05472 -14.71678 -14.37090 -14.29777 -13.93111 -13.55548 -13.44965 -13.01269 -12.99662 -12.90446 -12.79264 -12.18156 -12.00462 -11.53914 -11.52514 -11.20253 -10.93092 -10.74207 -10.48988 -9.87015 -9.39872 -8.77435 -8.61374 -6.36983 0.81472 0.99071 1.37062 1.45938 1.50887 1.52501 1.69891 2.07269 2.20778 2.27775 2.73340 3.31323 3.58848 3.75422 4.31056 4.32644 4.47025 4.48282 4.63646 4.68958 4.97099 5.01565 5.09317 5.11508 5.17249 5.27744 5.32983 5.47809 5.72736 5.84695 5.89931 6.08129 6.10553 6.33150 6.54345 6.68117 6.93496 6.97409 7.00379 7.20423 7.48423 8.33210 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.023154 B = 0.003590 C = 0.003161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.005242 B = 7798.434391 C = 8856.001315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.104 3.896 2 N -0.740 5.740 3 C 0.702 3.298 4 O -0.631 6.631 5 N -0.733 5.733 6 C 0.133 3.867 7 C 0.503 3.497 8 O -0.557 6.557 9 N -0.651 5.651 10 C 0.157 3.843 11 C -0.249 4.249 12 C -0.092 4.092 13 C -0.198 4.198 14 C 0.089 3.911 15 C -0.501 4.501 16 H 0.065 0.935 17 C 0.037 3.963 18 N -0.823 5.823 19 Si 0.981 3.019 20 H -0.264 1.264 21 H -0.260 1.260 22 H -0.263 1.263 23 C -0.234 4.234 24 H 0.049 0.951 25 H 0.051 0.949 26 H 0.112 0.888 27 H 0.413 0.587 28 H 0.411 0.589 29 H 0.118 0.882 30 H 0.112 0.888 31 H 0.425 0.575 32 H 0.133 0.867 33 H 0.122 0.878 34 H 0.103 0.897 35 H 0.289 0.711 36 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.830 -1.019 -4.001 15.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.396 5.396 3 C 0.401 3.599 4 O -0.513 6.513 5 N -0.392 5.392 6 C 0.005 3.995 7 C 0.290 3.710 8 O -0.435 6.435 9 N -0.297 5.297 10 C 0.064 3.936 11 C -0.270 4.270 12 C -0.111 4.111 13 C -0.218 4.218 14 C 0.086 3.914 15 C -0.531 4.531 16 H 0.083 0.917 17 C -0.178 4.178 18 N -0.449 5.449 19 Si 0.802 3.198 20 H -0.187 1.187 21 H -0.185 1.185 22 H -0.188 1.188 23 C -0.256 4.256 24 H 0.068 0.932 25 H 0.069 0.931 26 H 0.130 0.870 27 H 0.249 0.751 28 H 0.249 0.751 29 H 0.136 0.864 30 H 0.130 0.870 31 H 0.264 0.736 32 H 0.151 0.849 33 H 0.140 0.860 34 H 0.121 0.879 35 H 0.100 0.900 36 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -14.965 -0.762 -3.900 15.484 hybrid contribution 0.914 -0.896 0.427 1.350 sum -14.051 -1.659 -3.473 14.569 Atomic orbital electron populations 1.21574 0.76790 1.04170 1.01481 1.44900 1.08576 1.06773 1.79339 1.16006 0.81304 0.84842 0.77715 1.90895 1.68597 1.31756 1.60004 1.44746 1.04620 1.09948 1.79856 1.20849 0.85194 0.87079 1.06357 1.21102 0.89411 0.84983 0.75465 1.90739 1.80317 1.22820 1.49578 1.43193 1.04055 1.10698 1.71779 1.17470 0.82404 0.97058 0.96640 1.20492 0.92403 1.05419 1.08683 1.20845 0.95233 0.96962 0.98065 1.21331 0.99337 0.99520 1.01634 1.17830 0.91218 0.92245 0.90129 1.19772 0.99776 1.04013 1.29523 0.91686 1.26699 0.96751 1.00498 0.93809 1.69859 1.13064 1.27629 1.34312 0.85184 0.78416 0.77680 0.78554 1.18747 1.18489 1.18768 1.20935 0.95158 1.02591 1.06875 0.93231 0.93071 0.86992 0.75120 0.75126 0.86417 0.86977 0.73643 0.84920 0.86001 0.87876 0.90038 0.89376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.37 10.70 127.77 1.37 2.74 16 2 N -0.74 -12.65 5.72 -500.18 -2.86 -15.51 16 3 C 0.70 17.41 8.57 179.05 1.53 18.94 16 4 O -0.63 -19.99 16.34 -3.99 -0.07 -20.06 16 5 N -0.73 -17.49 5.53 -482.30 -2.67 -20.16 16 6 C 0.13 3.10 6.16 85.63 0.53 3.62 16 7 C 0.50 15.89 7.63 87.66 0.67 16.55 16 8 O -0.56 -22.65 13.42 -3.04 -0.04 -22.69 16 9 N -0.65 -20.55 5.34 -303.64 -1.62 -22.17 16 10 C 0.16 6.74 6.25 38.10 0.24 6.98 16 11 C -0.25 -10.08 9.97 22.58 0.23 -9.85 16 12 C -0.09 -4.13 10.02 22.20 0.22 -3.90 16 13 C -0.20 -10.51 8.69 22.75 0.20 -10.31 16 14 C 0.09 4.98 5.57 -21.31 -0.12 4.86 16 15 C -0.50 -28.47 9.05 23.46 0.21 -28.26 16 16 H 0.06 3.69 7.90 -2.91 -0.02 3.67 16 17 C 0.04 1.93 5.16 85.25 0.44 2.37 16 18 N -0.82 -43.44 10.94 21.82 0.24 -43.20 16 19 Si 0.98 39.35 29.59 68.60 2.03 41.38 16 20 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 21 H -0.26 -9.89 7.11 99.48 0.71 -9.18 16 22 H -0.26 -9.98 7.11 99.48 0.71 -9.27 16 23 C -0.23 -12.14 8.39 22.85 0.19 -11.94 16 24 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 25 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 26 H 0.11 0.64 8.14 -2.39 -0.02 0.62 16 27 H 0.41 4.89 8.84 -92.71 -0.82 4.07 16 28 H 0.41 9.73 7.45 -92.71 -0.69 9.04 16 29 H 0.12 2.30 8.14 -2.39 -0.02 2.28 16 30 H 0.11 2.36 8.14 -2.39 -0.02 2.34 16 31 H 0.42 9.42 8.82 -92.71 -0.82 8.61 16 32 H 0.13 4.25 8.06 -2.91 -0.02 4.22 16 33 H 0.12 4.64 8.06 -2.91 -0.02 4.61 16 34 H 0.10 5.69 6.16 -2.91 -0.02 5.67 16 35 H 0.29 13.65 8.30 -92.71 -0.77 12.88 16 36 H 0.09 4.76 6.48 -2.91 -0.02 4.74 16 Total: -1.00 -74.23 315.13 -0.46 -74.69 By element: Atomic # 1 Polarization: 37.09 SS G_CDS: -1.18 Total: 35.91 kcal Atomic # 6 Polarization: -13.90 SS G_CDS: 5.71 Total: -8.20 kcal Atomic # 7 Polarization: -94.13 SS G_CDS: -6.91 Total: -101.04 kcal Atomic # 8 Polarization: -42.64 SS G_CDS: -0.11 Total: -42.75 kcal Atomic # 14 Polarization: 39.35 SS G_CDS: 2.03 Total: 41.38 kcal Total: -74.23 -0.46 -74.69 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001635704136.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.933 kcal (2) G-P(sol) polarization free energy of solvation -74.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds