Wall clock time and date at job start Mon Mar 30 2020 01:28:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46503 * 109.47420 * 2 1 4 4 C 1.34940 * 126.03757 * 124.99460 * 3 2 1 5 5 C 1.35317 * 107.74438 * 179.77616 * 4 3 2 6 6 C 1.39872 * 107.92021 * 0.23195 * 5 4 3 7 7 C 1.50701 * 125.89724 * 179.97438 * 6 5 4 8 8 N 1.46898 * 109.47287 * 95.00139 * 7 6 5 9 9 C 1.46896 * 111.00255 * 180.02562 * 8 7 6 10 10 H 1.09002 * 109.47011 * 324.99752 * 9 8 7 11 11 C 1.50704 * 109.47221 * 205.00108 * 9 8 7 12 12 H 1.08001 * 119.99676 * 359.97438 * 11 9 8 13 13 C 1.37877 * 120.00027 * 179.97438 * 11 9 8 14 14 N 1.31508 * 120.00266 * 359.97438 * 13 11 9 15 15 Si 1.86804 * 119.99730 * 179.97438 * 13 11 9 16 16 H 1.48497 * 109.47092 * 60.00270 * 15 13 11 17 17 H 1.48505 * 109.46842 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.47146 * 299.99814 * 15 13 11 19 19 C 1.53001 * 109.47375 * 84.99700 * 9 8 7 20 20 F 1.39900 * 109.46975 * 59.99986 * 19 9 8 21 21 F 1.39899 * 109.47296 * 179.97438 * 19 9 8 22 22 F 1.39893 * 109.47308 * 300.00219 * 19 9 8 23 23 N 1.30838 * 108.20312 * 359.97438 * 6 5 4 24 24 H 1.09001 * 109.47104 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47042 * 299.99805 * 1 2 3 26 26 H 1.09000 * 109.47085 * 59.99765 * 1 2 3 27 27 H 1.09005 * 109.47317 * 240.00222 * 2 1 3 28 28 H 1.08999 * 109.47532 * 120.00525 * 2 1 3 29 29 H 1.08002 * 126.13053 * 0.04913 * 4 3 2 30 30 H 1.08004 * 126.04102 * 180.24995 * 5 4 3 31 31 H 1.08998 * 109.46884 * 215.00109 * 7 6 5 32 32 H 1.09002 * 109.47503 * 335.00288 * 7 6 5 33 33 H 1.00905 * 110.99781 * 303.95244 * 8 7 6 34 34 H 0.96995 * 120.00443 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.8731 1.9211 0.8939 5 6 3.0756 3.2122 0.5431 6 6 2.3146 3.4716 -0.6015 7 6 2.2403 4.7866 -1.3338 8 7 3.2020 4.7838 -2.4443 9 6 3.1579 6.0531 -3.1822 10 1 2.1339 6.4262 -3.2026 11 6 3.6398 5.8312 -4.5927 12 1 3.9484 4.8458 -4.9092 13 6 3.6868 6.8862 -5.4792 14 7 3.3106 8.0860 -5.0940 15 14 4.2849 6.6112 -7.2274 16 1 3.4101 5.6169 -7.8992 17 1 4.2402 7.8945 -7.9734 18 1 5.6803 6.1040 -7.1992 19 6 4.0600 7.0770 -2.4901 20 9 5.3742 6.5982 -2.4639 21 9 4.0184 8.2858 -3.1932 22 9 3.6126 7.2830 -1.1808 23 7 1.6785 2.3755 -0.9265 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 3.3193 1.4125 1.7357 30 1 3.7126 3.9176 1.0560 31 1 1.2331 4.9277 -1.7258 32 1 2.4803 5.5988 -0.6476 33 1 4.1355 4.5903 -2.1137 34 1 3.3440 8.8283 -5.7175 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001658562874.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:04 Heat of formation + Delta-G solvation = -56.968568 kcal Electronic energy + Delta-G solvation = -22020.846881 eV Core-core repulsion = 18155.361113 eV Total energy + Delta-G solvation = -3865.485768 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.110 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -48.47483 -46.15022 -45.62605 -40.94651 -35.96603 -34.33608 -32.63160 -30.50928 -29.40241 -27.96308 -24.95403 -24.26667 -22.77257 -20.96021 -20.86818 -19.40094 -17.31144 -16.87935 -16.73370 -16.70029 -15.94473 -15.31779 -14.70846 -14.40067 -14.15827 -13.63939 -13.52389 -13.21949 -13.03993 -12.68307 -12.55935 -12.47340 -12.27356 -12.22919 -12.06602 -11.96970 -11.84204 -11.48228 -11.33267 -10.92947 -10.70809 -10.51797 -10.22255 -10.02323 -9.53492 -9.04109 -8.50657 -8.37531 -7.57786 -6.07020 -4.23419 2.09114 2.63759 3.02984 3.32038 3.35362 3.39262 4.33714 4.42706 4.46522 4.81252 4.86755 4.97812 5.04546 5.06796 5.23504 5.39628 5.57300 5.66427 5.79441 5.82094 5.91180 5.98073 6.05597 6.15590 6.26922 6.37452 6.82421 6.90424 7.18929 7.60952 7.83794 8.00317 8.12775 8.18535 8.82821 9.41177 10.85634 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.023544 B = 0.004891 C = 0.004327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.996159 B = 5723.154077 C = 6468.926418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.133 3.867 3 N -0.380 5.380 4 C 0.044 3.956 5 C -0.267 4.267 6 C 0.088 3.912 7 C 0.124 3.876 8 N -0.662 5.662 9 C 0.193 3.807 10 H 0.074 0.926 11 C -0.513 4.513 12 H 0.078 0.922 13 C 0.056 3.944 14 N -0.853 5.853 15 Si 0.912 3.088 16 H -0.274 1.274 17 H -0.286 1.286 18 H -0.275 1.275 19 C 0.394 3.606 20 F -0.208 7.208 21 F -0.136 7.136 22 F -0.232 7.232 23 N -0.272 5.272 24 H 0.071 0.929 25 H 0.058 0.942 26 H 0.072 0.928 27 H 0.082 0.918 28 H 0.091 0.909 29 H 0.168 0.832 30 H 0.144 0.856 31 H 0.083 0.917 32 H 0.058 0.942 33 H 0.337 0.663 34 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.230 -10.994 11.296 15.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.012 3.988 3 N -0.163 5.163 4 C -0.102 4.102 5 C -0.296 4.296 6 C -0.080 4.080 7 C -0.007 4.007 8 N -0.292 5.292 9 C 0.081 3.919 10 H 0.091 0.909 11 C -0.551 4.551 12 H 0.096 0.904 13 C -0.150 4.150 14 N -0.489 5.489 15 Si 0.739 3.261 16 H -0.199 1.199 17 H -0.212 1.212 18 H -0.200 1.200 19 C 0.337 3.663 20 F -0.190 7.190 21 F -0.117 7.117 22 F -0.214 7.214 23 N -0.094 5.094 24 H 0.090 0.910 25 H 0.077 0.923 26 H 0.092 0.908 27 H 0.100 0.900 28 H 0.109 0.891 29 H 0.185 0.815 30 H 0.162 0.838 31 H 0.102 0.898 32 H 0.076 0.924 33 H 0.155 0.845 34 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -3.540 -11.810 9.996 15.872 hybrid contribution 1.645 1.051 0.628 2.051 sum -1.894 -10.759 10.624 15.238 Atomic orbital electron populations 1.22050 0.94003 1.02518 1.03716 1.21594 0.95958 0.77955 1.03341 1.48764 1.36001 1.10046 1.21521 1.22424 0.96310 0.94964 0.96465 1.21455 1.09479 0.96715 1.01995 1.22340 0.95710 0.95040 0.94875 1.20529 0.98858 0.89217 0.92114 1.60615 1.09929 1.34270 1.24395 1.20462 0.95852 0.82017 0.93520 0.90874 1.20782 1.45434 0.96428 0.92413 0.90408 1.25140 0.95263 0.94834 0.99758 1.70356 1.44320 0.99909 1.34270 0.86326 0.79404 0.77391 0.82988 1.19882 1.21205 1.20040 1.24306 0.80815 0.86293 0.74897 1.92988 1.40922 1.88666 1.96405 1.93420 1.95929 1.46821 1.75569 1.92973 1.89363 1.95959 1.43097 1.77389 1.23644 0.96436 1.11971 0.91015 0.92261 0.90850 0.89961 0.89113 0.81454 0.83818 0.89823 0.92404 0.84454 0.92540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.44 10.10 37.16 0.38 -1.07 16 2 C 0.13 1.23 7.23 -4.04 -0.03 1.20 16 3 N -0.38 -5.19 3.68 -61.36 -0.23 -5.42 16 4 C 0.04 0.54 11.45 -17.23 -0.20 0.35 16 5 C -0.27 -3.97 10.74 -40.01 -0.43 -4.40 16 6 C 0.09 1.55 6.73 -82.40 -0.55 0.99 16 7 C 0.12 2.36 5.95 -4.98 -0.03 2.33 16 8 N -0.66 -14.43 6.22 -109.22 -0.68 -15.11 16 9 C 0.19 4.77 2.26 -68.86 -0.16 4.61 16 10 H 0.07 1.91 7.80 -51.93 -0.41 1.50 16 11 C -0.51 -13.88 8.58 -34.44 -0.30 -14.17 16 12 H 0.08 2.12 7.81 -52.49 -0.41 1.71 16 13 C 0.06 1.52 5.20 -17.82 -0.09 1.43 16 14 N -0.85 -23.81 9.51 55.43 0.53 -23.29 16 15 Si 0.91 21.21 29.54 -169.99 -5.02 16.19 16 16 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 17 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 18 H -0.27 -6.39 7.11 56.52 0.40 -5.98 16 19 C 0.39 9.75 2.74 37.16 0.10 9.85 16 20 F -0.21 -5.11 16.31 2.25 0.04 -5.08 16 21 F -0.14 -3.72 12.91 2.25 0.03 -3.69 16 22 F -0.23 -5.23 15.04 2.25 0.03 -5.19 16 23 N -0.27 -4.81 12.42 33.67 0.42 -4.40 16 24 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.09 0.54 8.07 -51.93 -0.42 0.12 16 29 H 0.17 1.35 8.06 -52.49 -0.42 0.93 16 30 H 0.14 1.92 8.06 -52.48 -0.42 1.50 16 31 H 0.08 1.61 8.06 -51.93 -0.42 1.19 16 32 H 0.06 1.08 6.02 -51.93 -0.31 0.76 16 33 H 0.34 7.23 7.88 -39.29 -0.31 6.92 16 34 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 LS Contribution 300.54 15.07 4.53 4.53 Total: -1.00 -30.57 300.54 -5.61 -36.18 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: -3.95 Total: 4.16 kcal Atomic # 6 Polarization: 2.42 SS G_CDS: -1.31 Total: 1.12 kcal Atomic # 7 Polarization: -48.25 SS G_CDS: 0.04 Total: -48.21 kcal Atomic # 9 Polarization: -14.06 SS G_CDS: 0.10 Total: -13.96 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -30.57 -5.61 -36.18 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001658562874.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.791 kcal (2) G-P(sol) polarization free energy of solvation -30.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds