Wall clock time and date at job start Mon Mar 30 2020 01:28:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46503 * 109.47420 * 2 1 4 4 C 1.34940 * 126.03757 * 124.99460 * 3 2 1 5 5 C 1.35317 * 107.74438 * 179.77616 * 4 3 2 6 6 C 1.39872 * 107.92021 * 0.23195 * 5 4 3 7 7 C 1.50701 * 125.89724 * 179.97438 * 6 5 4 8 8 N 1.46898 * 109.47287 * 95.00139 * 7 6 5 9 9 C 1.46896 * 111.00255 * 180.02562 * 8 7 6 10 10 H 1.09002 * 109.47011 * 324.99752 * 9 8 7 11 11 C 1.50704 * 109.47221 * 205.00108 * 9 8 7 12 12 H 1.08001 * 119.99676 * 359.97438 * 11 9 8 13 13 C 1.37877 * 120.00027 * 179.97438 * 11 9 8 14 14 N 1.31508 * 120.00266 * 359.97438 * 13 11 9 15 15 Si 1.86804 * 119.99730 * 179.97438 * 13 11 9 16 16 H 1.48497 * 109.47092 * 60.00270 * 15 13 11 17 17 H 1.48505 * 109.46842 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.47146 * 299.99814 * 15 13 11 19 19 C 1.53001 * 109.47375 * 84.99700 * 9 8 7 20 20 F 1.39900 * 109.46975 * 59.99986 * 19 9 8 21 21 F 1.39899 * 109.47296 * 179.97438 * 19 9 8 22 22 F 1.39893 * 109.47308 * 300.00219 * 19 9 8 23 23 N 1.30838 * 108.20312 * 359.97438 * 6 5 4 24 24 H 1.09001 * 109.47104 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47042 * 299.99805 * 1 2 3 26 26 H 1.09000 * 109.47085 * 59.99765 * 1 2 3 27 27 H 1.09005 * 109.47317 * 240.00222 * 2 1 3 28 28 H 1.08999 * 109.47532 * 120.00525 * 2 1 3 29 29 H 1.08002 * 126.13053 * 0.04913 * 4 3 2 30 30 H 1.08004 * 126.04102 * 180.24995 * 5 4 3 31 31 H 1.08998 * 109.46884 * 215.00109 * 7 6 5 32 32 H 1.09002 * 109.47503 * 335.00288 * 7 6 5 33 33 H 1.00905 * 110.99781 * 303.95244 * 8 7 6 34 34 H 0.96995 * 120.00443 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.8731 1.9211 0.8939 5 6 3.0756 3.2122 0.5431 6 6 2.3146 3.4716 -0.6015 7 6 2.2403 4.7866 -1.3338 8 7 3.2020 4.7838 -2.4443 9 6 3.1579 6.0531 -3.1822 10 1 2.1339 6.4262 -3.2026 11 6 3.6398 5.8312 -4.5927 12 1 3.9484 4.8458 -4.9092 13 6 3.6868 6.8862 -5.4792 14 7 3.3106 8.0860 -5.0940 15 14 4.2849 6.6112 -7.2274 16 1 3.4101 5.6169 -7.8992 17 1 4.2402 7.8945 -7.9734 18 1 5.6803 6.1040 -7.1992 19 6 4.0600 7.0770 -2.4901 20 9 5.3742 6.5982 -2.4639 21 9 4.0184 8.2858 -3.1932 22 9 3.6126 7.2830 -1.1808 23 7 1.6785 2.3755 -0.9265 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 3.3193 1.4125 1.7357 30 1 3.7126 3.9176 1.0560 31 1 1.2331 4.9277 -1.7258 32 1 2.4803 5.5988 -0.6476 33 1 4.1355 4.5903 -2.1137 34 1 3.3440 8.8283 -5.7175 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001658562874.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:04 Heat of formation + Delta-G solvation = -77.194835 kcal Electronic energy + Delta-G solvation = -22021.723958 eV Core-core repulsion = 18155.361113 eV Total energy + Delta-G solvation = -3866.362845 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.110 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -50.47353 -48.11614 -47.70276 -42.05261 -37.65519 -35.47808 -34.45296 -31.79011 -30.63264 -29.44162 -26.65210 -26.09526 -23.77417 -22.87264 -21.93605 -20.64958 -19.22699 -18.72376 -18.71062 -18.09338 -17.63443 -16.71435 -16.27916 -15.83978 -15.30774 -15.25442 -15.07637 -14.72663 -14.53321 -14.48626 -14.31074 -14.19596 -13.99804 -13.88456 -13.81969 -13.25347 -12.93796 -12.90331 -12.72016 -12.53827 -12.42881 -12.20766 -12.03045 -11.51268 -11.37251 -10.57485 -10.21155 -9.49342 -9.31475 -8.13163 -6.36757 1.01298 1.46153 1.48129 1.56279 1.69958 1.82192 2.40364 2.45110 2.98404 3.36926 3.57492 3.75778 3.81262 4.01241 4.06246 4.14628 4.18297 4.35512 4.40900 4.61433 4.69345 4.83308 4.84745 4.91408 4.97630 5.17368 5.27903 5.61823 5.69870 5.79123 6.21191 6.27784 6.41334 6.70919 6.86144 7.31565 8.78806 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.023544 B = 0.004891 C = 0.004327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.996159 B = 5723.154077 C = 6468.926418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.121 3.879 3 N -0.376 5.376 4 C 0.066 3.934 5 C -0.291 4.291 6 C 0.064 3.936 7 C 0.130 3.870 8 N -0.662 5.662 9 C 0.198 3.802 10 H 0.054 0.946 11 C -0.533 4.533 12 H 0.070 0.930 13 C 0.013 3.987 14 N -0.877 5.877 15 Si 0.973 3.027 16 H -0.268 1.268 17 H -0.280 1.280 18 H -0.272 1.272 19 C 0.397 3.603 20 F -0.206 7.206 21 F -0.152 7.152 22 F -0.218 7.218 23 N -0.316 5.316 24 H 0.101 0.899 25 H 0.055 0.945 26 H 0.041 0.959 27 H 0.084 0.916 28 H 0.136 0.864 29 H 0.220 0.780 30 H 0.154 0.846 31 H 0.071 0.929 32 H 0.060 0.940 33 H 0.339 0.661 34 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.612 -12.972 12.396 18.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.002 3.998 3 N -0.160 5.160 4 C -0.080 4.080 5 C -0.320 4.320 6 C -0.102 4.102 7 C 0.000 4.000 8 N -0.293 5.293 9 C 0.087 3.913 10 H 0.072 0.928 11 C -0.570 4.570 12 H 0.088 0.912 13 C -0.191 4.191 14 N -0.513 5.513 15 Si 0.797 3.203 16 H -0.193 1.193 17 H -0.205 1.205 18 H -0.198 1.198 19 C 0.340 3.660 20 F -0.188 7.188 21 F -0.133 7.133 22 F -0.200 7.200 23 N -0.140 5.140 24 H 0.120 0.880 25 H 0.074 0.926 26 H 0.060 0.940 27 H 0.102 0.898 28 H 0.154 0.846 29 H 0.237 0.763 30 H 0.171 0.829 31 H 0.090 0.910 32 H 0.078 0.922 33 H 0.157 0.843 34 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -2.935 -13.802 11.105 17.957 hybrid contribution 1.408 1.552 0.392 2.132 sum -1.527 -12.250 11.497 16.870 Atomic orbital electron populations 1.22011 0.93913 1.03920 1.01947 1.22065 0.96145 0.75943 1.05638 1.49145 1.35517 1.10723 1.20574 1.23149 0.94331 0.94060 0.96488 1.21678 1.10189 0.98454 1.01697 1.22141 0.97438 0.94441 0.96199 1.20392 0.97357 0.90983 0.91317 1.60549 1.10513 1.32460 1.25751 1.20225 0.94542 0.83096 0.93485 0.92812 1.20991 1.45998 0.96261 0.93780 0.91190 1.25896 0.95235 0.94543 1.03403 1.70468 1.44902 1.00474 1.35430 0.85380 0.78885 0.77526 0.78501 1.19302 1.20530 1.19751 1.24121 0.80872 0.85664 0.75345 1.92983 1.40792 1.88592 1.96442 1.93384 1.96020 1.47709 1.76184 1.92990 1.89200 1.95878 1.41977 1.77274 1.24938 0.97506 1.14235 0.88018 0.92600 0.93986 0.89787 0.84632 0.76345 0.82855 0.91021 0.92177 0.84258 0.92485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.49 10.10 71.98 0.73 -1.76 16 2 C 0.12 1.86 7.23 86.38 0.62 2.49 16 3 N -0.38 -9.45 3.68 -348.05 -1.28 -10.73 16 4 C 0.07 1.42 11.45 83.54 0.96 2.38 16 5 C -0.29 -8.21 10.74 21.99 0.24 -7.98 16 6 C 0.06 2.25 6.73 43.10 0.29 2.54 16 7 C 0.13 5.09 5.95 85.56 0.51 5.60 16 8 N -0.66 -29.50 6.22 -499.46 -3.11 -32.60 16 9 C 0.20 10.05 2.26 44.17 0.10 10.15 16 10 H 0.05 2.92 7.80 -2.39 -0.02 2.90 16 11 C -0.53 -29.24 8.58 25.60 0.22 -29.02 16 12 H 0.07 3.87 7.81 -2.91 -0.02 3.85 16 13 C 0.01 0.71 5.20 84.66 0.44 1.15 16 14 N -0.88 -49.44 9.51 21.45 0.20 -49.23 16 15 Si 0.97 43.45 29.54 68.60 2.03 45.47 16 16 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 17 H -0.28 -12.13 7.11 99.48 0.71 -11.43 16 18 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 19 C 0.40 19.86 2.74 71.98 0.20 20.06 16 20 F -0.21 -10.14 16.31 44.97 0.73 -9.41 16 21 F -0.15 -8.39 12.91 44.97 0.58 -7.81 16 22 F -0.22 -9.87 15.04 44.97 0.68 -9.19 16 23 N -0.32 -11.14 12.42 -47.38 -0.59 -11.73 16 24 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 25 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 26 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 27 H 0.08 1.30 8.14 -2.38 -0.02 1.28 16 28 H 0.14 0.91 8.07 -2.39 -0.02 0.89 16 29 H 0.22 2.27 8.06 -2.91 -0.02 2.25 16 30 H 0.15 3.87 8.06 -2.91 -0.02 3.85 16 31 H 0.07 2.91 8.06 -2.39 -0.02 2.89 16 32 H 0.06 2.28 6.02 -2.39 -0.01 2.27 16 33 H 0.34 14.72 7.88 -89.69 -0.71 14.01 16 34 H 0.27 14.26 8.31 -92.71 -0.77 13.48 16 Total: -1.00 -66.89 300.54 3.97 -62.91 By element: Atomic # 1 Polarization: 16.30 SS G_CDS: 0.43 Total: 16.72 kcal Atomic # 6 Polarization: 1.30 SS G_CDS: 4.30 Total: 5.60 kcal Atomic # 7 Polarization: -99.52 SS G_CDS: -4.77 Total: -104.29 kcal Atomic # 9 Polarization: -28.41 SS G_CDS: 1.99 Total: -26.42 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.47 kcal Total: -66.89 3.97 -62.91 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001658562874.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.280 kcal (2) G-P(sol) polarization free energy of solvation -66.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds