Wall clock time and date at job start Mon Mar 30 2020 02:08:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.34776 * 120.00656 * 2 1 4 4 O 1.21282 * 119.99366 * 0.02562 * 3 2 1 5 5 C 1.50691 * 120.00371 * 179.97438 * 3 2 1 6 6 N 1.46502 * 109.47227 * 180.02562 * 5 3 2 7 7 C 1.34774 * 120.00285 * 180.02562 * 6 5 3 8 8 O 1.21589 * 119.99654 * 359.97438 * 7 6 5 9 9 N 1.34774 * 120.00434 * 180.02562 * 7 6 5 10 10 C 1.39955 * 120.00258 * 184.68530 * 9 7 6 11 11 C 1.39285 * 119.94958 * 324.30424 * 10 9 7 12 12 C 1.38484 * 120.43234 * 179.97438 * 11 10 9 13 13 C 1.37687 * 120.32060 * 0.29666 * 12 11 10 14 14 C 1.40744 * 119.88009 * 359.42665 * 13 12 11 15 15 C 1.41408 * 120.20963 * 180.31677 * 14 13 12 16 16 H 1.08005 * 120.00180 * 331.90073 * 15 14 13 17 17 C 1.39931 * 120.00413 * 151.90504 * 15 14 13 18 18 N 1.30827 * 120.00354 * 161.35670 * 17 15 14 19 19 Si 1.86807 * 119.99529 * 341.35761 * 17 15 14 20 20 H 1.48502 * 109.47039 * 90.53832 * 19 17 15 21 21 H 1.48498 * 109.46809 * 210.53773 * 19 17 15 22 22 H 1.48502 * 109.47154 * 330.53865 * 19 17 15 23 23 C 1.38244 * 119.94596 * 144.27521 * 10 9 7 24 24 H 1.09004 * 109.47103 * 300.00169 * 1 2 3 25 25 H 1.09007 * 109.47276 * 60.00013 * 1 2 3 26 26 H 1.08996 * 109.47523 * 180.02562 * 1 2 3 27 27 H 0.96999 * 119.99849 * 180.02562 * 2 1 3 28 28 H 1.09004 * 109.47171 * 59.99983 * 5 3 2 29 29 H 1.08998 * 109.47251 * 299.99923 * 5 3 2 30 30 H 0.97000 * 120.00178 * 359.97438 * 6 5 3 31 31 H 0.97002 * 119.99889 * 4.67977 * 9 7 6 32 32 H 1.08001 * 119.78178 * 359.97438 * 11 10 9 33 33 H 1.08001 * 119.83975 * 180.02562 * 12 11 10 34 34 H 1.08001 * 120.05864 * 179.70655 * 13 12 11 35 35 H 0.96999 * 119.99709 * 179.97438 * 18 17 15 36 36 H 1.08001 * 120.15588 * 359.97438 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 1.5325 2.2175 0.0005 5 6 3.6459 1.1670 0.0006 6 7 4.1343 2.5482 0.0011 7 6 5.4593 2.7945 0.0011 8 8 6.2494 1.8703 0.0012 9 7 5.9087 4.0651 0.0021 10 6 7.2809 4.3222 -0.0968 11 6 8.1945 3.4671 0.5150 12 6 9.5544 3.7117 0.4230 13 6 10.0183 4.8074 -0.2699 14 6 9.1072 5.6769 -0.8982 15 6 9.5764 6.8006 -1.6172 16 1 10.5122 7.2649 -1.3432 17 6 8.8281 7.3111 -2.6837 18 7 9.0453 8.5281 -3.1119 19 14 7.5189 6.2548 -3.4962 20 1 6.2160 6.4722 -2.8176 21 1 7.3997 6.6288 -4.9283 22 1 7.9004 4.8237 -3.3884 23 6 7.7274 5.4241 -0.8022 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.9499 -0.8400 -0.0004 28 1 4.0095 0.6530 -0.8892 29 1 4.0088 0.6534 0.8908 30 1 3.5040 3.2856 0.0006 31 1 5.2811 4.8015 0.0713 32 1 7.8399 2.6078 1.0647 33 1 10.2544 3.0422 0.9008 34 1 11.0796 4.9967 -0.3349 35 1 8.5268 8.8818 -3.8515 36 1 7.0198 6.0872 -1.2776 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001671984015.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:45 Heat of formation + Delta-G solvation = -38.657007 kcal Electronic energy + Delta-G solvation = -20572.392310 eV Core-core repulsion = 17249.557331 eV Total energy + Delta-G solvation = -3322.834979 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.47414 -39.63535 -37.57612 -35.15120 -34.55654 -34.19251 -33.27532 -30.29152 -29.59004 -28.08329 -25.78676 -25.09903 -21.71393 -21.55680 -20.92758 -20.02732 -18.75815 -17.46964 -17.22176 -16.60062 -16.23664 -15.99073 -15.37349 -15.06398 -14.61056 -14.39077 -14.29604 -13.83215 -13.44769 -13.28537 -12.89881 -12.72523 -12.71397 -12.44360 -12.00518 -11.48854 -10.92516 -10.74283 -10.50836 -10.39904 -10.23517 -9.87838 -9.63803 -9.58159 -9.19047 -9.14615 -9.05696 -7.58207 -7.12491 -6.91534 -4.45086 2.17227 2.39167 2.57091 2.72327 3.09486 3.13051 3.21060 3.37099 3.52626 4.01334 4.27534 4.47891 4.56636 4.79802 5.03618 5.12661 5.14944 5.36148 5.47437 5.87822 6.06194 6.27859 6.43799 6.53716 6.59062 6.73261 6.79212 6.95992 7.07555 7.22616 7.50360 7.64093 7.71424 7.79736 7.88448 8.16411 8.27086 8.39078 8.67868 8.84836 8.85287 10.11076 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.024559 B = 0.004066 C = 0.003610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.848956 B = 6883.974795 C = 7753.663849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.732 5.732 3 C 0.509 3.491 4 O -0.535 6.535 5 C 0.123 3.877 6 N -0.741 5.741 7 C 0.705 3.295 8 O -0.573 6.573 9 N -0.681 5.681 10 C 0.188 3.812 11 C -0.229 4.229 12 C -0.075 4.075 13 C -0.215 4.215 14 C 0.106 3.894 15 C -0.449 4.449 16 H 0.092 0.908 17 C 0.085 3.915 18 N -0.811 5.811 19 Si 0.915 3.085 20 H -0.272 1.272 21 H -0.293 1.293 22 H -0.247 1.247 23 C -0.267 4.267 24 H 0.061 0.939 25 H 0.061 0.939 26 H 0.077 0.923 27 H 0.406 0.594 28 H 0.099 0.901 29 H 0.099 0.901 30 H 0.406 0.594 31 H 0.400 0.600 32 H 0.113 0.887 33 H 0.098 0.902 34 H 0.101 0.899 35 H 0.284 0.716 36 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.208 -14.616 4.461 21.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.385 5.385 3 C 0.295 3.705 4 O -0.411 6.411 5 C -0.006 4.006 6 N -0.401 5.401 7 C 0.406 3.594 8 O -0.449 6.449 9 N -0.327 5.327 10 C 0.096 3.904 11 C -0.250 4.250 12 C -0.094 4.094 13 C -0.235 4.235 14 C 0.102 3.898 15 C -0.478 4.478 16 H 0.109 0.891 17 C -0.133 4.133 18 N -0.435 5.435 19 Si 0.742 3.258 20 H -0.199 1.199 21 H -0.221 1.221 22 H -0.171 1.171 23 C -0.289 4.289 24 H 0.080 0.920 25 H 0.080 0.920 26 H 0.096 0.904 27 H 0.240 0.760 28 H 0.116 0.884 29 H 0.117 0.883 30 H 0.243 0.757 31 H 0.235 0.765 32 H 0.131 0.869 33 H 0.116 0.884 34 H 0.119 0.881 35 H 0.095 0.905 36 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -14.984 -14.479 4.280 21.271 hybrid contribution -1.131 -0.026 -0.488 1.232 sum -16.114 -14.504 3.792 22.010 Atomic orbital electron populations 1.21571 0.79067 1.02463 1.02574 1.45673 1.08054 1.08645 1.76124 1.20698 0.90174 0.83992 0.75669 1.90717 1.70092 1.31221 1.49057 1.20800 0.89631 0.85213 1.04945 1.44750 1.06059 1.07848 1.81482 1.15800 0.81766 0.83835 0.78024 1.90925 1.54188 1.43090 1.56706 1.42591 1.07777 1.06044 1.76289 1.17271 0.79751 0.96334 0.97082 1.20500 0.92372 1.03048 1.09094 1.20562 0.94364 0.96626 0.97877 1.21054 0.98134 0.97188 1.07082 1.17475 0.90114 0.91233 0.90970 1.19442 1.07366 1.08784 1.12159 0.89053 1.26126 0.96412 0.94215 0.96563 1.69703 1.36917 1.14012 1.22876 0.86327 0.80275 0.82683 0.76516 1.19888 1.22115 1.17051 1.20843 0.96217 1.02239 1.09551 0.92032 0.92023 0.90392 0.75980 0.88353 0.88347 0.75685 0.76542 0.86857 0.88432 0.88104 0.90548 0.87686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.48 10.70 59.84 0.64 1.12 16 2 N -0.73 -4.67 5.71 -67.08 -0.38 -5.06 16 3 C 0.51 5.08 7.90 -10.99 -0.09 4.99 16 4 O -0.53 -7.28 15.67 5.56 0.09 -7.20 16 5 C 0.12 1.28 6.15 -5.20 -0.03 1.24 16 6 N -0.74 -10.11 5.53 -66.42 -0.37 -10.48 16 7 C 0.71 12.62 8.40 -86.92 -0.73 11.89 16 8 O -0.57 -11.96 13.80 5.29 0.07 -11.89 16 9 N -0.68 -12.74 5.34 -14.27 -0.08 -12.81 16 10 C 0.19 4.27 6.28 -83.76 -0.53 3.74 16 11 C -0.23 -5.22 8.70 -39.10 -0.34 -5.56 16 12 C -0.08 -1.67 10.02 -39.69 -0.40 -2.07 16 13 C -0.21 -5.13 9.79 -38.84 -0.38 -5.51 16 14 C 0.11 2.73 5.14 -106.85 -0.55 2.18 16 15 C -0.45 -12.27 9.57 -37.74 -0.36 -12.63 16 16 H 0.09 2.59 8.06 -52.48 -0.42 2.17 16 17 C 0.09 2.27 5.41 -17.35 -0.09 2.17 16 18 N -0.81 -21.83 13.93 55.55 0.77 -21.06 16 19 Si 0.91 21.54 24.55 -169.99 -4.17 17.37 16 20 H -0.27 -6.15 6.44 56.52 0.36 -5.78 16 21 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 22 H -0.25 -6.13 7.04 56.52 0.40 -5.73 16 23 C -0.27 -6.53 7.21 -38.69 -0.28 -6.81 16 24 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 25 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 26 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 27 H 0.41 1.35 8.83 -40.82 -0.36 0.99 16 28 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.41 5.19 7.46 -40.82 -0.30 4.89 16 31 H 0.40 6.27 8.84 -40.82 -0.36 5.91 16 32 H 0.11 2.55 6.25 -52.49 -0.33 2.22 16 33 H 0.10 1.87 8.06 -52.49 -0.42 1.45 16 34 H 0.10 2.25 8.06 -52.49 -0.42 1.83 16 35 H 0.28 6.95 8.30 -40.82 -0.34 6.61 16 36 H 0.11 2.54 4.42 -52.49 -0.23 2.31 16 LS Contribution 309.35 15.07 4.66 4.66 Total: -1.00 -33.67 309.35 -6.68 -40.35 By element: Atomic # 1 Polarization: 15.50 SS G_CDS: -4.14 Total: 11.36 kcal Atomic # 6 Polarization: -2.11 SS G_CDS: -3.14 Total: -5.25 kcal Atomic # 7 Polarization: -49.35 SS G_CDS: -0.05 Total: -49.41 kcal Atomic # 8 Polarization: -19.24 SS G_CDS: 0.16 Total: -19.08 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.17 Total: 17.37 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -33.67 -6.68 -40.35 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671984015.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.692 kcal (2) G-P(sol) polarization free energy of solvation -33.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds