Wall clock time and date at job start Mon Mar 30 2020 02:08:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.34776 * 120.00656 * 2 1 4 4 O 1.21282 * 119.99366 * 0.02562 * 3 2 1 5 5 C 1.50691 * 120.00371 * 179.97438 * 3 2 1 6 6 N 1.46502 * 109.47227 * 180.02562 * 5 3 2 7 7 C 1.34774 * 120.00285 * 180.02562 * 6 5 3 8 8 O 1.21589 * 119.99654 * 359.97438 * 7 6 5 9 9 N 1.34774 * 120.00434 * 180.02562 * 7 6 5 10 10 C 1.39955 * 120.00258 * 184.68530 * 9 7 6 11 11 C 1.39285 * 119.94958 * 324.30424 * 10 9 7 12 12 C 1.38484 * 120.43234 * 179.97438 * 11 10 9 13 13 C 1.37687 * 120.32060 * 0.29666 * 12 11 10 14 14 C 1.40744 * 119.88009 * 359.42665 * 13 12 11 15 15 C 1.41408 * 120.20963 * 180.31677 * 14 13 12 16 16 H 1.08005 * 120.00180 * 331.90073 * 15 14 13 17 17 C 1.39931 * 120.00413 * 151.90504 * 15 14 13 18 18 N 1.30827 * 120.00354 * 161.35670 * 17 15 14 19 19 Si 1.86807 * 119.99529 * 341.35761 * 17 15 14 20 20 H 1.48502 * 109.47039 * 90.53832 * 19 17 15 21 21 H 1.48498 * 109.46809 * 210.53773 * 19 17 15 22 22 H 1.48502 * 109.47154 * 330.53865 * 19 17 15 23 23 C 1.38244 * 119.94596 * 144.27521 * 10 9 7 24 24 H 1.09004 * 109.47103 * 300.00169 * 1 2 3 25 25 H 1.09007 * 109.47276 * 60.00013 * 1 2 3 26 26 H 1.08996 * 109.47523 * 180.02562 * 1 2 3 27 27 H 0.96999 * 119.99849 * 180.02562 * 2 1 3 28 28 H 1.09004 * 109.47171 * 59.99983 * 5 3 2 29 29 H 1.08998 * 109.47251 * 299.99923 * 5 3 2 30 30 H 0.97000 * 120.00178 * 359.97438 * 6 5 3 31 31 H 0.97002 * 119.99889 * 4.67977 * 9 7 6 32 32 H 1.08001 * 119.78178 * 359.97438 * 11 10 9 33 33 H 1.08001 * 119.83975 * 180.02562 * 12 11 10 34 34 H 1.08001 * 120.05864 * 179.70655 * 13 12 11 35 35 H 0.96999 * 119.99709 * 179.97438 * 18 17 15 36 36 H 1.08001 * 120.15588 * 359.97438 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 1.5325 2.2175 0.0005 5 6 3.6459 1.1670 0.0006 6 7 4.1343 2.5482 0.0011 7 6 5.4593 2.7945 0.0011 8 8 6.2494 1.8703 0.0012 9 7 5.9087 4.0651 0.0021 10 6 7.2809 4.3222 -0.0968 11 6 8.1945 3.4671 0.5150 12 6 9.5544 3.7117 0.4230 13 6 10.0183 4.8074 -0.2699 14 6 9.1072 5.6769 -0.8982 15 6 9.5764 6.8006 -1.6172 16 1 10.5122 7.2649 -1.3432 17 6 8.8281 7.3111 -2.6837 18 7 9.0453 8.5281 -3.1119 19 14 7.5189 6.2548 -3.4962 20 1 6.2160 6.4722 -2.8176 21 1 7.3997 6.6288 -4.9283 22 1 7.9004 4.8237 -3.3884 23 6 7.7274 5.4241 -0.8022 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.9499 -0.8400 -0.0004 28 1 4.0095 0.6530 -0.8892 29 1 4.0088 0.6534 0.8908 30 1 3.5040 3.2856 0.0006 31 1 5.2811 4.8015 0.0713 32 1 7.8399 2.6078 1.0647 33 1 10.2544 3.0422 0.9008 34 1 11.0796 4.9967 -0.3349 35 1 8.5268 8.8818 -3.8515 36 1 7.0198 6.0872 -1.2776 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001671984015.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:44 Heat of formation + Delta-G solvation = -65.470070 kcal Electronic energy + Delta-G solvation = -20573.555012 eV Core-core repulsion = 17249.557331 eV Total energy + Delta-G solvation = -3323.997680 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.69725 -40.70527 -39.29038 -36.16435 -35.84490 -35.47268 -35.12370 -32.19752 -30.87813 -29.31620 -27.05636 -26.55060 -23.39810 -23.15698 -21.73417 -21.58301 -20.09186 -19.22980 -18.49145 -17.57661 -17.49702 -17.14655 -16.82418 -16.42141 -16.18510 -15.89817 -15.47387 -15.20996 -14.74145 -14.52945 -14.31096 -14.23718 -13.91538 -13.53209 -13.28083 -13.10039 -12.73638 -12.65956 -12.30613 -12.10258 -11.72831 -11.27057 -11.22392 -11.00084 -10.88318 -10.36791 -10.17256 -9.48380 -8.91968 -8.86880 -6.49850 0.70156 0.83327 1.22901 1.34074 1.40736 1.42752 1.47686 2.04266 2.10200 2.24588 2.63697 3.17095 3.53614 3.64939 4.29357 4.31689 4.34092 4.45788 4.59568 4.62141 4.72745 4.84658 4.94907 4.98677 5.01438 5.21299 5.29338 5.31993 5.57404 5.72221 5.89426 5.91360 6.03463 6.25378 6.38264 6.42581 6.73741 6.83300 6.91182 7.07465 7.42589 8.17672 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.024559 B = 0.004066 C = 0.003610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.848956 B = 6883.974795 C = 7753.663849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.715 5.715 3 C 0.511 3.489 4 O -0.576 6.576 5 C 0.119 3.881 6 N -0.727 5.727 7 C 0.706 3.294 8 O -0.602 6.602 9 N -0.679 5.679 10 C 0.191 3.809 11 C -0.227 4.227 12 C -0.070 4.070 13 C -0.229 4.229 14 C 0.087 3.913 15 C -0.481 4.481 16 H 0.062 0.938 17 C 0.053 3.947 18 N -0.846 5.846 19 Si 0.965 3.035 20 H -0.255 1.255 21 H -0.278 1.278 22 H -0.267 1.267 23 C -0.276 4.276 24 H 0.052 0.948 25 H 0.050 0.950 26 H 0.114 0.886 27 H 0.423 0.577 28 H 0.110 0.890 29 H 0.115 0.885 30 H 0.412 0.588 31 H 0.415 0.585 32 H 0.122 0.878 33 H 0.132 0.868 34 H 0.108 0.892 35 H 0.294 0.706 36 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.188 -17.160 4.903 24.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.367 5.367 3 C 0.297 3.703 4 O -0.456 6.456 5 C -0.008 4.008 6 N -0.386 5.386 7 C 0.406 3.594 8 O -0.481 6.481 9 N -0.327 5.327 10 C 0.097 3.903 11 C -0.248 4.248 12 C -0.088 4.088 13 C -0.249 4.249 14 C 0.084 3.916 15 C -0.511 4.511 16 H 0.081 0.919 17 C -0.162 4.162 18 N -0.472 5.472 19 Si 0.789 3.211 20 H -0.181 1.181 21 H -0.205 1.205 22 H -0.191 1.191 23 C -0.298 4.298 24 H 0.071 0.929 25 H 0.069 0.931 26 H 0.132 0.868 27 H 0.260 0.740 28 H 0.127 0.873 29 H 0.133 0.867 30 H 0.250 0.750 31 H 0.251 0.749 32 H 0.139 0.861 33 H 0.150 0.850 34 H 0.126 0.874 35 H 0.104 0.896 36 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -17.026 -17.061 4.732 24.563 hybrid contribution -0.559 0.581 -0.490 0.944 sum -17.585 -16.480 4.241 24.471 Atomic orbital electron populations 1.21726 0.78142 1.04564 1.01624 1.45598 1.08650 1.08371 1.74098 1.20619 0.89886 0.84357 0.75458 1.90707 1.70653 1.32803 1.51437 1.21044 0.90078 0.83456 1.06270 1.44668 1.04507 1.09635 1.79816 1.15854 0.82792 0.82976 0.77767 1.90899 1.55329 1.43751 1.58168 1.42484 1.06614 1.07233 1.76353 1.17303 0.81719 0.95437 0.95888 1.20785 0.92721 1.02938 1.08355 1.20911 0.94974 0.96157 0.96784 1.21247 0.98471 0.97673 1.07460 1.17652 0.91325 0.91296 0.91320 1.19442 1.07140 1.10423 1.14060 0.91944 1.26694 0.97963 0.94954 0.96544 1.69718 1.38477 1.15001 1.24008 0.85558 0.78944 0.79876 0.76682 1.18098 1.20477 1.19110 1.20880 0.95685 1.03053 1.10140 0.92913 0.93081 0.86789 0.73966 0.87268 0.86734 0.75014 0.74887 0.86061 0.84976 0.87411 0.89573 0.87653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.69 10.70 127.77 1.37 2.06 16 2 N -0.71 -7.07 5.71 -484.54 -2.77 -9.84 16 3 C 0.51 9.04 7.90 87.65 0.69 9.73 16 4 O -0.58 -14.86 15.67 -3.04 -0.05 -14.90 16 5 C 0.12 2.15 6.15 85.63 0.53 2.68 16 6 N -0.73 -18.13 5.53 -482.31 -2.67 -20.80 16 7 C 0.71 23.62 8.40 179.06 1.50 25.13 16 8 O -0.60 -23.72 13.80 -4.00 -0.06 -23.78 16 9 N -0.68 -24.04 5.34 -317.32 -1.69 -25.73 16 10 C 0.19 8.34 6.28 38.10 0.24 8.58 16 11 C -0.23 -9.85 8.70 22.58 0.20 -9.65 16 12 C -0.07 -2.95 10.02 22.20 0.22 -2.73 16 13 C -0.23 -10.85 9.79 22.75 0.22 -10.63 16 14 C 0.09 4.55 5.14 -21.31 -0.11 4.44 16 15 C -0.48 -27.23 9.57 23.46 0.22 -27.01 16 16 H 0.06 3.76 8.06 -2.91 -0.02 3.73 16 17 C 0.05 2.89 5.41 85.25 0.46 3.36 16 18 N -0.85 -46.55 13.93 21.82 0.30 -46.25 16 19 Si 0.96 44.25 24.55 68.60 1.68 45.94 16 20 H -0.26 -10.90 6.44 99.48 0.64 -10.26 16 21 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 22 H -0.27 -12.99 7.04 99.48 0.70 -12.29 16 23 C -0.28 -13.33 7.21 22.85 0.16 -13.16 16 24 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 25 H 0.05 0.57 8.14 -2.38 -0.02 0.55 16 26 H 0.11 0.14 8.14 -2.39 -0.02 0.12 16 27 H 0.42 1.33 8.83 -92.71 -0.82 0.51 16 28 H 0.11 1.80 8.14 -2.39 -0.02 1.79 16 29 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16 30 H 0.41 9.68 7.46 -92.71 -0.69 8.99 16 31 H 0.41 12.15 8.84 -92.71 -0.82 11.33 16 32 H 0.12 5.13 6.25 -2.91 -0.02 5.11 16 33 H 0.13 4.64 8.06 -2.91 -0.02 4.61 16 34 H 0.11 4.84 8.06 -2.91 -0.02 4.82 16 35 H 0.29 14.53 8.30 -92.71 -0.77 13.76 16 36 H 0.11 5.01 4.42 -2.91 -0.01 5.00 16 Total: -1.00 -72.96 309.35 -0.78 -73.74 By element: Atomic # 1 Polarization: 30.08 SS G_CDS: -1.25 Total: 28.83 kcal Atomic # 6 Polarization: -12.92 SS G_CDS: 5.71 Total: -7.21 kcal Atomic # 7 Polarization: -95.79 SS G_CDS: -6.83 Total: -102.62 kcal Atomic # 8 Polarization: -38.58 SS G_CDS: -0.10 Total: -38.68 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 1.68 Total: 45.94 kcal Total: -72.96 -0.78 -73.74 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671984015.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.270 kcal (2) G-P(sol) polarization free energy of solvation -72.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds