Wall clock time and date at job start Mon Mar 30 2020 01:26:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08993 * 109.47118 * 2 1 4 4 C 1.50691 * 109.47144 * 239.99319 * 2 1 3 5 5 H 1.07999 * 120.00353 * 245.64803 * 4 2 1 6 6 C 1.37886 * 119.99858 * 65.65791 * 4 2 1 7 7 N 1.31510 * 120.00069 * 197.73582 * 6 4 2 8 8 Si 1.86803 * 119.99838 * 18.00580 * 6 4 2 9 9 H 1.48499 * 109.46704 * 179.72840 * 8 6 4 10 10 H 1.48497 * 109.47096 * 299.72861 * 8 6 4 11 11 H 1.48502 * 109.47125 * 59.72869 * 8 6 4 12 12 N 1.46507 * 109.46742 * 119.99622 * 2 1 3 13 13 C 1.34780 * 120.00028 * 275.00099 * 12 2 1 14 14 O 1.21586 * 119.99481 * 0.02562 * 13 12 2 15 15 N 1.34773 * 119.99665 * 180.02562 * 13 12 2 16 16 C 1.39949 * 119.99571 * 184.71163 * 15 13 12 17 17 C 1.38937 * 120.03421 * 322.75152 * 16 15 13 18 18 C 1.38144 * 120.06905 * 179.72460 * 17 16 15 19 19 C 1.38180 * 120.13717 * 0.54915 * 18 17 16 20 20 C 1.38899 * 120.06916 * 359.72818 * 19 18 17 21 21 N 1.39924 * 120.03451 * 180.02562 * 20 19 18 22 22 C 1.34777 * 120.00087 * 212.97650 * 21 20 19 23 23 O 1.21287 * 119.99979 * 5.06334 * 22 21 20 24 24 C 1.38723 * 120.03194 * 143.02682 * 16 15 13 25 25 H 1.08994 * 109.47114 * 295.32009 * 1 2 3 26 26 H 1.09001 * 109.46983 * 55.31925 * 1 2 3 27 27 H 1.08999 * 109.47427 * 175.31597 * 1 2 3 28 28 H 0.97009 * 119.99835 * 355.21984 * 7 6 4 29 29 H 0.97004 * 119.99712 * 95.00154 * 12 2 1 30 30 H 0.97001 * 120.00296 * 4.71465 * 15 13 12 31 31 H 1.08004 * 119.96871 * 359.97438 * 17 16 15 32 32 H 1.07998 * 119.92865 * 180.27794 * 18 17 16 33 33 H 1.07998 * 119.96497 * 179.70180 * 19 18 17 34 34 H 0.97005 * 120.00150 * 32.98263 * 21 20 19 35 35 H 1.07996 * 120.00115 * 185.06305 * 22 21 20 36 36 H 1.07998 * 120.06926 * 359.97438 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2303 5 1 2.5760 -1.6387 -1.1338 6 6 1.7981 -0.1755 -2.4793 7 7 1.9123 -0.9304 -3.5501 8 14 1.3259 1.6237 -2.6511 9 1 1.1369 1.9509 -4.0872 10 1 0.0610 1.8759 -1.9153 11 1 2.4046 2.4746 -2.0874 12 7 2.0183 -0.6906 1.1963 13 6 2.1470 -0.0182 2.3573 14 8 1.8574 1.1615 2.4118 15 7 2.5966 -0.6534 3.4576 16 6 2.6371 0.0173 4.6852 17 6 2.9807 1.3627 4.7316 18 6 3.0153 2.0269 5.9424 19 6 2.7195 1.3531 7.1120 20 6 2.3808 0.0066 7.0729 21 7 2.0809 -0.6748 8.2576 22 6 2.3944 -1.9797 8.3824 23 8 3.0178 -2.5401 7.5059 24 6 2.3396 -0.6620 5.8576 25 1 -0.3633 0.4395 0.9289 26 1 -0.3633 0.5848 -0.8451 27 1 -0.3634 -1.0242 -0.0839 28 1 2.2282 -1.8440 -3.4680 29 1 2.2490 -1.6318 1.1528 30 1 2.8923 -1.5753 3.3986 31 1 3.2172 1.8909 3.8197 32 1 3.2784 3.0738 5.9754 33 1 2.7521 1.8739 8.0576 34 1 1.6473 -0.2081 8.9892 35 1 2.0905 -2.5262 9.2628 36 1 2.0761 -1.7088 5.8245 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001674861671.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:37 Heat of formation + Delta-G solvation = -30.110610 kcal Electronic energy + Delta-G solvation = -20745.479024 eV Core-core repulsion = 17423.014645 eV Total energy + Delta-G solvation = -3322.464379 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.68692 -39.77423 -38.10942 -35.63528 -34.73361 -33.96426 -32.42838 -30.34069 -29.75425 -28.48590 -24.83669 -23.98634 -22.96608 -21.77407 -20.76690 -19.80221 -18.67196 -18.45635 -17.48855 -17.09779 -16.22614 -15.72042 -15.28316 -14.96901 -14.68511 -14.37297 -14.16685 -13.68812 -13.46015 -13.25229 -12.88829 -12.59679 -12.20010 -11.91166 -11.75947 -11.61095 -11.47168 -10.73413 -10.49117 -10.25152 -10.02418 -9.88713 -9.79662 -9.49854 -9.06817 -8.43093 -8.31742 -8.22698 -7.81302 -6.58915 -4.21647 1.27428 1.39902 2.41246 2.84057 3.15570 3.38925 3.45716 3.58804 3.61391 3.96519 4.42213 4.55087 4.78418 4.96460 5.06023 5.17887 5.39735 5.46389 5.53655 5.68384 6.16218 6.20059 6.39083 6.47108 6.52050 6.56110 6.68590 6.70461 6.91825 7.04867 7.15478 7.20537 7.39855 7.48365 7.75774 7.79263 8.24148 8.61539 8.73929 9.10993 9.47387 10.82226 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.034011 B = 0.003695 C = 0.003458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.058407 B = 7576.517602 C = 8094.118550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.258 3.742 3 H 0.042 0.958 4 C -0.618 4.618 5 H 0.061 0.939 6 C 0.039 3.961 7 N -0.897 5.897 8 Si 1.043 2.957 9 H -0.283 1.283 10 H -0.270 1.270 11 H -0.280 1.280 12 N -0.713 5.713 13 C 0.695 3.305 14 O -0.585 6.585 15 N -0.695 5.695 16 C 0.196 3.804 17 C -0.131 4.131 18 C -0.084 4.084 19 C -0.169 4.169 20 C 0.150 3.850 21 N -0.678 5.678 22 C 0.488 3.512 23 O -0.533 6.533 24 C -0.154 4.154 25 H 0.029 0.971 26 H 0.062 0.938 27 H 0.045 0.955 28 H 0.269 0.731 29 H 0.391 0.609 30 H 0.405 0.595 31 H 0.142 0.858 32 H 0.127 0.873 33 H 0.122 0.878 34 H 0.412 0.588 35 H 0.142 0.858 36 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.140 1.080 24.887 24.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.155 3.845 3 H 0.060 0.940 4 C -0.656 4.656 5 H 0.080 0.920 6 C -0.167 4.167 7 N -0.530 5.530 8 Si 0.870 3.130 9 H -0.209 1.209 10 H -0.196 1.196 11 H -0.206 1.206 12 N -0.363 5.363 13 C 0.395 3.605 14 O -0.463 6.463 15 N -0.343 5.343 16 C 0.099 3.901 17 C -0.152 4.152 18 C -0.103 4.103 19 C -0.190 4.190 20 C 0.056 3.944 21 N -0.326 5.326 22 C 0.257 3.743 23 O -0.406 6.406 24 C -0.177 4.177 25 H 0.049 0.951 26 H 0.080 0.920 27 H 0.064 0.936 28 H 0.079 0.921 29 H 0.224 0.776 30 H 0.240 0.760 31 H 0.160 0.840 32 H 0.145 0.855 33 H 0.140 0.860 34 H 0.247 0.753 35 H 0.158 0.842 36 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -0.452 2.780 23.068 23.239 hybrid contribution 0.470 -2.018 1.527 2.574 sum 0.018 0.762 24.595 24.607 Atomic orbital electron populations 1.22538 0.98962 1.00841 0.99827 1.18935 0.90416 0.93922 0.81248 0.94040 1.22078 1.41893 1.10602 0.91064 0.92043 1.25691 0.94162 1.05219 0.91657 1.70884 1.41083 1.09678 1.31371 0.84081 0.77661 0.75051 0.76174 1.20906 1.19647 1.20569 1.45590 1.68541 1.13528 1.08690 1.16138 0.78516 0.85447 0.80386 1.90863 1.57276 1.14019 1.84100 1.42787 1.68355 1.16623 1.06535 1.17327 0.96465 0.92189 0.84073 1.21395 1.00699 0.93930 0.99171 1.20824 0.98492 0.99647 0.91385 1.20769 1.05942 0.93368 0.98941 1.17387 0.99882 0.91651 0.85479 1.44117 1.60201 1.12081 1.16248 1.22881 0.78625 0.81398 0.91392 1.90757 1.37897 1.68117 1.43801 1.20764 1.05386 1.01433 0.90074 0.95146 0.91958 0.93553 0.92109 0.77629 0.76002 0.84003 0.85478 0.86029 0.75256 0.84228 0.84782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.76 9.16 37.16 0.34 -3.42 16 2 C 0.26 6.31 2.14 -69.08 -0.15 6.16 16 3 H 0.04 1.09 6.22 -51.93 -0.32 0.77 16 4 C -0.62 -16.87 9.00 -34.44 -0.31 -17.18 16 5 H 0.06 1.75 7.96 -52.49 -0.42 1.33 16 6 C 0.04 1.11 5.34 -17.82 -0.10 1.02 16 7 N -0.90 -26.82 13.70 55.43 0.76 -26.06 16 8 Si 1.04 25.19 26.43 -169.99 -4.49 20.70 16 9 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 10 H -0.27 -6.11 5.52 56.52 0.31 -5.80 16 11 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 12 N -0.71 -14.82 5.07 -59.81 -0.30 -15.12 16 13 C 0.69 14.01 8.36 -86.92 -0.73 13.28 16 14 O -0.58 -13.53 13.57 5.29 0.07 -13.46 16 15 N -0.70 -11.27 5.34 -14.24 -0.08 -11.35 16 16 C 0.20 3.09 6.26 -83.71 -0.52 2.57 16 17 C -0.13 -2.05 8.68 -39.36 -0.34 -2.39 16 18 C -0.08 -1.03 10.03 -39.64 -0.40 -1.43 16 19 C -0.17 -1.78 9.96 -39.36 -0.39 -2.17 16 20 C 0.15 1.71 6.28 -83.72 -0.53 1.18 16 21 N -0.68 -4.94 5.35 -13.76 -0.07 -5.02 16 22 C 0.49 3.78 12.39 54.06 0.67 4.45 16 23 O -0.53 -7.03 14.83 5.55 0.08 -6.94 16 24 C -0.15 -2.14 8.58 -39.21 -0.34 -2.48 16 25 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 26 H 0.06 1.45 4.84 -51.93 -0.25 1.20 16 27 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 28 H 0.27 7.95 8.73 -40.82 -0.36 7.59 16 29 H 0.39 7.21 8.54 -40.82 -0.35 6.86 16 30 H 0.40 5.46 8.84 -40.82 -0.36 5.09 16 31 H 0.14 2.52 6.38 -52.48 -0.33 2.18 16 32 H 0.13 1.26 8.06 -52.49 -0.42 0.83 16 33 H 0.12 0.90 8.06 -52.49 -0.42 0.47 16 34 H 0.41 1.37 8.92 -40.82 -0.36 1.00 16 35 H 0.14 0.34 8.06 -52.49 -0.42 -0.08 16 36 H 0.13 1.91 6.38 -52.49 -0.34 1.58 16 LS Contribution 307.48 15.07 4.63 4.63 Total: -1.00 -35.47 307.48 -6.28 -41.75 By element: Atomic # 1 Polarization: 15.37 SS G_CDS: -4.09 Total: 11.28 kcal Atomic # 6 Polarization: 2.38 SS G_CDS: -2.79 Total: -0.41 kcal Atomic # 7 Polarization: -57.85 SS G_CDS: 0.31 Total: -57.55 kcal Atomic # 8 Polarization: -20.56 SS G_CDS: 0.15 Total: -20.40 kcal Atomic # 14 Polarization: 25.19 SS G_CDS: -4.49 Total: 20.70 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -35.47 -6.28 -41.75 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674861671.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.641 kcal (2) G-P(sol) polarization free energy of solvation -35.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds