Wall clock time and date at job start Mon Mar 30 2020 02:10:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30626 * 1 3 3 Si 1.86807 * 120.00026 * 2 1 4 4 H 1.48503 * 109.46849 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47008 * 120.00208 * 3 2 1 6 6 H 1.48503 * 109.46845 * 240.00087 * 3 2 1 7 7 C 1.40139 * 120.00225 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00127 * 179.97438 * 7 2 1 9 9 C 1.41462 * 119.99811 * 359.97438 * 7 2 1 10 10 N 1.31129 * 120.00211 * 354.95890 * 9 7 2 11 11 N 1.38449 * 120.00057 * 174.95377 * 9 7 2 12 12 C 1.47075 * 120.87967 * 5.36184 * 11 9 7 13 13 C 1.53695 * 108.27595 * 128.75136 * 12 11 9 14 14 N 1.46896 * 109.25987 * 54.08489 * 13 12 11 15 15 C 1.39815 * 111.00170 * 172.60837 * 14 13 12 16 16 C 1.38879 * 120.04921 * 124.02920 * 15 14 13 17 17 C 1.38120 * 119.94904 * 179.76470 * 16 15 14 18 18 C 1.38465 * 120.04895 * 0.50943 * 17 16 15 19 19 F 1.35098 * 119.94968 * 179.76846 * 18 17 16 20 20 C 1.38466 * 120.09855 * 359.73499 * 18 17 16 21 21 C 1.38122 * 120.04846 * 0.02562 * 20 18 17 22 22 C 1.46899 * 111.26579 * 296.75932 * 14 13 12 23 23 C 1.47077 * 120.87936 * 185.63431 * 11 9 7 24 24 H 0.97001 * 120.00209 * 359.97438 * 1 2 3 25 25 H 0.96999 * 119.99991 * 185.15163 * 10 9 7 26 26 H 1.09002 * 109.63129 * 248.52172 * 12 11 9 27 27 H 1.09007 * 109.62793 * 9.10240 * 12 11 9 28 28 H 1.09003 * 109.65315 * 294.07804 * 13 12 11 29 29 H 1.09004 * 109.44454 * 173.96239 * 13 12 11 30 30 H 1.07997 * 120.02454 * 0.02562 * 16 15 14 31 31 H 1.08006 * 119.97527 * 180.26765 * 17 16 15 32 32 H 1.07999 * 119.97233 * 179.97438 * 20 18 17 33 33 H 1.07999 * 120.02282 * 180.02562 * 21 20 18 34 34 H 1.09003 * 109.48956 * 303.14041 * 22 14 13 35 35 H 1.09000 * 109.49648 * 183.06131 * 22 14 13 36 36 H 1.08992 * 109.63278 * 350.90574 * 23 11 9 37 37 H 1.09004 * 109.62478 * 111.28880 * 23 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2403 1.6178 0.0000 4 1 1.2752 2.7465 -0.0006 5 1 3.0940 1.6964 1.2124 6 1 3.0940 1.6964 -1.2125 7 6 2.0070 -1.2136 -0.0005 8 1 3.0870 -1.2136 -0.0010 9 6 1.2997 -2.4387 -0.0005 10 7 -0.0077 -2.4410 0.0997 11 7 1.9879 -3.6354 -0.1065 12 6 3.4584 -3.6634 -0.1024 13 6 3.9180 -4.6856 0.9494 14 7 3.2735 -5.9784 0.6827 15 6 3.7907 -6.9770 1.5134 16 6 2.9398 -7.7169 2.3242 17 6 3.4524 -8.7061 3.1405 18 6 4.8147 -8.9533 3.1586 19 9 5.3145 -9.9182 3.9613 20 6 5.6655 -8.2134 2.3549 21 6 5.1567 -7.2265 1.5334 22 6 1.8138 -5.8841 0.8186 23 6 1.2678 -4.9117 -0.2322 24 1 -0.4850 0.8400 0.0004 25 1 -0.4869 -3.2810 0.1750 26 1 3.8218 -3.9579 -1.0869 27 1 3.8427 -2.6757 0.1525 28 1 3.6390 -4.3385 1.9443 29 1 5.0005 -4.8007 0.8947 30 1 1.8777 -7.5217 2.3133 31 1 2.7906 -9.2847 3.7680 32 1 6.7277 -8.4076 2.3710 33 1 5.8206 -6.6499 0.9063 34 1 1.5641 -5.5203 1.8153 35 1 1.3702 -6.8684 0.6686 36 1 0.2033 -4.7497 -0.0634 37 1 1.4219 -5.3222 -1.2302 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000004052377.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:30 Heat of formation + Delta-G solvation = 40.934851 kcal Electronic energy + Delta-G solvation = -21047.970296 eV Core-core repulsion = 17740.959469 eV Total energy + Delta-G solvation = -3307.010827 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.129 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -48.89709 -40.23328 -37.85303 -35.48291 -33.04003 -31.82188 -30.96009 -30.41633 -28.62381 -26.43527 -25.35335 -24.03911 -22.03441 -21.97992 -20.55933 -18.89504 -18.02949 -17.02210 -16.37358 -16.11746 -15.68396 -15.60881 -14.83339 -14.73599 -14.37471 -14.24921 -14.03473 -13.76410 -13.58660 -13.02232 -12.71230 -12.45810 -12.27649 -11.86327 -11.45616 -11.17758 -11.15041 -10.96115 -10.81065 -10.65396 -10.18297 -10.10031 -9.63025 -9.51441 -9.24262 -8.53888 -7.77197 -7.17197 -6.43987 -5.99763 -4.42556 1.08815 1.11147 3.18414 3.24175 3.24923 3.39476 3.81286 4.13537 4.23300 4.44522 4.56518 4.59290 4.73035 5.06071 5.12453 5.16929 5.28505 5.47242 5.54353 5.61153 5.65793 5.73668 5.79002 5.84779 5.94768 6.04864 6.08147 6.13985 6.28916 6.34287 6.55870 6.63352 7.02840 7.23651 7.28473 7.63738 7.72357 8.35277 8.56192 9.17989 9.47940 10.70194 10.95279 Molecular weight = 277.13amu Principal moments of inertia in cm(-1) A = 0.034599 B = 0.003746 C = 0.003551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.083263 B = 7473.597015 C = 7882.819333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.729 5.729 2 C 0.085 3.915 3 Si 0.896 3.104 4 H -0.282 1.282 5 H -0.270 1.270 6 H -0.270 1.270 7 C -0.484 4.484 8 H 0.072 0.928 9 C 0.485 3.515 10 N -0.793 5.793 11 N -0.670 5.670 12 C 0.132 3.868 13 C 0.043 3.957 14 N -0.485 5.485 15 C 0.115 3.885 16 C -0.148 4.148 17 C -0.124 4.124 18 C 0.057 3.943 19 F -0.147 7.147 20 C -0.126 4.126 21 C -0.117 4.117 22 C 0.039 3.961 23 C 0.127 3.873 24 H 0.261 0.739 25 H 0.265 0.735 26 H 0.047 0.953 27 H 0.096 0.904 28 H 0.047 0.953 29 H 0.080 0.920 30 H 0.137 0.863 31 H 0.132 0.868 32 H 0.134 0.866 33 H 0.135 0.865 34 H 0.048 0.952 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.187 -13.468 3.734 16.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.354 5.354 2 C -0.138 4.138 3 Si 0.721 3.279 4 H -0.207 1.207 5 H -0.195 1.195 6 H -0.195 1.195 7 C -0.524 4.524 8 H 0.090 0.910 9 C 0.230 3.770 10 N -0.432 5.432 11 N -0.399 5.399 12 C 0.005 3.995 13 C -0.083 4.083 14 N -0.199 5.199 15 C 0.016 3.984 16 C -0.169 4.169 17 C -0.144 4.144 18 C 0.037 3.963 19 F -0.126 7.126 20 C -0.146 4.146 21 C -0.138 4.138 22 C -0.089 4.089 23 C 0.001 3.999 24 H 0.072 0.928 25 H 0.079 0.921 26 H 0.065 0.935 27 H 0.114 0.886 28 H 0.066 0.934 29 H 0.098 0.902 30 H 0.155 0.845 31 H 0.150 0.850 32 H 0.152 0.848 33 H 0.153 0.847 34 H 0.066 0.934 35 H 0.099 0.901 36 H 0.099 0.901 37 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 8.381 -12.699 3.230 15.554 hybrid contribution 0.689 -0.399 0.831 1.151 sum 9.070 -13.098 4.061 16.441 Atomic orbital electron populations 1.70156 1.06705 1.26080 1.32467 1.25612 0.94542 0.99603 0.94064 0.86620 0.79996 0.81983 0.79261 1.20732 1.19525 1.19498 1.18805 0.92859 0.88386 1.52371 0.90988 1.19913 0.87255 0.82699 0.87174 1.71435 1.03271 1.25830 1.42636 1.48474 1.03645 1.04824 1.82909 1.21513 0.83718 0.98173 0.96093 1.22897 0.98389 0.87214 0.99772 1.59045 1.06378 1.05874 1.48588 1.19202 0.93360 0.95036 0.90823 1.21244 1.00765 0.98337 0.96571 1.20979 0.93484 0.99233 1.00656 1.17590 0.92326 0.91199 0.95163 1.91465 1.88074 1.61257 1.71783 1.20973 1.00019 0.96543 0.97048 1.20664 0.93868 0.98958 1.00279 1.22758 0.85851 1.00387 0.99928 1.21154 0.97593 0.84707 0.96470 0.92757 0.92083 0.93480 0.88617 0.93445 0.90176 0.84549 0.84970 0.84802 0.84685 0.93353 0.90092 0.90065 0.93202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.73 -20.73 11.52 55.55 0.64 -20.09 16 2 C 0.09 2.27 5.50 -17.35 -0.10 2.17 16 3 Si 0.90 19.40 29.56 -169.99 -5.02 14.37 16 4 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 5 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 6 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 7 C -0.48 -12.89 8.72 -37.64 -0.33 -13.22 16 8 H 0.07 1.76 5.71 -52.48 -0.30 1.46 16 9 C 0.48 12.72 7.54 -155.74 -1.17 11.55 16 10 N -0.79 -22.27 11.59 31.30 0.36 -21.91 16 11 N -0.67 -14.16 3.11 -172.10 -0.53 -14.69 16 12 C 0.13 2.33 6.53 -3.37 -0.02 2.31 16 13 C 0.04 0.64 5.44 -3.46 -0.02 0.63 16 14 N -0.48 -6.97 4.67 -170.51 -0.80 -7.76 16 15 C 0.11 1.49 5.65 -83.74 -0.47 1.02 16 16 C -0.15 -1.78 8.83 -39.39 -0.35 -2.13 16 17 C -0.12 -1.39 10.02 -39.54 -0.40 -1.79 16 18 C 0.06 0.67 7.30 -39.41 -0.29 0.39 16 19 F -0.15 -1.79 17.26 2.25 0.04 -1.75 16 20 C -0.13 -1.37 10.02 -39.54 -0.40 -1.76 16 21 C -0.12 -1.34 9.14 -39.39 -0.36 -1.70 16 22 C 0.04 0.57 4.30 -3.70 -0.02 0.56 16 23 C 0.13 2.27 6.63 -3.60 -0.02 2.25 16 24 H 0.26 6.88 8.29 -40.82 -0.34 6.54 16 25 H 0.26 6.83 6.38 -40.82 -0.26 6.57 16 26 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.10 1.76 5.55 -51.92 -0.29 1.47 16 28 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 29 H 0.08 0.98 6.66 -51.93 -0.35 0.64 16 30 H 0.14 1.51 5.81 -52.49 -0.30 1.21 16 31 H 0.13 1.23 8.06 -52.48 -0.42 0.80 16 32 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 33 H 0.14 1.36 7.15 -52.49 -0.38 0.99 16 34 H 0.05 0.76 7.81 -51.93 -0.41 0.36 16 35 H 0.08 1.02 6.90 -51.93 -0.36 0.66 16 36 H 0.08 1.53 5.71 -51.93 -0.30 1.23 16 37 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 301.14 15.07 4.54 4.54 Total: -1.00 -30.60 301.14 -8.90 -39.50 By element: Atomic # 1 Polarization: 11.72 SS G_CDS: -4.18 Total: 7.54 kcal Atomic # 6 Polarization: 4.20 SS G_CDS: -3.94 Total: 0.26 kcal Atomic # 7 Polarization: -64.13 SS G_CDS: -0.33 Total: -64.46 kcal Atomic # 9 Polarization: -1.79 SS G_CDS: 0.04 Total: -1.75 kcal Atomic # 14 Polarization: 19.40 SS G_CDS: -5.02 Total: 14.37 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -30.60 -8.90 -39.50 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004052377.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.434 kcal (2) G-P(sol) polarization free energy of solvation -30.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.499 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds