Wall clock time and date at job start Mon Mar 30 2020 02:02:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46498 * 119.99915 * 2 1 4 4 C 1.50701 * 109.46997 * 269.99460 * 3 2 1 5 5 H 1.07996 * 120.00146 * 0.02562 * 4 3 2 6 6 C 1.37881 * 119.99974 * 180.02562 * 4 3 2 7 7 N 1.31512 * 119.99804 * 359.97438 * 6 4 3 8 8 Si 1.86799 * 119.99688 * 180.02562 * 6 4 3 9 9 H 1.48493 * 109.47488 * 359.97438 * 8 6 4 10 10 H 1.48507 * 109.47011 * 120.00063 * 8 6 4 11 11 H 1.48501 * 109.46822 * 239.99162 * 8 6 4 12 12 C 1.34774 * 119.99838 * 179.97438 * 2 1 3 13 13 O 1.21279 * 120.00130 * 180.02562 * 12 2 1 14 14 C 1.50705 * 120.00324 * 359.97438 * 12 2 1 15 15 H 1.09002 * 115.55888 * 325.69665 * 14 12 2 16 16 C 1.53073 * 117.49079 * 111.39701 * 14 12 2 17 17 C 1.52998 * 117.50200 * 179.97438 * 14 12 2 18 18 H 1.09002 * 117.49737 * 0.02589 * 17 14 12 19 19 C 1.50696 * 117.49945 * 145.02585 * 17 14 12 20 20 C 1.38248 * 119.97128 * 239.91367 * 19 17 14 21 21 C 1.38196 * 120.02484 * 179.97438 * 20 19 17 22 22 C 1.38458 * 119.97492 * 359.97438 * 21 20 19 23 23 F 1.35104 * 120.02786 * 179.97438 * 22 21 20 24 24 C 1.38465 * 119.94675 * 0.24873 * 22 21 20 25 25 C 1.38196 * 119.97501 * 359.51590 * 24 22 21 26 26 H 1.09000 * 109.47054 * 270.00076 * 1 2 3 27 27 H 1.08997 * 109.46378 * 30.00289 * 1 2 3 28 28 H 1.09000 * 109.47158 * 150.00204 * 1 2 3 29 29 H 1.08993 * 109.47498 * 29.99721 * 3 2 1 30 30 H 1.09003 * 109.46905 * 150.00290 * 3 2 1 31 31 H 0.96997 * 119.99944 * 179.97438 * 7 6 4 32 32 H 1.09004 * 117.49463 * 0.02562 * 16 14 12 33 33 H 1.08998 * 117.52997 * 214.95784 * 16 14 12 34 34 H 1.08001 * 119.98900 * 359.97438 * 20 19 17 35 35 H 1.07995 * 120.01604 * 179.97438 * 21 20 19 36 36 H 1.08007 * 120.01049 * 179.72700 * 24 22 21 37 37 H 1.07993 * 119.98770 * 180.23077 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4488 1.7037 -1.4208 5 1 2.0976 1.0961 -2.2417 6 6 3.1270 2.8774 -1.6728 7 7 3.5542 3.6175 -0.6732 8 14 3.4378 3.4168 -3.4340 9 1 2.8600 2.4168 -4.3673 10 1 2.8008 4.7379 -3.6668 11 1 4.9003 3.5245 -3.6679 12 6 2.1389 -1.1672 0.0005 13 8 3.3517 -1.1673 0.0010 14 6 1.3854 -2.4724 0.0017 15 1 0.4470 -2.4731 0.5562 16 6 1.4607 -3.3328 -1.2621 17 6 2.2074 -3.7627 0.0016 18 1 3.2933 -3.6677 0.0012 19 6 1.6581 -4.9377 0.7688 20 6 2.3856 -5.4839 1.8098 21 6 1.8826 -6.5611 2.5144 22 6 0.6495 -7.0931 2.1777 23 9 0.1570 -8.1465 2.8655 24 6 -0.0761 -6.5481 1.1319 25 6 0.4266 -5.4678 0.4318 26 1 -0.3633 0.0000 1.0277 27 1 -0.3632 0.8900 -0.5139 28 1 -0.3633 -0.8900 -0.5138 29 1 1.6085 2.0284 0.5137 30 1 3.1500 1.1383 0.5138 31 1 4.0317 4.4430 -0.8504 32 1 2.0555 -2.9548 -2.0936 33 1 0.5720 -3.9000 -1.5390 34 1 3.3473 -5.0685 2.0726 35 1 2.4512 -6.9879 3.3274 36 1 -1.0362 -6.9651 0.8655 37 1 -0.1408 -5.0403 -0.3815 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000067509379.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:05 Heat of formation + Delta-G solvation = -31.323742 kcal Electronic energy + Delta-G solvation = -20417.997601 eV Core-core repulsion = 17075.560655 eV Total energy + Delta-G solvation = -3342.436946 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.122 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -49.07296 -40.06706 -38.78860 -36.17305 -34.74004 -32.59444 -31.36971 -30.34250 -28.01293 -25.94475 -24.38512 -23.92659 -22.98228 -21.90263 -20.55532 -18.36300 -17.98386 -16.97094 -16.51715 -16.30372 -15.78008 -15.62374 -15.28118 -14.81038 -14.42020 -14.24958 -13.77064 -13.60654 -13.12515 -12.96619 -12.74867 -12.28766 -12.18014 -12.04500 -11.77960 -11.58548 -11.25623 -11.13622 -10.90070 -10.69633 -10.50955 -10.36762 -10.17305 -9.62281 -9.33018 -8.99704 -8.55749 -8.45317 -7.65765 -6.05921 -4.10777 0.89325 1.01855 3.05473 3.28469 3.34942 3.37070 3.41298 3.86885 4.05292 4.13303 4.42239 4.51178 4.54919 4.65907 4.86464 4.95615 5.03189 5.11194 5.26936 5.29866 5.35475 5.59431 5.69022 5.75038 5.81375 5.91731 5.93182 5.98271 6.03645 6.15697 6.21639 6.43158 6.67688 7.04215 7.42403 7.52548 7.90581 8.21570 8.40156 8.88464 9.07463 9.54458 11.02243 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.040579 B = 0.003205 C = 0.003198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.842994 B = 8733.551364 C = 8753.259912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.598 5.598 3 C 0.244 3.756 4 C -0.526 4.526 5 H 0.058 0.942 6 C 0.060 3.940 7 N -0.895 5.895 8 Si 0.898 3.102 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.283 1.283 12 C 0.532 3.468 13 O -0.541 6.541 14 C -0.168 4.168 15 H 0.120 0.880 16 C -0.146 4.146 17 C -0.094 4.094 18 H 0.129 0.871 19 C -0.053 4.053 20 C -0.081 4.081 21 C -0.150 4.150 22 C 0.087 3.913 23 F -0.144 7.144 24 C -0.150 4.150 25 C -0.093 4.093 26 H 0.043 0.957 27 H 0.073 0.927 28 H 0.059 0.941 29 H 0.033 0.967 30 H 0.044 0.956 31 H 0.263 0.737 32 H 0.106 0.894 33 H 0.103 0.897 34 H 0.136 0.864 35 H 0.135 0.865 36 H 0.134 0.866 37 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.723 -18.670 3.511 20.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.329 5.329 3 C 0.125 3.875 4 C -0.565 4.565 5 H 0.076 0.924 6 C -0.142 4.142 7 N -0.534 5.534 8 Si 0.726 3.274 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.209 1.209 12 C 0.318 3.682 13 O -0.419 6.419 14 C -0.189 4.189 15 H 0.138 0.862 16 C -0.183 4.183 17 C -0.112 4.112 18 H 0.147 0.853 19 C -0.053 4.053 20 C -0.099 4.099 21 C -0.169 4.169 22 C 0.068 3.932 23 F -0.122 7.122 24 C -0.169 4.169 25 C -0.111 4.111 26 H 0.062 0.938 27 H 0.092 0.908 28 H 0.077 0.923 29 H 0.051 0.949 30 H 0.062 0.938 31 H 0.073 0.927 32 H 0.125 0.875 33 H 0.122 0.878 34 H 0.154 0.846 35 H 0.153 0.847 36 H 0.152 0.848 37 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -8.013 -18.490 3.587 20.469 hybrid contribution -0.068 0.287 -0.758 0.813 sum -8.080 -18.203 2.829 20.116 Atomic orbital electron populations 1.21639 0.81392 1.02617 1.00350 1.48058 1.06239 1.07583 1.71020 1.19312 0.92566 0.78011 0.97572 1.21469 1.36420 1.06281 0.92283 0.92389 1.24948 0.95369 0.96390 0.97471 1.69942 1.38395 1.14365 1.30681 0.86436 0.78090 0.78316 0.84540 1.19795 1.20949 1.20863 1.19342 0.87386 0.84055 0.77381 1.90660 1.13752 1.87035 1.50490 1.22488 1.01568 0.90823 1.04067 0.86228 1.23100 1.02602 1.01133 0.91450 1.21054 0.99724 0.91184 0.99261 0.85310 1.19283 0.94311 0.95858 0.95851 1.20930 1.00275 0.94617 0.94078 1.21140 0.95171 0.98431 1.02164 1.17738 0.94211 0.87445 0.93837 1.91489 1.87710 1.54633 1.78396 1.21103 1.01075 0.98368 0.96380 1.20967 0.95387 0.95285 0.99459 0.93833 0.90773 0.92274 0.94940 0.93825 0.92748 0.87512 0.87836 0.84588 0.84712 0.84792 0.84731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.32 10.01 59.85 0.60 1.92 16 2 N -0.60 -12.67 2.86 -182.95 -0.52 -13.19 16 3 C 0.24 6.41 5.16 -5.19 -0.03 6.38 16 4 C -0.53 -14.88 9.39 -34.44 -0.32 -15.20 16 5 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 6 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 7 N -0.89 -26.59 13.29 55.43 0.74 -25.85 16 8 Si 0.90 21.76 29.54 -169.99 -5.02 16.74 16 9 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 10 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 12 C 0.53 10.96 7.46 -10.98 -0.08 10.88 16 13 O -0.54 -13.48 15.84 5.56 0.09 -13.39 16 14 C -0.17 -2.44 4.43 -91.73 -0.41 -2.85 16 15 H 0.12 1.48 7.26 -51.93 -0.38 1.10 16 16 C -0.15 -1.78 9.56 -26.72 -0.26 -2.03 16 17 C -0.09 -1.22 5.55 -91.80 -0.51 -1.73 16 18 H 0.13 1.88 7.67 -51.93 -0.40 1.48 16 19 C -0.05 -0.59 5.61 -104.62 -0.59 -1.17 16 20 C -0.08 -0.85 9.73 -39.59 -0.39 -1.24 16 21 C -0.15 -1.48 10.03 -39.52 -0.40 -1.88 16 22 C 0.09 0.90 7.30 -39.42 -0.29 0.62 16 23 F -0.14 -1.58 17.27 2.25 0.04 -1.54 16 24 C -0.15 -1.41 10.03 -39.51 -0.40 -1.81 16 25 C -0.09 -0.89 9.29 -39.59 -0.37 -1.26 16 26 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.07 1.20 8.07 -51.93 -0.42 0.78 16 28 H 0.06 0.76 6.64 -51.93 -0.34 0.41 16 29 H 0.03 0.86 8.07 -51.93 -0.42 0.44 16 30 H 0.04 1.29 7.42 -51.93 -0.39 0.90 16 31 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 32 H 0.11 1.45 8.14 -51.93 -0.42 1.03 16 33 H 0.10 0.94 6.18 -51.93 -0.32 0.62 16 34 H 0.14 1.30 8.06 -52.49 -0.42 0.87 16 35 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 36 H 0.13 0.98 8.06 -52.48 -0.42 0.56 16 37 H 0.13 1.04 6.02 -52.49 -0.32 0.73 16 LS Contribution 323.03 15.07 4.87 4.87 Total: -1.00 -32.98 323.03 -7.97 -40.95 By element: Atomic # 1 Polarization: 3.79 SS G_CDS: -4.64 Total: -0.85 kcal Atomic # 6 Polarization: -4.22 SS G_CDS: -3.52 Total: -7.75 kcal Atomic # 7 Polarization: -39.25 SS G_CDS: 0.21 Total: -39.04 kcal Atomic # 8 Polarization: -13.48 SS G_CDS: 0.09 Total: -13.39 kcal Atomic # 9 Polarization: -1.58 SS G_CDS: 0.04 Total: -1.54 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -32.98 -7.97 -40.95 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067509379.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.631 kcal (2) G-P(sol) polarization free energy of solvation -32.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds