Wall clock time and date at job start Mon Mar 30 2020 01:56:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46497 * 109.47156 * 2 1 4 4 C 1.37092 * 120.00196 * 264.46459 * 3 2 1 5 5 H 1.08004 * 120.00364 * 146.15146 * 4 3 2 6 6 C 1.38954 * 120.00239 * 326.15315 * 4 3 2 7 7 N 1.31408 * 119.99798 * 337.76190 * 6 4 3 8 8 Si 1.86800 * 119.99988 * 157.75241 * 6 4 3 9 9 H 1.48509 * 109.46940 * 90.00904 * 8 6 4 10 10 H 1.48504 * 109.47083 * 210.00207 * 8 6 4 11 11 H 1.48496 * 109.47469 * 330.00704 * 8 6 4 12 12 C 1.34779 * 119.99832 * 84.46581 * 3 2 1 13 13 O 1.21292 * 119.99666 * 180.02562 * 12 3 2 14 14 C 1.50691 * 119.99994 * 0.02562 * 12 3 2 15 15 H 1.09005 * 115.55259 * 34.33243 * 14 12 3 16 16 C 1.53073 * 117.51579 * 248.60432 * 14 12 3 17 17 C 1.52994 * 59.98689 * 252.52602 * 16 14 12 18 18 H 1.08997 * 117.49541 * 252.49842 * 17 16 14 19 19 C 1.50700 * 117.50337 * 107.50170 * 17 16 14 20 20 C 1.38237 * 119.97525 * 171.25046 * 19 17 16 21 21 C 1.38201 * 120.02365 * 180.23114 * 20 19 17 22 22 C 1.38461 * 119.97450 * 359.51596 * 21 20 19 23 23 F 1.35098 * 120.03026 * 180.20844 * 22 21 20 24 24 C 1.38466 * 119.94785 * 0.48378 * 22 21 20 25 25 C 1.38198 * 119.97223 * 359.74596 * 24 22 21 26 26 H 1.08999 * 109.46642 * 299.99609 * 1 2 3 27 27 H 1.08999 * 109.47030 * 59.99953 * 1 2 3 28 28 H 1.08996 * 109.47068 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47005 * 240.00002 * 2 1 3 30 30 H 1.09003 * 109.47466 * 120.00657 * 2 1 3 31 31 H 0.97003 * 119.99895 * 180.02562 * 7 6 4 32 32 H 1.09003 * 117.49315 * 145.03263 * 16 14 12 33 33 H 1.09005 * 117.51225 * 0.02562 * 16 14 12 34 34 H 1.07995 * 119.98788 * 359.95853 * 20 19 17 35 35 H 1.07999 * 120.01286 * 179.72099 * 21 20 19 36 36 H 1.07992 * 120.01554 * 179.76801 * 24 22 21 37 37 H 1.08002 * 119.98543 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3548 1.9893 -1.1817 5 1 2.1874 3.0484 -1.3109 6 6 2.9112 1.2431 -2.2134 7 7 3.5134 0.1051 -1.9504 8 14 2.8031 1.8575 -3.9741 9 1 3.9878 2.6999 -4.2781 10 1 2.7690 0.6983 -4.9017 11 1 1.5668 2.6627 -4.1424 12 6 2.1368 2.0540 1.1618 13 8 2.5407 3.1977 1.1617 14 6 1.7675 1.3854 2.4608 15 1 1.9756 0.3168 2.5153 16 6 0.5282 1.9029 3.1952 17 6 1.9242 2.2020 3.7452 18 1 2.2353 1.6706 4.6446 19 6 2.4361 3.6133 3.6144 20 6 3.6063 3.9852 4.2494 21 6 4.0741 5.2805 4.1341 22 6 3.3755 6.2032 3.3739 23 9 3.8341 7.4686 3.2570 24 6 2.2035 5.8295 2.7383 25 6 1.7352 4.5349 2.8590 26 1 -0.3632 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 3.9021 -0.4157 -2.6705 32 1 -0.0791 1.1744 3.7325 33 1 -0.0203 2.7268 2.7386 34 1 4.1528 3.2645 4.8395 35 1 4.9860 5.5721 4.6339 36 1 1.6558 6.5493 2.1482 37 1 0.8208 4.2433 2.3637 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068241112.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:40 Heat of formation + Delta-G solvation = -14.460347 kcal Electronic energy + Delta-G solvation = -21685.547377 eV Core-core repulsion = 18343.841682 eV Total energy + Delta-G solvation = -3341.705694 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.122 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -48.46413 -39.79363 -37.99789 -35.90577 -34.69432 -31.99975 -30.65175 -29.68099 -29.42015 -25.70052 -23.49098 -23.05221 -22.34913 -22.14618 -20.27615 -18.41868 -17.37669 -16.88750 -16.51164 -15.63252 -15.20844 -15.12721 -14.86127 -14.29706 -14.09579 -13.75826 -13.37719 -13.12594 -12.83575 -12.70842 -12.49041 -12.17668 -11.94275 -11.76837 -11.48679 -11.15274 -11.04652 -10.93545 -10.57951 -10.48612 -10.38237 -10.23554 -9.99088 -9.90365 -8.95677 -8.72857 -8.33827 -7.56756 -7.41127 -6.35141 -3.94964 1.63501 1.82814 3.14340 3.24440 3.29581 3.54017 4.11880 4.13258 4.44995 4.70441 4.75885 4.97523 5.03985 5.17951 5.29109 5.35231 5.39914 5.45852 5.70700 5.80217 5.88951 5.91381 6.02393 6.14188 6.24714 6.27823 6.37130 6.43160 6.51924 6.54569 6.61389 6.77361 6.88448 7.06997 7.27088 7.41644 7.57813 8.23340 8.50545 9.18647 9.41700 10.03026 10.68351 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.018117 B = 0.005979 C = 0.004915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1545.117970 B = 4681.937699 C = 5695.563918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.096 3.904 3 N -0.433 5.433 4 C -0.305 4.305 5 H 0.092 0.908 6 C 0.036 3.964 7 N -0.869 5.869 8 Si 0.915 3.085 9 H -0.277 1.277 10 H -0.282 1.282 11 H -0.270 1.270 12 C 0.477 3.523 13 O -0.564 6.564 14 C -0.159 4.159 15 H 0.116 0.884 16 C -0.158 4.158 17 C -0.095 4.095 18 H 0.113 0.887 19 C -0.042 4.042 20 C -0.089 4.089 21 C -0.169 4.169 22 C 0.088 3.912 23 F -0.152 7.152 24 C -0.163 4.163 25 C -0.007 4.007 26 H 0.044 0.956 27 H 0.054 0.946 28 H 0.048 0.952 29 H 0.111 0.889 30 H 0.047 0.953 31 H 0.267 0.733 32 H 0.099 0.901 33 H 0.098 0.902 34 H 0.122 0.878 35 H 0.124 0.876 36 H 0.124 0.876 37 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.056 1.002 10.127 11.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.028 4.028 3 N -0.151 5.151 4 C -0.433 4.433 5 H 0.109 0.891 6 C -0.168 4.168 7 N -0.507 5.507 8 Si 0.742 3.258 9 H -0.203 1.203 10 H -0.208 1.208 11 H -0.194 1.194 12 C 0.265 3.735 13 O -0.448 6.448 14 C -0.180 4.180 15 H 0.134 0.866 16 C -0.195 4.195 17 C -0.114 4.114 18 H 0.131 0.869 19 C -0.042 4.042 20 C -0.107 4.107 21 C -0.188 4.188 22 C 0.069 3.931 23 F -0.130 7.130 24 C -0.182 4.182 25 C -0.025 4.025 26 H 0.064 0.936 27 H 0.073 0.927 28 H 0.067 0.933 29 H 0.129 0.871 30 H 0.065 0.935 31 H 0.078 0.922 32 H 0.117 0.883 33 H 0.117 0.883 34 H 0.140 0.860 35 H 0.142 0.858 36 H 0.142 0.858 37 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -4.735 1.445 9.961 11.123 hybrid contribution 0.226 0.082 -1.109 1.135 sum -4.509 1.527 8.852 10.051 Atomic orbital electron populations 1.22188 0.98167 1.00221 1.01538 1.21587 0.91756 0.85591 1.03891 1.43497 1.54993 1.11760 1.04803 1.19426 1.39496 0.95436 0.88947 0.89054 1.25313 0.94552 0.96473 1.00492 1.69923 1.32536 1.15240 1.32984 0.86120 0.79063 0.78372 0.82286 1.20307 1.20791 1.19427 1.19395 0.82717 0.87646 0.83700 1.90563 1.50343 1.18125 1.85727 1.22478 1.03033 0.99608 0.92886 0.86602 1.23056 0.90242 1.03316 1.02915 1.20979 0.99602 0.93752 0.97017 0.86898 1.18846 0.94956 0.93107 0.97298 1.20567 0.95431 0.94933 0.99786 1.20811 1.01262 0.93862 1.02828 1.17630 0.95326 0.79232 1.00927 1.91429 1.88833 1.37856 1.94921 1.20881 0.96703 0.97951 1.02653 1.20549 0.98883 0.90718 0.92367 0.93640 0.92657 0.93292 0.87097 0.93482 0.92241 0.88251 0.88348 0.85996 0.85781 0.85785 0.86057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.84 10.16 37.16 0.38 -2.47 16 2 C 0.10 2.03 5.43 -4.04 -0.02 2.00 16 3 N -0.43 -10.59 2.56 -114.82 -0.29 -10.89 16 4 C -0.31 -8.30 8.98 -14.93 -0.13 -8.43 16 5 H 0.09 2.61 7.70 -52.48 -0.40 2.21 16 6 C 0.04 0.93 4.92 -17.47 -0.09 0.84 16 7 N -0.87 -23.17 11.33 55.50 0.63 -22.54 16 8 Si 0.92 20.50 29.61 -169.99 -5.03 15.46 16 9 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 10 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 11 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 12 C 0.48 11.02 7.23 -10.99 -0.08 10.94 16 13 O -0.56 -14.43 11.52 5.55 0.06 -14.37 16 14 C -0.16 -2.78 4.81 -91.74 -0.44 -3.22 16 15 H 0.12 1.88 6.52 -51.93 -0.34 1.55 16 16 C -0.16 -2.22 9.30 -26.70 -0.25 -2.47 16 17 C -0.09 -1.44 6.04 -91.77 -0.55 -2.00 16 18 H 0.11 1.40 8.14 -51.93 -0.42 0.98 16 19 C -0.04 -0.72 4.37 -104.62 -0.46 -1.17 16 20 C -0.09 -1.43 9.73 -39.60 -0.39 -1.81 16 21 C -0.17 -2.73 10.03 -39.51 -0.40 -3.13 16 22 C 0.09 1.54 7.30 -39.42 -0.29 1.26 16 23 F -0.15 -2.63 17.27 2.25 0.04 -2.59 16 24 C -0.16 -2.89 10.03 -39.51 -0.40 -3.29 16 25 C -0.01 -0.13 6.16 -39.59 -0.24 -0.37 16 26 H 0.04 0.73 7.39 -51.93 -0.38 0.35 16 27 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 28 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.11 2.62 5.35 -51.93 -0.28 2.35 16 30 H 0.05 0.91 6.25 -51.93 -0.32 0.58 16 31 H 0.27 6.73 8.31 -40.82 -0.34 6.39 16 32 H 0.10 1.11 8.14 -51.93 -0.42 0.68 16 33 H 0.10 1.44 6.18 -51.93 -0.32 1.12 16 34 H 0.12 1.63 8.06 -52.49 -0.42 1.20 16 35 H 0.12 1.70 8.06 -52.49 -0.42 1.28 16 36 H 0.12 2.00 8.06 -52.49 -0.42 1.58 16 37 H 0.12 2.16 5.77 -52.49 -0.30 1.86 16 LS Contribution 308.30 15.07 4.65 4.65 Total: -1.00 -30.02 308.30 -7.75 -37.78 By element: Atomic # 1 Polarization: 10.25 SS G_CDS: -4.45 Total: 5.80 kcal Atomic # 6 Polarization: -9.95 SS G_CDS: -3.35 Total: -13.31 kcal Atomic # 7 Polarization: -33.76 SS G_CDS: 0.34 Total: -33.42 kcal Atomic # 8 Polarization: -14.43 SS G_CDS: 0.06 Total: -14.37 kcal Atomic # 9 Polarization: -2.63 SS G_CDS: 0.04 Total: -2.59 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.03 Total: 15.46 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -30.02 -7.75 -37.78 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068241112.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.315 kcal (2) G-P(sol) polarization free energy of solvation -30.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds