Wall clock time and date at job start Mon Mar 30 2020 01:44:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 115.57028 * 2 1 4 4 C 1.53011 * 117.49445 * 214.31071 * 2 1 3 5 5 C 1.52999 * 59.99907 * 252.51324 * 4 2 1 6 6 H 1.09010 * 117.49760 * 252.49134 * 5 4 2 7 7 C 1.50698 * 117.49916 * 107.49293 * 5 4 2 8 8 O 1.21285 * 119.99746 * 291.38892 * 7 5 4 9 9 N 1.34770 * 120.00197 * 111.39054 * 7 5 4 10 10 C 1.46501 * 120.00038 * 5.66525 * 9 7 5 11 11 C 1.50707 * 109.47405 * 270.00409 * 10 9 7 12 12 H 1.07998 * 119.99265 * 359.97438 * 11 10 9 13 13 C 1.37873 * 120.00198 * 180.02562 * 11 10 9 14 14 N 1.31517 * 120.00052 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 120.00086 * 179.97438 * 13 11 10 16 16 H 1.48499 * 109.47055 * 0.02562 * 15 13 11 17 17 H 1.48509 * 109.47081 * 119.99631 * 15 13 11 18 18 H 1.48498 * 109.47431 * 239.99835 * 15 13 11 19 19 C 1.40033 * 120.00373 * 185.67091 * 9 7 5 20 20 C 1.38849 * 120.04273 * 236.92126 * 19 9 7 21 21 C 1.38115 * 119.95131 * 179.97438 * 20 19 9 22 22 C 1.38470 * 120.04597 * 359.97438 * 21 20 19 23 23 F 1.35107 * 119.95209 * 179.97438 * 22 21 20 24 24 C 1.38472 * 120.09230 * 0.02562 * 22 21 20 25 25 C 1.38107 * 120.04419 * 0.02562 * 24 22 21 26 26 H 1.08998 * 109.47013 * 274.31052 * 1 2 3 27 27 H 1.09004 * 109.46973 * 34.30769 * 1 2 3 28 28 H 1.08999 * 109.47427 * 154.30822 * 1 2 3 29 29 H 1.09007 * 117.49369 * 145.02080 * 4 2 1 30 30 H 1.08991 * 117.51526 * 359.97438 * 4 2 1 31 31 H 1.08999 * 109.47560 * 30.00121 * 10 9 7 32 32 H 1.08996 * 109.47288 * 150.00396 * 10 9 7 33 33 H 0.97000 * 120.00396 * 179.97438 * 14 13 11 34 34 H 1.07997 * 120.02874 * 0.02562 * 20 19 9 35 35 H 1.08003 * 119.97184 * 180.25847 * 21 20 19 36 36 H 1.07999 * 119.98048 * 179.97438 * 24 22 21 37 37 H 1.08002 * 120.02477 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0004 0.9832 0.0000 4 6 2.2363 -1.1211 -0.7651 5 6 2.2363 -1.1211 0.7649 6 1 3.1716 -0.8757 1.2682 7 6 1.3719 -2.1407 1.4607 8 8 0.1637 -2.0534 1.4009 9 7 1.9413 -3.1495 2.1495 10 6 3.3951 -3.1865 2.3267 11 6 4.0211 -3.9473 1.1862 12 1 3.3981 -4.3621 0.4076 13 6 5.3887 -4.1146 1.1374 14 7 6.1472 -3.6099 2.0859 15 14 6.1645 -5.0583 -0.2758 16 1 5.1021 -5.5199 -1.2050 17 1 7.1076 -4.1720 -1.0042 18 1 6.9005 -6.2324 0.2579 19 6 1.1435 -4.1624 2.6957 20 6 1.1930 -4.4280 4.0576 21 6 0.4049 -5.4271 4.5944 22 6 -0.4346 -6.1634 3.7755 23 9 -1.2043 -7.1407 4.3025 24 6 -0.4854 -5.9001 2.4170 25 6 0.3018 -4.9026 1.8760 26 1 -0.3633 0.0772 1.0247 27 1 -0.3633 0.8489 -0.5793 28 1 -0.3634 -0.9260 -0.4455 29 1 3.1715 -0.8752 -1.2684 30 1 1.6113 -1.8589 -1.2680 31 1 3.7854 -2.1689 2.3420 32 1 3.6339 -3.6814 3.2679 33 1 7.1094 -3.7279 2.0519 34 1 1.8466 -3.8532 4.6969 35 1 0.4400 -5.6312 5.6544 36 1 -1.1404 -6.4757 1.7798 37 1 0.2616 -4.6973 0.8165 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072678591.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:35 Heat of formation + Delta-G solvation = -28.251665 kcal Electronic energy + Delta-G solvation = -21484.092765 eV Core-core repulsion = 18141.789034 eV Total energy + Delta-G solvation = -3342.303731 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.122 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -48.60718 -40.16419 -38.37913 -36.11812 -34.99777 -32.66642 -30.86191 -29.51297 -28.14541 -27.05572 -24.22122 -23.41222 -22.43160 -21.59035 -20.50977 -18.40768 -17.43793 -16.99693 -16.72756 -16.04062 -15.84376 -15.29893 -14.82068 -14.36061 -14.19878 -13.96717 -13.56566 -13.26387 -12.97191 -12.64269 -12.43946 -12.32719 -12.14011 -11.94750 -11.89713 -11.44147 -11.11428 -11.10003 -10.86204 -10.79799 -10.27451 -9.93585 -9.78134 -9.62108 -9.07421 -8.79472 -8.71777 -8.61829 -7.55792 -6.25007 -4.31687 1.44332 1.55802 3.05054 3.17810 3.26918 3.30638 3.59026 3.93361 4.27637 4.30249 4.56046 5.00967 5.06289 5.09262 5.10882 5.17539 5.34286 5.56063 5.61700 5.66737 5.70009 5.88680 6.12435 6.17173 6.18679 6.21755 6.38455 6.40254 6.42452 6.47026 6.67111 6.73873 6.80934 7.04763 7.09783 7.52137 7.69619 7.94822 8.07753 8.69866 8.85353 9.35566 10.82101 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.011331 B = 0.007669 C = 0.005173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2470.517372 B = 3650.096965 C = 5411.289108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.136 4.136 3 H 0.105 0.895 4 C -0.139 4.139 5 C -0.169 4.169 6 H 0.129 0.871 7 C 0.551 3.449 8 O -0.551 6.551 9 N -0.556 5.556 10 C 0.238 3.762 11 C -0.532 4.532 12 H 0.062 0.938 13 C 0.066 3.934 14 N -0.892 5.892 15 Si 0.896 3.104 16 H -0.272 1.272 17 H -0.282 1.282 18 H -0.282 1.282 19 C 0.173 3.827 20 C -0.103 4.103 21 C -0.140 4.140 22 C 0.073 3.927 23 F -0.148 7.148 24 C -0.141 4.141 25 C -0.085 4.085 26 H 0.064 0.936 27 H 0.041 0.959 28 H 0.061 0.939 29 H 0.101 0.899 30 H 0.093 0.907 31 H 0.045 0.955 32 H 0.040 0.960 33 H 0.265 0.735 34 H 0.134 0.866 35 H 0.133 0.867 36 H 0.132 0.868 37 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.899 1.905 -0.100 8.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.154 4.154 3 H 0.123 0.877 4 C -0.176 4.176 5 C -0.190 4.190 6 H 0.147 0.853 7 C 0.341 3.659 8 O -0.430 6.430 9 N -0.281 5.281 10 C 0.120 3.880 11 C -0.570 4.570 12 H 0.080 0.920 13 C -0.137 4.137 14 N -0.530 5.530 15 Si 0.724 3.276 16 H -0.196 1.196 17 H -0.208 1.208 18 H -0.208 1.208 19 C 0.080 3.920 20 C -0.123 4.123 21 C -0.159 4.159 22 C 0.053 3.947 23 F -0.127 7.127 24 C -0.160 4.160 25 C -0.105 4.105 26 H 0.083 0.917 27 H 0.060 0.940 28 H 0.080 0.920 29 H 0.119 0.881 30 H 0.112 0.888 31 H 0.062 0.938 32 H 0.058 0.942 33 H 0.075 0.925 34 H 0.152 0.848 35 H 0.151 0.849 36 H 0.150 0.850 37 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -8.317 1.967 -0.061 8.547 hybrid contribution 0.840 -0.861 -0.567 1.329 sum -7.477 1.107 -0.628 7.585 Atomic orbital electron populations 1.21307 0.92012 1.00812 1.02138 1.22398 0.96124 0.93654 1.03245 0.87670 1.22915 1.02402 1.00698 0.91610 1.22165 1.01649 0.99285 0.95899 0.85312 1.19705 0.87449 0.81223 0.77496 1.90636 1.14730 1.75708 1.61926 1.46010 1.09756 1.21008 1.51348 1.19638 0.71380 0.98789 0.98239 1.21418 0.91931 1.35220 1.08461 0.91978 1.24902 0.96979 0.95516 0.96291 1.69919 1.05398 1.44862 1.32825 0.86456 0.79325 0.79712 0.82120 1.19621 1.20773 1.20831 1.17670 0.92804 0.90220 0.91262 1.20996 0.99299 0.98096 0.93890 1.20872 0.97725 0.97250 1.00085 1.17595 0.94762 0.90118 0.92217 1.91450 1.73703 1.60477 1.87032 1.20893 1.01795 0.99982 0.93331 1.20975 0.95974 0.93518 1.00015 0.91699 0.93993 0.91977 0.88075 0.88820 0.93762 0.94241 0.92502 0.84822 0.84873 0.85017 0.85341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.58 8.43 37.16 0.31 -1.26 16 2 C -0.14 -2.02 6.41 -90.61 -0.58 -2.60 16 3 H 0.11 1.35 8.14 -51.93 -0.42 0.92 16 4 C -0.14 -2.20 9.88 -26.73 -0.26 -2.46 16 5 C -0.17 -3.01 5.35 -91.77 -0.49 -3.50 16 6 H 0.13 2.35 6.40 -51.92 -0.33 2.02 16 7 C 0.55 11.03 7.22 -10.99 -0.08 10.95 16 8 O -0.55 -11.51 12.49 5.55 0.07 -11.44 16 9 N -0.56 -11.50 2.56 -114.72 -0.29 -11.79 16 10 C 0.24 5.44 4.84 -5.19 -0.03 5.42 16 11 C -0.53 -13.38 9.38 -34.44 -0.32 -13.70 16 12 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 13 C 0.07 1.70 5.46 -17.82 -0.10 1.60 16 14 N -0.89 -23.86 13.29 55.43 0.74 -23.13 16 15 Si 0.90 20.18 29.54 -169.99 -5.02 15.16 16 16 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 17 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 18 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 19 C 0.17 3.37 5.16 -83.66 -0.43 2.94 16 20 C -0.10 -1.78 9.32 -39.40 -0.37 -2.15 16 21 C -0.14 -2.17 10.02 -39.54 -0.40 -2.56 16 22 C 0.07 1.16 7.30 -39.41 -0.29 0.87 16 23 F -0.15 -2.28 17.27 2.25 0.04 -2.24 16 24 C -0.14 -2.25 10.02 -39.54 -0.40 -2.64 16 25 C -0.08 -1.55 8.96 -39.40 -0.35 -1.90 16 26 H 0.06 1.05 7.26 -51.93 -0.38 0.68 16 27 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.06 1.01 7.01 -51.93 -0.36 0.65 16 29 H 0.10 1.47 8.14 -51.92 -0.42 1.05 16 30 H 0.09 1.51 8.05 -51.93 -0.42 1.09 16 31 H 0.04 1.03 6.11 -51.93 -0.32 0.71 16 32 H 0.04 0.95 7.36 -51.93 -0.38 0.57 16 33 H 0.27 6.77 8.31 -40.82 -0.34 6.43 16 34 H 0.13 2.17 7.83 -52.49 -0.41 1.76 16 35 H 0.13 1.69 8.06 -52.48 -0.42 1.27 16 36 H 0.13 1.77 8.06 -52.49 -0.42 1.34 16 37 H 0.13 2.34 8.05 -52.49 -0.42 1.92 16 LS Contribution 318.94 15.07 4.81 4.81 Total: -1.00 -27.37 318.94 -8.13 -35.50 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: -4.68 Total: 4.14 kcal Atomic # 6 Polarization: -7.23 SS G_CDS: -3.78 Total: -11.01 kcal Atomic # 7 Polarization: -35.36 SS G_CDS: 0.44 Total: -34.92 kcal Atomic # 8 Polarization: -11.51 SS G_CDS: 0.07 Total: -11.44 kcal Atomic # 9 Polarization: -2.28 SS G_CDS: 0.04 Total: -2.24 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.02 Total: 15.16 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -27.37 -8.13 -35.50 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072678591.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.249 kcal (2) G-P(sol) polarization free energy of solvation -27.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds