Wall clock time and date at job start Mon Mar 30 2020 01:44:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 115.57028 * 2 1 4 4 C 1.53011 * 117.49445 * 214.31071 * 2 1 3 5 5 C 1.52999 * 59.99907 * 252.51324 * 4 2 1 6 6 H 1.09010 * 117.49760 * 252.49134 * 5 4 2 7 7 C 1.50698 * 117.49916 * 107.49293 * 5 4 2 8 8 O 1.21285 * 119.99746 * 291.38892 * 7 5 4 9 9 N 1.34770 * 120.00197 * 111.39054 * 7 5 4 10 10 C 1.46501 * 120.00038 * 5.66525 * 9 7 5 11 11 C 1.50707 * 109.47405 * 270.00409 * 10 9 7 12 12 H 1.07998 * 119.99265 * 359.97438 * 11 10 9 13 13 C 1.37873 * 120.00198 * 180.02562 * 11 10 9 14 14 N 1.31517 * 120.00052 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 120.00086 * 179.97438 * 13 11 10 16 16 H 1.48499 * 109.47055 * 0.02562 * 15 13 11 17 17 H 1.48509 * 109.47081 * 119.99631 * 15 13 11 18 18 H 1.48498 * 109.47431 * 239.99835 * 15 13 11 19 19 C 1.40033 * 120.00373 * 185.67091 * 9 7 5 20 20 C 1.38849 * 120.04273 * 236.92126 * 19 9 7 21 21 C 1.38115 * 119.95131 * 179.97438 * 20 19 9 22 22 C 1.38470 * 120.04597 * 359.97438 * 21 20 19 23 23 F 1.35107 * 119.95209 * 179.97438 * 22 21 20 24 24 C 1.38472 * 120.09230 * 0.02562 * 22 21 20 25 25 C 1.38107 * 120.04419 * 0.02562 * 24 22 21 26 26 H 1.08998 * 109.47013 * 274.31052 * 1 2 3 27 27 H 1.09004 * 109.46973 * 34.30769 * 1 2 3 28 28 H 1.08999 * 109.47427 * 154.30822 * 1 2 3 29 29 H 1.09007 * 117.49369 * 145.02080 * 4 2 1 30 30 H 1.08991 * 117.51526 * 359.97438 * 4 2 1 31 31 H 1.08999 * 109.47560 * 30.00121 * 10 9 7 32 32 H 1.08996 * 109.47288 * 150.00396 * 10 9 7 33 33 H 0.97000 * 120.00396 * 179.97438 * 14 13 11 34 34 H 1.07997 * 120.02874 * 0.02562 * 20 19 9 35 35 H 1.08003 * 119.97184 * 180.25847 * 21 20 19 36 36 H 1.07999 * 119.98048 * 179.97438 * 24 22 21 37 37 H 1.08002 * 120.02477 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0004 0.9832 0.0000 4 6 2.2363 -1.1211 -0.7651 5 6 2.2363 -1.1211 0.7649 6 1 3.1716 -0.8757 1.2682 7 6 1.3719 -2.1407 1.4607 8 8 0.1637 -2.0534 1.4009 9 7 1.9413 -3.1495 2.1495 10 6 3.3951 -3.1865 2.3267 11 6 4.0211 -3.9473 1.1862 12 1 3.3981 -4.3621 0.4076 13 6 5.3887 -4.1146 1.1374 14 7 6.1472 -3.6099 2.0859 15 14 6.1645 -5.0583 -0.2758 16 1 5.1021 -5.5199 -1.2050 17 1 7.1076 -4.1720 -1.0042 18 1 6.9005 -6.2324 0.2579 19 6 1.1435 -4.1624 2.6957 20 6 1.1930 -4.4280 4.0576 21 6 0.4049 -5.4271 4.5944 22 6 -0.4346 -6.1634 3.7755 23 9 -1.2043 -7.1407 4.3025 24 6 -0.4854 -5.9001 2.4170 25 6 0.3018 -4.9026 1.8760 26 1 -0.3633 0.0772 1.0247 27 1 -0.3633 0.8489 -0.5793 28 1 -0.3634 -0.9260 -0.4455 29 1 3.1715 -0.8752 -1.2684 30 1 1.6113 -1.8589 -1.2680 31 1 3.7854 -2.1689 2.3420 32 1 3.6339 -3.6814 3.2679 33 1 7.1094 -3.7279 2.0519 34 1 1.8466 -3.8532 4.6969 35 1 0.4400 -5.6312 5.6544 36 1 -1.1404 -6.4757 1.7798 37 1 0.2616 -4.6973 0.8165 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072678591.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:34 Heat of formation + Delta-G solvation = -40.200184 kcal Electronic energy + Delta-G solvation = -21484.610891 eV Core-core repulsion = 18141.789034 eV Total energy + Delta-G solvation = -3342.821857 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.122 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.86910 -41.65424 -39.73734 -37.48777 -36.63812 -34.56375 -32.18569 -30.96641 -29.51842 -28.75834 -25.64888 -25.13501 -23.88166 -22.94955 -21.77144 -19.88099 -18.83719 -18.63779 -18.36127 -17.61578 -17.27174 -16.55896 -16.45560 -15.87121 -15.57208 -15.46239 -14.98050 -14.56828 -14.42345 -14.20115 -13.85223 -13.74238 -13.60208 -13.51451 -13.24910 -13.05993 -12.84696 -12.60999 -12.32150 -12.18695 -12.10590 -11.74661 -11.08436 -10.97665 -10.66511 -10.50195 -10.23810 -10.11259 -9.08391 -8.20918 -6.34393 0.07421 0.23509 1.39246 1.42905 1.51763 1.56727 2.08647 2.40608 2.58001 2.95972 3.09936 3.25246 3.64768 3.77323 3.84244 3.89070 4.04831 4.22493 4.24733 4.37955 4.45774 4.50020 4.84351 4.87410 4.90642 4.98510 5.01915 5.07187 5.09009 5.13196 5.17089 5.21003 5.39982 5.58334 5.63195 5.71279 6.01264 6.02965 6.43475 6.75900 7.24661 7.37743 8.84753 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.011331 B = 0.007669 C = 0.005173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2470.517372 B = 3650.096965 C = 5411.289108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.113 4.113 3 H 0.135 0.865 4 C -0.136 4.136 5 C -0.197 4.197 6 H 0.120 0.880 7 C 0.545 3.455 8 O -0.565 6.565 9 N -0.559 5.559 10 C 0.254 3.746 11 C -0.536 4.536 12 H 0.051 0.949 13 C 0.025 3.975 14 N -0.919 5.919 15 Si 0.953 3.047 16 H -0.272 1.272 17 H -0.274 1.274 18 H -0.282 1.282 19 C 0.138 3.862 20 C -0.112 4.112 21 C -0.130 4.130 22 C 0.074 3.926 23 F -0.141 7.141 24 C -0.135 4.135 25 C -0.100 4.100 26 H 0.048 0.952 27 H 0.072 0.928 28 H 0.043 0.957 29 H 0.116 0.884 30 H 0.086 0.914 31 H 0.038 0.962 32 H 0.024 0.976 33 H 0.268 0.732 34 H 0.139 0.861 35 H 0.165 0.835 36 H 0.158 0.842 37 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.325 1.775 -0.561 8.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.131 4.131 3 H 0.153 0.847 4 C -0.173 4.173 5 C -0.218 4.218 6 H 0.138 0.862 7 C 0.337 3.663 8 O -0.445 6.445 9 N -0.285 5.285 10 C 0.135 3.865 11 C -0.574 4.574 12 H 0.069 0.931 13 C -0.176 4.176 14 N -0.559 5.559 15 Si 0.779 3.221 16 H -0.196 1.196 17 H -0.200 1.200 18 H -0.207 1.207 19 C 0.046 3.954 20 C -0.132 4.132 21 C -0.149 4.149 22 C 0.054 3.946 23 F -0.120 7.120 24 C -0.154 4.154 25 C -0.119 4.119 26 H 0.067 0.933 27 H 0.091 0.909 28 H 0.062 0.938 29 H 0.134 0.866 30 H 0.105 0.895 31 H 0.055 0.945 32 H 0.042 0.958 33 H 0.077 0.923 34 H 0.156 0.844 35 H 0.182 0.818 36 H 0.176 0.824 37 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -8.760 1.833 -0.520 8.965 hybrid contribution 0.885 -0.857 -0.373 1.287 sum -7.875 0.976 -0.893 7.985 Atomic orbital electron populations 1.21256 0.91971 1.01188 1.01464 1.22571 0.96072 0.94115 1.00336 0.84744 1.23000 1.03177 1.01047 0.90069 1.22183 1.01798 1.00866 0.96955 0.86185 1.20108 0.87613 0.81324 0.77262 1.90614 1.15266 1.76113 1.62482 1.45933 1.08924 1.21732 1.51881 1.19258 0.72827 0.97724 0.96720 1.21549 0.92101 1.35142 1.08638 0.93117 1.25559 0.97414 0.96278 0.98301 1.69999 1.05683 1.45931 1.34237 0.85575 0.78434 0.78552 0.79557 1.19606 1.19977 1.20746 1.18054 0.93905 0.90916 0.92491 1.21135 0.99942 0.98885 0.93244 1.21161 0.96296 0.95844 1.01610 1.17673 0.94611 0.90053 0.92251 1.91472 1.73468 1.60142 1.86896 1.21118 1.01210 0.99131 0.93917 1.20984 0.96822 0.94486 0.99653 0.93279 0.90911 0.93819 0.86579 0.89514 0.94462 0.95804 0.92305 0.84358 0.81785 0.82420 0.86221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.91 8.43 71.98 0.61 -2.30 16 2 C -0.11 -3.18 6.41 -10.79 -0.07 -3.25 16 3 H 0.13 3.04 8.14 -2.39 -0.02 3.02 16 4 C -0.14 -4.19 9.88 30.60 0.30 -3.88 16 5 C -0.20 -7.05 5.35 -11.54 -0.06 -7.11 16 6 H 0.12 4.47 6.40 -2.38 -0.02 4.45 16 7 C 0.55 22.35 7.22 87.66 0.63 22.98 16 8 O -0.56 -24.06 12.49 -3.04 -0.04 -24.10 16 9 N -0.56 -23.80 2.56 -635.24 -1.63 -25.43 16 10 C 0.25 11.97 4.84 85.64 0.41 12.39 16 11 C -0.54 -27.36 9.38 25.60 0.24 -27.12 16 12 H 0.05 2.66 7.81 -2.91 -0.02 2.64 16 13 C 0.02 1.28 5.46 84.65 0.46 1.74 16 14 N -0.92 -49.45 13.29 21.45 0.28 -49.17 16 15 Si 0.95 41.19 29.54 68.60 2.03 43.22 16 16 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 17 H -0.27 -11.47 7.11 99.48 0.71 -10.77 16 18 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 19 C 0.14 5.48 5.16 38.12 0.20 5.68 16 20 C -0.11 -3.88 9.32 22.39 0.21 -3.67 16 21 C -0.13 -3.81 10.02 22.30 0.22 -3.58 16 22 C 0.07 2.20 7.30 22.38 0.16 2.37 16 23 F -0.14 -3.99 17.27 44.97 0.78 -3.21 16 24 C -0.13 -4.14 10.02 22.29 0.22 -3.91 16 25 C -0.10 -3.65 8.96 22.39 0.20 -3.45 16 26 H 0.05 1.56 7.26 -2.39 -0.02 1.55 16 27 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 28 H 0.04 1.40 7.01 -2.39 -0.02 1.38 16 29 H 0.12 3.21 8.14 -2.38 -0.02 3.19 16 30 H 0.09 2.79 8.05 -2.39 -0.02 2.77 16 31 H 0.04 1.80 6.11 -2.39 -0.01 1.79 16 32 H 0.02 1.19 7.36 -2.39 -0.02 1.17 16 33 H 0.27 13.65 8.31 -92.71 -0.77 12.88 16 34 H 0.14 4.53 7.83 -2.91 -0.02 4.51 16 35 H 0.16 3.71 8.06 -2.91 -0.02 3.69 16 36 H 0.16 3.91 8.06 -2.91 -0.02 3.89 16 37 H 0.12 4.49 8.05 -2.91 -0.02 4.47 16 Total: -1.00 -58.15 318.94 6.24 -51.91 By element: Atomic # 1 Polarization: 18.85 SS G_CDS: 1.08 Total: 19.93 kcal Atomic # 6 Polarization: -16.89 SS G_CDS: 3.74 Total: -13.14 kcal Atomic # 7 Polarization: -73.25 SS G_CDS: -1.34 Total: -74.60 kcal Atomic # 8 Polarization: -24.06 SS G_CDS: -0.04 Total: -24.10 kcal Atomic # 9 Polarization: -3.99 SS G_CDS: 0.78 Total: -3.21 kcal Atomic # 14 Polarization: 41.19 SS G_CDS: 2.03 Total: 43.22 kcal Total: -58.15 6.24 -51.91 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072678591.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.706 kcal (2) G-P(sol) polarization free energy of solvation -58.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds