Wall clock time and date at job start Mon Mar 30 2020 01:44:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 115.55092 * 2 1 4 4 C 1.53003 * 117.49660 * 214.32202 * 2 1 3 5 5 C 1.53008 * 117.49458 * 145.66537 * 2 1 3 6 6 H 1.08997 * 117.50055 * 0.02562 * 5 2 1 7 7 C 1.50697 * 117.49534 * 215.00235 * 5 2 1 8 8 O 1.21286 * 120.00409 * 0.02562 * 7 5 2 9 9 N 1.34782 * 119.99731 * 180.02562 * 7 5 2 10 10 C 1.46496 * 120.00010 * 354.33748 * 9 7 5 11 11 C 1.50697 * 109.47416 * 89.99620 * 10 9 7 12 12 H 1.07996 * 120.00132 * 0.02562 * 11 10 9 13 13 C 1.37876 * 120.00217 * 179.97438 * 11 10 9 14 14 N 1.31514 * 119.99950 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 120.00106 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47288 * 60.00138 * 15 13 11 17 17 H 1.48499 * 109.47299 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.47057 * 299.99999 * 15 13 11 19 19 C 1.40028 * 120.00154 * 174.33675 * 9 7 5 20 20 C 1.38855 * 120.04292 * 302.82670 * 19 9 7 21 21 C 1.38108 * 119.95016 * 179.71796 * 20 19 9 22 22 C 1.38475 * 120.04754 * 0.57654 * 21 20 19 23 23 F 1.35103 * 119.95138 * 179.69876 * 22 21 20 24 24 C 1.38472 * 120.09175 * 359.68037 * 22 21 20 25 25 C 1.38116 * 120.03949 * 0.03560 * 24 22 21 26 26 H 1.09003 * 109.46826 * 154.41755 * 1 2 3 27 27 H 1.08991 * 109.47379 * 274.42187 * 1 2 3 28 28 H 1.08998 * 109.46638 * 34.42161 * 1 2 3 29 29 H 1.09001 * 117.49817 * 359.97438 * 4 2 1 30 30 H 1.09007 * 117.49641 * 144.97754 * 4 2 1 31 31 H 1.09003 * 109.47471 * 210.00088 * 10 9 7 32 32 H 1.09005 * 109.47378 * 329.99724 * 10 9 7 33 33 H 0.97001 * 120.00011 * 180.02562 * 14 13 11 34 34 H 1.08000 * 120.02319 * 359.97438 * 20 19 9 35 35 H 1.08004 * 119.97529 * 180.27765 * 21 20 19 36 36 H 1.07993 * 119.97829 * 180.02562 * 24 22 21 37 37 H 1.08005 * 120.01783 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0002 0.9834 0.0000 4 6 2.2365 -1.1209 -0.7652 5 6 2.2364 -1.1208 0.7655 6 1 1.6112 -1.8582 1.2687 7 6 3.5289 -0.7805 1.4617 8 8 3.9711 0.3474 1.4023 9 7 4.1936 -1.7295 2.1503 10 6 3.6002 -3.0573 2.3268 11 6 4.0171 -3.9495 1.1862 12 1 4.6601 -3.5661 0.4078 13 6 3.5785 -5.2557 1.1368 14 7 2.7959 -5.7228 2.0849 15 14 4.0958 -6.3620 -0.2767 16 1 5.5760 -6.4796 -0.2971 17 1 3.4952 -7.7082 -0.0972 18 1 3.6279 -5.7777 -1.5593 19 6 5.4513 -1.4464 2.6969 20 6 6.4836 -1.0107 1.8768 21 6 7.7217 -0.7265 2.4189 22 6 7.9373 -0.8872 3.7773 23 9 9.1509 -0.6143 4.3045 24 6 6.9107 -1.3267 4.5960 25 6 5.6694 -1.6064 4.0587 26 1 -0.3633 -0.9270 -0.4438 27 1 -0.3633 0.0792 1.0245 28 1 -0.3632 0.8477 -0.5809 29 1 1.6112 -1.8585 -1.2683 30 1 3.1712 -0.8748 -1.2691 31 1 3.9436 -3.4865 3.2681 32 1 2.5137 -2.9706 2.3419 33 1 2.4876 -6.6419 2.0504 34 1 6.3173 -0.8902 0.8165 35 1 8.5236 -0.3832 1.7821 36 1 7.0807 -1.4510 5.6552 37 1 4.8690 -1.9496 4.6976 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072678593.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:38 Heat of formation + Delta-G solvation = -32.711267 kcal Electronic energy + Delta-G solvation = -21293.956205 eV Core-core repulsion = 17951.459091 eV Total energy + Delta-G solvation = -3342.497114 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.122 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -48.60857 -40.10860 -38.30516 -36.26759 -35.03233 -32.66944 -30.86287 -29.55876 -28.31784 -27.09849 -24.16237 -23.40960 -22.43365 -21.60424 -20.34257 -18.61028 -17.44149 -16.90927 -16.77824 -16.22105 -15.83978 -15.29641 -14.72262 -14.50105 -14.06596 -13.94741 -13.57683 -13.26365 -13.06630 -12.82937 -12.59861 -12.50187 -12.16597 -11.91279 -11.77784 -11.46910 -11.16259 -11.07826 -10.83017 -10.81123 -10.27302 -9.96678 -9.90657 -9.66445 -9.27693 -8.79987 -8.75288 -8.61360 -7.57102 -6.24681 -4.31530 1.44085 1.55726 3.03115 3.20694 3.25891 3.28581 3.56703 3.93117 4.27113 4.29764 4.55919 4.98111 5.05322 5.09387 5.11677 5.17893 5.27843 5.55866 5.56362 5.61590 5.69242 5.87688 5.94622 5.97246 6.11541 6.17119 6.20529 6.39515 6.40722 6.46782 6.58665 6.68650 6.73661 7.04614 7.09567 7.51052 7.69293 7.94813 8.06423 8.68691 8.83386 9.35528 10.82392 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.011607 B = 0.007183 C = 0.005011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2411.675532 B = 3897.035562 C = 5586.634800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.138 4.138 3 H 0.111 0.889 4 C -0.136 4.136 5 C -0.167 4.167 6 H 0.130 0.870 7 C 0.551 3.449 8 O -0.558 6.558 9 N -0.555 5.555 10 C 0.239 3.761 11 C -0.534 4.534 12 H 0.061 0.939 13 C 0.067 3.933 14 N -0.892 5.892 15 Si 0.897 3.103 16 H -0.276 1.276 17 H -0.286 1.286 18 H -0.275 1.275 19 C 0.172 3.828 20 C -0.085 4.085 21 C -0.141 4.141 22 C 0.073 3.927 23 F -0.148 7.148 24 C -0.140 4.140 25 C -0.102 4.102 26 H 0.058 0.942 27 H 0.059 0.941 28 H 0.058 0.942 29 H 0.102 0.898 30 H 0.093 0.907 31 H 0.040 0.960 32 H 0.045 0.955 33 H 0.267 0.733 34 H 0.129 0.871 35 H 0.132 0.868 36 H 0.134 0.866 37 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.794 7.364 -0.153 7.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.156 4.156 3 H 0.129 0.871 4 C -0.174 4.174 5 C -0.188 4.188 6 H 0.148 0.852 7 C 0.341 3.659 8 O -0.437 6.437 9 N -0.280 5.280 10 C 0.120 3.880 11 C -0.572 4.572 12 H 0.079 0.921 13 C -0.136 4.136 14 N -0.530 5.530 15 Si 0.724 3.276 16 H -0.201 1.201 17 H -0.211 1.211 18 H -0.200 1.200 19 C 0.079 3.921 20 C -0.105 4.105 21 C -0.160 4.160 22 C 0.054 3.946 23 F -0.126 7.126 24 C -0.159 4.159 25 C -0.122 4.122 26 H 0.077 0.923 27 H 0.078 0.922 28 H 0.077 0.923 29 H 0.120 0.880 30 H 0.111 0.889 31 H 0.058 0.942 32 H 0.063 0.937 33 H 0.076 0.924 34 H 0.147 0.853 35 H 0.150 0.850 36 H 0.152 0.848 37 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 0.908 7.753 -0.107 7.807 hybrid contribution 0.527 -1.025 -0.587 1.293 sum 1.435 6.729 -0.693 6.915 Atomic orbital electron populations 1.21358 0.92723 1.01816 1.01822 1.22388 0.94898 0.94993 1.03344 0.87098 1.22949 1.02401 1.00441 0.91607 1.22191 0.97226 1.03503 0.95833 0.85207 1.19717 0.85049 0.83675 0.77459 1.90625 1.69694 1.21178 1.62199 1.45970 1.15704 1.15067 1.51265 1.19635 0.94352 0.75723 0.98245 1.21338 1.31404 0.95961 1.08511 0.92078 1.24895 0.94711 0.97717 0.96283 1.69899 1.33707 1.16535 1.32847 0.86564 0.79068 0.79543 0.82402 1.20102 1.21103 1.19994 1.17678 0.86039 0.97055 0.91302 1.20985 0.90947 0.98541 1.00031 1.20896 0.98302 1.03464 0.93345 1.17595 0.80922 1.03915 0.92211 1.91449 1.42262 1.91910 1.87020 1.20873 0.92427 1.02532 1.00099 1.20996 0.97056 1.00313 0.93863 0.92328 0.92229 0.92268 0.87978 0.88895 0.94205 0.93737 0.92381 0.85330 0.84985 0.84839 0.84782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.46 10.19 37.16 0.38 -1.08 16 2 C -0.14 -2.07 5.92 -90.61 -0.54 -2.61 16 3 H 0.11 1.75 7.67 -51.93 -0.40 1.35 16 4 C -0.14 -2.18 9.88 -26.69 -0.26 -2.44 16 5 C -0.17 -3.00 5.07 -91.73 -0.47 -3.47 16 6 H 0.13 2.39 6.41 -51.93 -0.33 2.06 16 7 C 0.55 11.30 7.24 -10.98 -0.08 11.22 16 8 O -0.56 -12.29 15.66 5.55 0.09 -12.20 16 9 N -0.55 -11.62 2.56 -114.72 -0.29 -11.92 16 10 C 0.24 5.48 4.84 -5.20 -0.03 5.46 16 11 C -0.53 -13.44 9.38 -34.44 -0.32 -13.77 16 12 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 13 C 0.07 1.73 5.46 -17.82 -0.10 1.63 16 14 N -0.89 -23.84 13.29 55.43 0.74 -23.10 16 15 Si 0.90 20.16 29.54 -169.99 -5.02 15.14 16 16 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 17 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 18 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 19 C 0.17 3.39 5.15 -83.66 -0.43 2.96 16 20 C -0.09 -1.57 8.98 -39.40 -0.35 -1.92 16 21 C -0.14 -2.27 10.02 -39.54 -0.40 -2.67 16 22 C 0.07 1.17 7.30 -39.41 -0.29 0.88 16 23 F -0.15 -2.28 17.27 2.25 0.04 -2.25 16 24 C -0.14 -2.18 10.02 -39.54 -0.40 -2.57 16 25 C -0.10 -1.79 9.32 -39.40 -0.37 -2.16 16 26 H 0.06 0.68 7.90 -51.93 -0.41 0.27 16 27 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.10 1.51 8.05 -51.93 -0.42 1.09 16 30 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 31 H 0.04 0.96 7.36 -51.93 -0.38 0.58 16 32 H 0.04 1.04 6.11 -51.93 -0.32 0.72 16 33 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 34 H 0.13 2.37 8.06 -52.49 -0.42 1.95 16 35 H 0.13 1.79 8.06 -52.48 -0.42 1.36 16 36 H 0.13 1.70 8.06 -52.49 -0.42 1.28 16 37 H 0.13 2.18 7.83 -52.48 -0.41 1.77 16 LS Contribution 324.43 15.07 4.89 4.89 Total: -1.00 -27.86 324.43 -7.96 -35.82 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: -4.75 Total: 4.15 kcal Atomic # 6 Polarization: -6.88 SS G_CDS: -3.64 Total: -10.52 kcal Atomic # 7 Polarization: -35.46 SS G_CDS: 0.44 Total: -35.02 kcal Atomic # 8 Polarization: -12.29 SS G_CDS: 0.09 Total: -12.20 kcal Atomic # 9 Polarization: -2.28 SS G_CDS: 0.04 Total: -2.25 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.02 Total: 15.14 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -27.86 -7.96 -35.82 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072678593.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.107 kcal (2) G-P(sol) polarization free energy of solvation -27.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds