Wall clock time and date at job start Mon Mar 30 2020 01:44:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 115.54935 * 2 1 4 4 C 1.52996 * 117.49909 * 145.66200 * 2 1 3 5 5 C 1.52999 * 60.02974 * 107.50673 * 4 2 1 6 6 H 1.09003 * 117.49540 * 107.50921 * 5 4 2 7 7 C 1.50702 * 117.49522 * 252.52182 * 5 4 2 8 8 O 1.21282 * 120.00104 * 68.61396 * 7 5 4 9 9 N 1.34784 * 119.99676 * 248.60493 * 7 5 4 10 10 C 1.46496 * 120.00392 * 354.34221 * 9 7 5 11 11 C 1.50700 * 109.47073 * 89.99352 * 10 9 7 12 12 H 1.08002 * 120.00281 * 0.02562 * 11 10 9 13 13 C 1.37878 * 119.99982 * 179.97438 * 11 10 9 14 14 N 1.31517 * 119.99808 * 0.02562 * 13 11 10 15 15 Si 1.86802 * 119.99967 * 180.02562 * 13 11 10 16 16 H 1.48496 * 109.46918 * 359.97438 * 15 13 11 17 17 H 1.48500 * 109.47380 * 120.00300 * 15 13 11 18 18 H 1.48502 * 109.46990 * 239.99824 * 15 13 11 19 19 C 1.40029 * 119.99762 * 174.34025 * 9 7 5 20 20 C 1.38860 * 120.04074 * 302.83189 * 19 9 7 21 21 C 1.38115 * 119.95003 * 179.72012 * 20 19 9 22 22 C 1.38482 * 120.04692 * 0.57517 * 21 20 19 23 23 F 1.35095 * 119.95835 * 179.70112 * 22 21 20 24 24 C 1.38473 * 120.08793 * 359.67759 * 22 21 20 25 25 C 1.38119 * 120.04447 * 0.04334 * 24 22 21 26 26 H 1.08997 * 109.47278 * 325.72920 * 1 2 3 27 27 H 1.09008 * 109.46541 * 85.72910 * 1 2 3 28 28 H 1.08997 * 109.47133 * 205.72113 * 1 2 3 29 29 H 1.09002 * 117.50127 * 215.00456 * 4 2 1 30 30 H 1.09004 * 117.50299 * 0.02562 * 4 2 1 31 31 H 1.08997 * 109.47458 * 209.99697 * 10 9 7 32 32 H 1.09001 * 109.46954 * 330.00094 * 10 9 7 33 33 H 0.96999 * 119.99734 * 179.97438 * 14 13 11 34 34 H 1.07991 * 120.02503 * 359.97438 * 20 19 9 35 35 H 1.07998 * 119.97946 * 180.27404 * 21 20 19 36 36 H 1.07999 * 119.98034 * 180.02562 * 24 22 21 37 37 H 1.07997 * 120.01994 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2364 -1.1206 0.7655 5 6 2.2372 -1.1218 -0.7645 6 1 3.1726 -0.8765 -1.2675 7 6 1.3730 -2.1419 -1.4599 8 8 0.1648 -2.0546 -1.4008 9 7 1.9429 -3.1513 -2.1476 10 6 3.3967 -3.1885 -2.3241 11 6 4.0220 -3.9484 -1.1827 12 1 3.3987 -4.3627 -0.4040 13 6 5.3897 -4.1157 -1.1331 14 7 6.1486 -3.6117 -2.0816 15 14 6.1646 -5.0583 0.2813 16 1 5.1017 -5.5192 1.2102 17 1 6.9010 -6.2329 -0.2511 18 1 7.1074 -4.1716 1.0094 19 6 1.1453 -4.1645 -2.6936 20 6 0.3069 -4.9074 -1.8729 21 6 -0.4833 -5.9025 -2.4142 22 6 -0.4311 -6.1675 -3.7725 23 9 -1.2003 -7.1453 -4.2991 24 6 0.4082 -5.4313 -4.5917 25 6 1.1958 -4.4315 -4.0552 26 1 -0.3633 0.8492 0.5787 27 1 -0.3633 0.0765 -1.0249 28 1 -0.3633 -0.9258 0.4460 29 1 3.1713 -0.8745 1.2691 30 1 1.6113 -1.8582 1.2688 31 1 3.6361 -3.6841 -3.2649 32 1 3.7869 -2.1708 -2.3399 33 1 7.1108 -3.7291 -2.0465 34 1 0.2698 -4.7046 -0.8129 35 1 -1.1387 -6.4776 -1.7771 36 1 0.4472 -5.6391 -5.6507 37 1 1.8505 -3.8578 -4.6944 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072678594.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:40 Heat of formation + Delta-G solvation = -28.272349 kcal Electronic energy + Delta-G solvation = -21483.542896 eV Core-core repulsion = 18141.238268 eV Total energy + Delta-G solvation = -3342.304628 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.122 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -48.61018 -40.16129 -38.37721 -36.11569 -34.99746 -32.66613 -30.86117 -29.51244 -28.14581 -27.05578 -24.22082 -23.41123 -22.43216 -21.58946 -20.50844 -18.40744 -17.43829 -16.99556 -16.72738 -16.04082 -15.84471 -15.29991 -14.82070 -14.36015 -14.19985 -13.96616 -13.56491 -13.26389 -12.97138 -12.64300 -12.43935 -12.32877 -12.14010 -11.94819 -11.89505 -11.44184 -11.11336 -11.09970 -10.86185 -10.79905 -10.27455 -9.93509 -9.78170 -9.61991 -9.07405 -8.79439 -8.71520 -8.61813 -7.55958 -6.25040 -4.31680 1.44330 1.55786 3.05060 3.17793 3.26918 3.30630 3.59037 3.93352 4.27637 4.30241 4.56049 5.00983 5.06250 5.09253 5.10908 5.17469 5.34361 5.56098 5.61719 5.66751 5.70008 5.88706 6.12426 6.17189 6.18687 6.21767 6.38423 6.40239 6.42466 6.47031 6.67164 6.73927 6.80901 7.04784 7.09790 7.52214 7.69633 7.94860 8.07780 8.69877 8.85401 9.35557 10.82071 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.011328 B = 0.007670 C = 0.005173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2471.146880 B = 3649.574849 C = 5411.225310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.136 4.136 3 H 0.105 0.895 4 C -0.139 4.139 5 C -0.169 4.169 6 H 0.129 0.871 7 C 0.551 3.449 8 O -0.551 6.551 9 N -0.556 5.556 10 C 0.238 3.762 11 C -0.532 4.532 12 H 0.062 0.938 13 C 0.066 3.934 14 N -0.892 5.892 15 Si 0.896 3.104 16 H -0.272 1.272 17 H -0.282 1.282 18 H -0.282 1.282 19 C 0.173 3.827 20 C -0.085 4.085 21 C -0.141 4.141 22 C 0.073 3.927 23 F -0.148 7.148 24 C -0.140 4.140 25 C -0.103 4.103 26 H 0.041 0.959 27 H 0.064 0.936 28 H 0.061 0.939 29 H 0.101 0.899 30 H 0.093 0.907 31 H 0.040 0.960 32 H 0.045 0.955 33 H 0.265 0.735 34 H 0.129 0.871 35 H 0.132 0.868 36 H 0.133 0.867 37 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.894 1.900 0.097 8.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.154 4.154 3 H 0.123 0.877 4 C -0.176 4.176 5 C -0.190 4.190 6 H 0.147 0.853 7 C 0.341 3.659 8 O -0.430 6.430 9 N -0.281 5.281 10 C 0.120 3.880 11 C -0.570 4.570 12 H 0.080 0.920 13 C -0.137 4.137 14 N -0.530 5.530 15 Si 0.724 3.276 16 H -0.196 1.196 17 H -0.208 1.208 18 H -0.208 1.208 19 C 0.080 3.920 20 C -0.105 4.105 21 C -0.160 4.160 22 C 0.053 3.947 23 F -0.127 7.127 24 C -0.159 4.159 25 C -0.123 4.123 26 H 0.060 0.940 27 H 0.083 0.917 28 H 0.080 0.920 29 H 0.119 0.881 30 H 0.112 0.888 31 H 0.058 0.942 32 H 0.062 0.938 33 H 0.075 0.925 34 H 0.147 0.853 35 H 0.150 0.850 36 H 0.151 0.849 37 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -8.311 1.961 0.057 8.540 hybrid contribution 0.840 -0.860 0.569 1.330 sum -7.472 1.101 0.626 7.578 Atomic orbital electron populations 1.21308 0.92013 1.00810 1.02142 1.22405 0.96119 0.93651 1.03250 0.87672 1.22914 1.02400 1.00699 0.91608 1.22175 1.01644 0.99270 0.95910 0.85308 1.19707 0.87444 0.81226 0.77488 1.90636 1.14727 1.75730 1.61901 1.46011 1.09746 1.20975 1.51402 1.19636 0.71381 0.98787 0.98237 1.21419 0.91931 1.35261 1.08424 0.91978 1.24905 0.96979 0.95515 0.96292 1.69921 1.05376 1.44883 1.32818 0.86455 0.79321 0.79708 0.82126 1.19620 1.20832 1.20773 1.17669 0.92830 0.90201 0.91262 1.20980 0.95966 0.93523 1.00003 1.20897 1.01757 1.00021 0.93336 1.17596 0.94786 0.90074 0.92226 1.91446 1.73730 1.60435 1.87045 1.20873 0.97752 0.97228 1.00087 1.20996 0.99278 0.98097 0.93903 0.93987 0.91698 0.91981 0.88077 0.88823 0.94243 0.93766 0.92504 0.85345 0.85019 0.84872 0.84823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.58 8.43 37.16 0.31 -1.26 16 2 C -0.14 -2.02 6.41 -90.59 -0.58 -2.60 16 3 H 0.11 1.35 8.14 -51.93 -0.42 0.92 16 4 C -0.14 -2.20 9.88 -26.73 -0.26 -2.46 16 5 C -0.17 -3.01 5.35 -91.74 -0.49 -3.50 16 6 H 0.13 2.35 6.41 -51.93 -0.33 2.02 16 7 C 0.55 11.03 7.22 -10.98 -0.08 10.95 16 8 O -0.55 -11.51 12.51 5.56 0.07 -11.44 16 9 N -0.56 -11.50 2.56 -114.72 -0.29 -11.80 16 10 C 0.24 5.45 4.84 -5.20 -0.03 5.42 16 11 C -0.53 -13.38 9.38 -34.44 -0.32 -13.70 16 12 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 13 C 0.07 1.70 5.46 -17.82 -0.10 1.60 16 14 N -0.89 -23.86 13.29 55.43 0.74 -23.13 16 15 Si 0.90 20.18 29.54 -169.99 -5.02 15.15 16 16 H -0.27 -6.10 7.11 56.52 0.40 -5.69 16 17 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 18 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 19 C 0.17 3.37 5.15 -83.66 -0.43 2.94 16 20 C -0.08 -1.54 8.98 -39.40 -0.35 -1.90 16 21 C -0.14 -2.25 10.02 -39.54 -0.40 -2.65 16 22 C 0.07 1.16 7.30 -39.40 -0.29 0.87 16 23 F -0.15 -2.28 17.26 2.25 0.04 -2.24 16 24 C -0.14 -2.17 10.02 -39.54 -0.40 -2.56 16 25 C -0.10 -1.78 9.32 -39.40 -0.37 -2.15 16 26 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.06 1.05 7.26 -51.92 -0.38 0.68 16 28 H 0.06 1.01 7.02 -51.93 -0.36 0.64 16 29 H 0.10 1.47 8.14 -51.93 -0.42 1.05 16 30 H 0.09 1.51 8.05 -51.93 -0.42 1.09 16 31 H 0.04 0.95 7.36 -51.93 -0.38 0.57 16 32 H 0.04 1.03 6.11 -51.93 -0.32 0.71 16 33 H 0.27 6.76 8.31 -40.82 -0.34 6.43 16 34 H 0.13 2.34 8.06 -52.49 -0.42 1.92 16 35 H 0.13 1.77 8.06 -52.49 -0.42 1.34 16 36 H 0.13 1.69 8.06 -52.49 -0.42 1.27 16 37 H 0.13 2.17 7.83 -52.49 -0.41 1.76 16 LS Contribution 318.97 15.07 4.81 4.81 Total: -1.00 -27.38 318.97 -8.13 -35.50 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: -4.68 Total: 4.14 kcal Atomic # 6 Polarization: -7.22 SS G_CDS: -3.78 Total: -11.00 kcal Atomic # 7 Polarization: -35.36 SS G_CDS: 0.44 Total: -34.92 kcal Atomic # 8 Polarization: -11.51 SS G_CDS: 0.07 Total: -11.44 kcal Atomic # 9 Polarization: -2.28 SS G_CDS: 0.04 Total: -2.24 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.02 Total: 15.15 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -27.38 -8.13 -35.50 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072678594.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.229 kcal (2) G-P(sol) polarization free energy of solvation -27.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds