Wall clock time and date at job start Mon Mar 30 2020 01:44:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 115.54935 * 2 1 4 4 C 1.52996 * 117.49909 * 145.66200 * 2 1 3 5 5 C 1.52999 * 60.02974 * 107.50673 * 4 2 1 6 6 H 1.09003 * 117.49540 * 107.50921 * 5 4 2 7 7 C 1.50702 * 117.49522 * 252.52182 * 5 4 2 8 8 O 1.21282 * 120.00104 * 68.61396 * 7 5 4 9 9 N 1.34784 * 119.99676 * 248.60493 * 7 5 4 10 10 C 1.46496 * 120.00392 * 354.34221 * 9 7 5 11 11 C 1.50700 * 109.47073 * 89.99352 * 10 9 7 12 12 H 1.08002 * 120.00281 * 0.02562 * 11 10 9 13 13 C 1.37878 * 119.99982 * 179.97438 * 11 10 9 14 14 N 1.31517 * 119.99808 * 0.02562 * 13 11 10 15 15 Si 1.86802 * 119.99967 * 180.02562 * 13 11 10 16 16 H 1.48496 * 109.46918 * 359.97438 * 15 13 11 17 17 H 1.48500 * 109.47380 * 120.00300 * 15 13 11 18 18 H 1.48502 * 109.46990 * 239.99824 * 15 13 11 19 19 C 1.40029 * 119.99762 * 174.34025 * 9 7 5 20 20 C 1.38860 * 120.04074 * 302.83189 * 19 9 7 21 21 C 1.38115 * 119.95003 * 179.72012 * 20 19 9 22 22 C 1.38482 * 120.04692 * 0.57517 * 21 20 19 23 23 F 1.35095 * 119.95835 * 179.70112 * 22 21 20 24 24 C 1.38473 * 120.08793 * 359.67759 * 22 21 20 25 25 C 1.38119 * 120.04447 * 0.04334 * 24 22 21 26 26 H 1.08997 * 109.47278 * 325.72920 * 1 2 3 27 27 H 1.09008 * 109.46541 * 85.72910 * 1 2 3 28 28 H 1.08997 * 109.47133 * 205.72113 * 1 2 3 29 29 H 1.09002 * 117.50127 * 215.00456 * 4 2 1 30 30 H 1.09004 * 117.50299 * 0.02562 * 4 2 1 31 31 H 1.08997 * 109.47458 * 209.99697 * 10 9 7 32 32 H 1.09001 * 109.46954 * 330.00094 * 10 9 7 33 33 H 0.96999 * 119.99734 * 179.97438 * 14 13 11 34 34 H 1.07991 * 120.02503 * 359.97438 * 20 19 9 35 35 H 1.07998 * 119.97946 * 180.27404 * 21 20 19 36 36 H 1.07999 * 119.98034 * 180.02562 * 24 22 21 37 37 H 1.07997 * 120.01994 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2364 -1.1206 0.7655 5 6 2.2372 -1.1218 -0.7645 6 1 3.1726 -0.8765 -1.2675 7 6 1.3730 -2.1419 -1.4599 8 8 0.1648 -2.0546 -1.4008 9 7 1.9429 -3.1513 -2.1476 10 6 3.3967 -3.1885 -2.3241 11 6 4.0220 -3.9484 -1.1827 12 1 3.3987 -4.3627 -0.4040 13 6 5.3897 -4.1157 -1.1331 14 7 6.1486 -3.6117 -2.0816 15 14 6.1646 -5.0583 0.2813 16 1 5.1017 -5.5192 1.2102 17 1 6.9010 -6.2329 -0.2511 18 1 7.1074 -4.1716 1.0094 19 6 1.1453 -4.1645 -2.6936 20 6 0.3069 -4.9074 -1.8729 21 6 -0.4833 -5.9025 -2.4142 22 6 -0.4311 -6.1675 -3.7725 23 9 -1.2003 -7.1453 -4.2991 24 6 0.4082 -5.4313 -4.5917 25 6 1.1958 -4.4315 -4.0552 26 1 -0.3633 0.8492 0.5787 27 1 -0.3633 0.0765 -1.0249 28 1 -0.3633 -0.9258 0.4460 29 1 3.1713 -0.8745 1.2691 30 1 1.6113 -1.8582 1.2688 31 1 3.6361 -3.6841 -3.2649 32 1 3.7869 -2.1708 -2.3399 33 1 7.1108 -3.7291 -2.0465 34 1 0.2698 -4.7046 -0.8129 35 1 -1.1387 -6.4776 -1.7771 36 1 0.4472 -5.6391 -5.6507 37 1 1.8505 -3.8578 -4.6944 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072678594.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:40 Heat of formation + Delta-G solvation = -40.222430 kcal Electronic energy + Delta-G solvation = -21484.061090 eV Core-core repulsion = 18141.238268 eV Total energy + Delta-G solvation = -3342.822822 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.122 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -49.87206 -41.65158 -39.73569 -37.48535 -36.63795 -34.56341 -32.18504 -30.96587 -29.51877 -28.75857 -25.64849 -25.13414 -23.88227 -22.94881 -21.76997 -19.88093 -18.83734 -18.63734 -18.36028 -17.61629 -17.27287 -16.55992 -16.45553 -15.87106 -15.57287 -15.46168 -14.98020 -14.56816 -14.42321 -14.20127 -13.85293 -13.74279 -13.60239 -13.51396 -13.24800 -13.06045 -12.84693 -12.60991 -12.32038 -12.18687 -12.10701 -11.74612 -11.08481 -10.97587 -10.66460 -10.50189 -10.23557 -10.11221 -9.08572 -8.20944 -6.34375 0.07416 0.23483 1.39241 1.42908 1.51776 1.56713 2.08658 2.40603 2.57985 2.95944 3.09931 3.25243 3.64807 3.77300 3.84123 3.89094 4.04901 4.22511 4.24742 4.37949 4.45792 4.50046 4.84350 4.87424 4.90637 4.98517 5.01909 5.07166 5.08987 5.13204 5.17091 5.21005 5.40035 5.58313 5.63216 5.71299 6.01303 6.03029 6.43475 6.75914 7.24688 7.37753 8.84735 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.011328 B = 0.007670 C = 0.005173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2471.146880 B = 3649.574849 C = 5411.225310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.113 4.113 3 H 0.135 0.865 4 C -0.135 4.135 5 C -0.197 4.197 6 H 0.120 0.880 7 C 0.545 3.455 8 O -0.564 6.564 9 N -0.559 5.559 10 C 0.254 3.746 11 C -0.536 4.536 12 H 0.051 0.949 13 C 0.025 3.975 14 N -0.919 5.919 15 Si 0.953 3.047 16 H -0.272 1.272 17 H -0.282 1.282 18 H -0.274 1.274 19 C 0.138 3.862 20 C -0.099 4.099 21 C -0.135 4.135 22 C 0.074 3.926 23 F -0.141 7.141 24 C -0.130 4.130 25 C -0.112 4.112 26 H 0.072 0.928 27 H 0.048 0.952 28 H 0.043 0.957 29 H 0.116 0.884 30 H 0.086 0.914 31 H 0.024 0.976 32 H 0.037 0.963 33 H 0.268 0.732 34 H 0.120 0.880 35 H 0.158 0.842 36 H 0.165 0.835 37 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.320 1.770 0.559 8.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.131 4.131 3 H 0.153 0.847 4 C -0.173 4.173 5 C -0.218 4.218 6 H 0.138 0.862 7 C 0.337 3.663 8 O -0.445 6.445 9 N -0.285 5.285 10 C 0.135 3.865 11 C -0.574 4.574 12 H 0.069 0.931 13 C -0.176 4.176 14 N -0.558 5.558 15 Si 0.779 3.221 16 H -0.196 1.196 17 H -0.207 1.207 18 H -0.200 1.200 19 C 0.046 3.954 20 C -0.119 4.119 21 C -0.154 4.154 22 C 0.054 3.946 23 F -0.120 7.120 24 C -0.149 4.149 25 C -0.132 4.132 26 H 0.091 0.909 27 H 0.067 0.933 28 H 0.062 0.938 29 H 0.134 0.866 30 H 0.105 0.895 31 H 0.042 0.958 32 H 0.055 0.945 33 H 0.077 0.923 34 H 0.138 0.862 35 H 0.176 0.824 36 H 0.182 0.818 37 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -8.754 1.827 0.517 8.958 hybrid contribution 0.885 -0.857 0.375 1.288 sum -7.869 0.970 0.892 7.979 Atomic orbital electron populations 1.21257 0.91971 1.01187 1.01465 1.22578 0.96068 0.94111 1.00339 0.84744 1.22998 1.03174 1.01048 0.90068 1.22192 1.01795 1.00850 0.96967 0.86180 1.20110 0.87607 0.81328 0.77253 1.90613 1.15265 1.76135 1.62460 1.45934 1.08915 1.21700 1.51933 1.19256 0.72827 0.97721 0.96719 1.21550 0.92100 1.35181 1.08601 0.93116 1.25562 0.97413 0.96273 0.98307 1.70001 1.05661 1.45953 1.34231 0.85574 0.78433 0.78550 0.79559 1.19604 1.20748 1.19978 1.18052 0.93933 0.90893 0.92490 1.20989 0.96821 0.94490 0.99641 1.21122 1.01170 0.99170 0.93922 1.17674 0.94634 0.90010 0.92259 1.91468 1.73495 1.60099 1.86909 1.21162 0.96323 0.95825 1.01606 1.21135 0.99921 0.98886 0.93258 0.90902 0.93279 0.93823 0.86581 0.89518 0.95806 0.94467 0.92307 0.86223 0.82423 0.81786 0.84361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.91 8.43 71.98 0.61 -2.30 16 2 C -0.11 -3.19 6.41 -10.77 -0.07 -3.25 16 3 H 0.13 3.04 8.14 -2.39 -0.02 3.02 16 4 C -0.14 -4.19 9.88 30.59 0.30 -3.88 16 5 C -0.20 -7.05 5.35 -11.52 -0.06 -7.12 16 6 H 0.12 4.47 6.41 -2.39 -0.02 4.45 16 7 C 0.55 22.35 7.22 87.66 0.63 22.99 16 8 O -0.56 -24.07 12.51 -3.04 -0.04 -24.11 16 9 N -0.56 -23.81 2.56 -635.25 -1.63 -25.43 16 10 C 0.25 11.97 4.84 85.63 0.41 12.39 16 11 C -0.54 -27.36 9.38 25.60 0.24 -27.12 16 12 H 0.05 2.66 7.81 -2.91 -0.02 2.64 16 13 C 0.02 1.28 5.46 84.65 0.46 1.74 16 14 N -0.92 -49.45 13.29 21.45 0.28 -49.17 16 15 Si 0.95 41.19 29.54 68.60 2.03 43.22 16 16 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 17 H -0.28 -12.08 7.11 99.48 0.71 -11.38 16 18 H -0.27 -11.47 7.11 99.48 0.71 -10.77 16 19 C 0.14 5.48 5.15 38.13 0.20 5.67 16 20 C -0.10 -3.65 8.98 22.39 0.20 -3.45 16 21 C -0.13 -4.14 10.02 22.30 0.22 -3.92 16 22 C 0.07 2.21 7.30 22.38 0.16 2.37 16 23 F -0.14 -3.98 17.26 44.97 0.78 -3.21 16 24 C -0.13 -3.81 10.02 22.30 0.22 -3.58 16 25 C -0.11 -3.88 9.32 22.39 0.21 -3.67 16 26 H 0.07 1.62 8.14 -2.39 -0.02 1.61 16 27 H 0.05 1.56 7.26 -2.38 -0.02 1.55 16 28 H 0.04 1.40 7.02 -2.39 -0.02 1.38 16 29 H 0.12 3.21 8.14 -2.39 -0.02 3.19 16 30 H 0.09 2.78 8.05 -2.38 -0.02 2.76 16 31 H 0.02 1.19 7.36 -2.39 -0.02 1.17 16 32 H 0.04 1.80 6.11 -2.39 -0.01 1.78 16 33 H 0.27 13.65 8.31 -92.71 -0.77 12.88 16 34 H 0.12 4.49 8.06 -2.92 -0.02 4.47 16 35 H 0.16 3.91 8.06 -2.91 -0.02 3.89 16 36 H 0.16 3.71 8.06 -2.91 -0.02 3.69 16 37 H 0.14 4.53 7.83 -2.91 -0.02 4.51 16 Total: -1.00 -58.15 318.97 6.24 -51.91 By element: Atomic # 1 Polarization: 18.85 SS G_CDS: 1.08 Total: 19.93 kcal Atomic # 6 Polarization: -16.88 SS G_CDS: 3.74 Total: -13.13 kcal Atomic # 7 Polarization: -73.26 SS G_CDS: -1.34 Total: -74.60 kcal Atomic # 8 Polarization: -24.07 SS G_CDS: -0.04 Total: -24.11 kcal Atomic # 9 Polarization: -3.98 SS G_CDS: 0.78 Total: -3.21 kcal Atomic # 14 Polarization: 41.19 SS G_CDS: 2.03 Total: 43.22 kcal Total: -58.15 6.24 -51.91 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072678594.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.688 kcal (2) G-P(sol) polarization free energy of solvation -58.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds