Wall clock time and date at job start Mon Mar 30 2020 01:57:00
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53006 * 1
3 3 N 1.46499 * 109.47080 * 2 1
4 4 C 1.46505 * 119.99938 * 82.97131 * 3 2 1
5 5 S 1.65595 * 120.00002 * 262.97102 * 3 2 1
6 6 O 1.42093 * 106.40502 * 208.86461 * 5 3 2
7 7 O 1.42103 * 106.40420 * 341.78876 * 5 3 2
8 8 N 1.65600 * 107.21875 * 95.32524 * 5 3 2
9 9 C 1.46962 * 120.59337 * 84.19736 * 8 5 3
10 10 C 1.53813 * 108.40099 * 124.75804 * 9 8 5
11 11 N 1.46970 * 108.57596 * 49.63499 * 10 9 8
12 12 C 1.36942 * 120.58938 * 124.66930 * 11 10 9
13 13 H 1.08002 * 120.00146 * 330.00544 * 12 11 10
14 14 C 1.38810 * 119.99769 * 150.00351 * 12 11 10
15 15 N 1.31614 * 120.00235 * 160.86635 * 14 12 11
16 16 Si 1.86808 * 120.00025 * 340.86162 * 14 12 11
17 17 H 1.48500 * 109.46831 * 92.29255 * 16 14 12
18 18 H 1.48496 * 109.47087 * 212.29499 * 16 14 12
19 19 H 1.48501 * 109.46882 * 332.29577 * 16 14 12
20 20 C 1.46960 * 118.81536 * 304.64881 * 11 10 9
21 21 C 1.46961 * 120.59623 * 264.47951 * 8 5 3
22 22 H 1.08997 * 109.47030 * 65.19682 * 1 2 3
23 23 H 1.08998 * 109.46956 * 185.19075 * 1 2 3
24 24 H 1.09002 * 109.47015 * 305.18669 * 1 2 3
25 25 H 1.08999 * 109.47137 * 239.99891 * 2 1 3
26 26 H 1.09001 * 109.46932 * 120.00098 * 2 1 3
27 27 H 1.08997 * 109.46654 * 90.00077 * 4 3 2
28 28 H 1.09000 * 109.46746 * 210.00197 * 4 3 2
29 29 H 1.08999 * 109.46921 * 330.00002 * 4 3 2
30 30 H 1.09000 * 109.61116 * 244.54187 * 9 8 5
31 31 H 1.09001 * 109.61312 * 5.05365 * 9 8 5
32 32 H 1.08994 * 109.74159 * 289.85170 * 10 9 8
33 33 H 1.08997 * 109.53408 * 169.30455 * 10 9 8
34 34 H 0.96997 * 120.00320 * 179.97438 * 15 14 12
35 35 H 1.09001 * 109.61206 * 295.48399 * 20 11 10
36 36 H 1.08999 * 109.74863 * 175.04931 * 20 11 10
37 37 H 1.09007 * 109.60902 * 354.94679 * 21 8 5
38 38 H 1.09004 * 109.61248 * 115.45748 * 21 8 5
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 7 2.0184 1.3812 0.0000
4 6 2.1162 2.1236 1.2592
5 16 2.4598 2.1033 -1.4233
6 8 3.4583 3.0597 -1.0953
7 8 2.6663 1.0537 -2.3587
8 7 1.1507 2.9610 -1.9645
9 6 0.8911 4.3206 -1.4707
10 6 0.7917 5.2657 -2.6801
11 7 -0.1348 4.6785 -3.6583
12 6 -1.2174 5.3878 -4.1058
13 1 -1.6878 6.1175 -3.4635
14 6 -1.7100 5.1687 -5.3849
15 7 -2.9340 5.5427 -5.6917
16 14 -0.6357 4.3432 -6.6710
17 1 -0.8749 2.8778 -6.6491
18 1 -0.9711 4.8796 -8.0144
19 1 0.7930 4.6161 -6.3715
20 6 0.1217 3.3168 -4.1479
21 6 0.2242 2.3739 -2.9426
22 1 -0.3633 0.4311 -0.9328
23 1 -0.3633 -1.0234 0.0930
24 1 -0.3633 0.5922 0.8399
25 1 1.8934 -0.5138 -0.8900
26 1 1.8934 -0.5139 0.8900
27 1 3.1020 1.9677 1.6972
28 1 1.9678 3.1862 1.0670
29 1 1.3514 1.7691 1.9503
30 1 -0.0458 4.3349 -0.9139
31 1 1.7091 4.6371 -0.8235
32 1 1.7750 5.3868 -3.1345
33 1 0.4143 6.2352 -2.3550
34 1 -3.2782 5.3900 -6.5856
35 1 1.0573 3.2991 -4.7069
36 1 -0.6964 2.9975 -4.7936
37 1 0.6016 1.4043 -3.2678
38 1 -0.7592 2.2528 -2.4882
RHF calculation, no. of doubly occupied orbitals= 50
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000072709207.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:57:00
Heat of formation + Delta-G solvation = -36.724326 kcal
Electronic energy + Delta-G solvation = -21470.971155 eV
Core-core repulsion = 18283.663935 eV
Total energy + Delta-G solvation = -3187.307220 eV
No. of doubly occupied orbitals = 50
Molecular weight
(most abundant/longest-lived isotopes) = 277.125 amu
Computer time = 0.34 seconds
Orbital eigenvalues (eV)
-37.88880 -37.24918 -36.77223 -35.70917 -33.91815 -31.37778 -30.94216 -30.63333
-26.62886 -26.31510 -23.56672 -22.98197 -22.68656 -20.36321 -18.80041 -17.89324
-17.37593 -16.49661 -16.19102 -15.26366 -15.04636 -14.48581 -14.23789 -14.18855
-14.00846 -13.86684 -13.44358 -12.80429 -12.77923 -12.72856 -12.44528 -12.23404
-12.17707 -11.98643 -11.75686 -11.62348 -11.46365 -11.09956 -11.03739 -10.85925
-10.39131 -10.27000 -9.93362 -9.56308 -9.23167 -9.06291 -8.52000 -6.96016
-5.99810 -3.38576 0.66079 2.92414 3.29668 3.47064 3.51589 3.56377
4.38939 4.49235 4.59757 4.86500 4.97659 5.02845 5.08180 5.25302
5.32634 5.36604 5.52045 5.54983 5.60570 5.62185 5.69839 5.88183
5.89013 5.98356 6.03104 6.09688 6.16179 6.34307 6.46692 6.50850
6.55940 6.78990 6.97889 7.91659 8.28606 8.87934 9.66250 10.04998
11.15882
Molecular weight = 277.12amu
Principal moments of inertia in cm(-1)
A = 0.028313 B = 0.006091 C = 0.005989
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 988.708838 B = 4596.094186 C = 4674.173861
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.175 4.175
2 C 0.112 3.888
3 N -1.014 6.014
4 C 0.097 3.903
5 S 2.778 3.222
6 O -0.978 6.978
7 O -0.979 6.979
8 N -0.995 5.995
9 C 0.104 3.896
10 C 0.137 3.863
11 N -0.603 5.603
12 C -0.262 4.262
13 H 0.086 0.914
14 C 0.026 3.974
15 N -0.907 5.907
16 Si 0.880 3.120
17 H -0.286 1.286
18 H -0.301 1.301
19 H -0.270 1.270
20 C 0.115 3.885
21 C 0.105 3.895
22 H 0.060 0.940
23 H 0.066 0.934
24 H 0.059 0.941
25 H 0.091 0.909
26 H 0.076 0.924
27 H 0.055 0.945
28 H 0.068 0.932
29 H 0.070 0.930
30 H 0.068 0.932
31 H 0.079 0.921
32 H 0.030 0.970
33 H 0.075 0.925
34 H 0.263 0.737
35 H 0.031 0.969
36 H 0.083 0.917
37 H 0.083 0.917
38 H 0.070 0.930
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 7.686 -9.856 13.921 18.709
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.234 4.234
2 C -0.014 4.014
3 N -0.853 5.853
4 C -0.049 4.049
5 S 2.788 3.212
6 O -0.962 6.962
7 O -0.963 6.963
8 N -0.836 5.836
9 C -0.023 4.023
10 C 0.010 3.990
11 N -0.327 5.327
12 C -0.390 4.390
13 H 0.104 0.896
14 C -0.173 4.173
15 N -0.549 5.549
16 Si 0.710 3.290
17 H -0.214 1.214
18 H -0.229 1.229
19 H -0.195 1.195
20 C -0.012 4.012
21 C -0.022 4.022
22 H 0.080 0.920
23 H 0.085 0.915
24 H 0.078 0.922
25 H 0.110 0.890
26 H 0.095 0.905
27 H 0.074 0.926
28 H 0.087 0.913
29 H 0.089 0.911
30 H 0.086 0.914
31 H 0.097 0.903
32 H 0.048 0.952
33 H 0.094 0.906
34 H 0.073 0.927
35 H 0.049 0.951
36 H 0.101 0.899
37 H 0.102 0.898
38 H 0.088 0.912
Dipole moment (debyes) X Y Z Total
from point charges 8.414 -9.893 13.404 18.664
hybrid contribution 0.017 -0.431 -0.574 0.718
sum 8.432 -10.324 12.829 18.500
Atomic orbital electron populations
1.22244 0.95874 1.02319 1.02943 1.21334 0.94528 0.81641 1.03860
1.58047 1.81873 1.22422 1.22988 1.21398 1.01821 0.95790 0.85866
1.02177 0.73666 0.72815 0.72592 1.93581 1.55939 1.62181 1.84490
1.93556 1.85099 1.56859 1.60818 1.57800 1.45690 1.25326 1.54816
1.22124 1.00880 0.81316 0.97944 1.21341 0.93513 0.95016 0.89176
1.44236 1.28190 1.10709 1.49527 1.18911 1.03257 1.20116 0.96761
0.89606 1.25335 0.96327 0.98598 0.97045 1.69812 1.14200 1.50033
1.20890 0.86987 0.82138 0.78331 0.81547 1.21358 1.22928 1.19463
1.21686 0.99743 0.85674 0.94091 1.22071 0.92930 0.96724 0.90511
0.92044 0.91497 0.92170 0.89043 0.90530 0.92612 0.91333 0.91146
0.91398 0.90303 0.95174 0.90634 0.92672 0.95129 0.89916 0.89843
0.91162
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -1.61 10.22 37.16 0.38 -1.23 16
2 C 0.11 1.10 6.38 -4.04 -0.03 1.08 16
3 N -1.01 -11.85 3.24 -121.75 -0.40 -12.25 16
4 C 0.10 0.90 10.31 59.85 0.62 1.51 16
5 S 2.78 43.56 6.06 -107.50 -0.65 42.91 16
6 O -0.98 -17.39 16.17 -57.17 -0.92 -18.32 16
7 O -0.98 -17.46 15.05 -57.17 -0.86 -18.32 16
8 N -0.99 -16.32 3.32 -113.00 -0.37 -16.70 16
9 C 0.10 1.66 6.63 -3.37 -0.02 1.64 16
10 C 0.14 2.67 6.69 -3.36 -0.02 2.65 16
11 N -0.60 -14.12 2.71 -171.76 -0.47 -14.58 16
12 C -0.26 -7.14 10.02 -15.06 -0.15 -7.29 16
13 H 0.09 2.48 8.06 -52.49 -0.42 2.05 16
14 C 0.03 0.75 5.24 -17.43 -0.09 0.66 16
15 N -0.91 -27.28 13.97 55.49 0.78 -26.51 16
16 Si 0.88 22.27 24.38 -169.99 -4.14 18.12 16
17 H -0.29 -6.91 6.62 56.52 0.37 -6.54 16
18 H -0.30 -7.75 7.11 56.52 0.40 -7.35 16
19 H -0.27 -6.83 6.69 56.52 0.38 -6.45 16
20 C 0.12 2.52 4.36 -3.60 -0.02 2.50 16
21 C 0.10 1.84 6.45 -3.60 -0.02 1.82 16
22 H 0.06 0.66 7.95 -51.93 -0.41 0.24 16
23 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16
24 H 0.06 0.52 7.98 -51.93 -0.41 0.11 16
25 H 0.09 0.99 6.83 -51.93 -0.35 0.63 16
26 H 0.08 0.58 8.12 -51.93 -0.42 0.16 16
27 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16
28 H 0.07 0.63 7.91 -51.93 -0.41 0.22 16
29 H 0.07 0.50 7.91 -51.93 -0.41 0.09 16
30 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16
31 H 0.08 1.09 7.07 -51.93 -0.37 0.72 16
32 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16
33 H 0.08 1.39 7.93 -51.93 -0.41 0.98 16
34 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16
35 H 0.03 0.69 7.16 -51.93 -0.37 0.31 16
36 H 0.08 1.92 4.58 -51.93 -0.24 1.68 16
37 H 0.08 1.35 6.81 -51.93 -0.35 1.00 16
38 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16
LS Contribution 308.97 15.07 4.66 4.66
Total: -1.00 -33.29 308.97 -7.63 -40.92
By element:
Atomic # 1 Polarization: 2.62 SS G_CDS: -5.89 Total: -3.27 kcal
Atomic # 6 Polarization: 2.69 SS G_CDS: 0.65 Total: 3.33 kcal
Atomic # 7 Polarization: -69.58 SS G_CDS: -0.46 Total: -70.04 kcal
Atomic # 8 Polarization: -34.85 SS G_CDS: -1.79 Total: -36.63 kcal
Atomic # 14 Polarization: 22.27 SS G_CDS: -4.14 Total: 18.12 kcal
Atomic # 16 Polarization: 43.56 SS G_CDS: -0.65 Total: 42.91 kcal
Total LS contribution 4.66 Total: 4.66 kcal
Total: -33.29 -7.63 -40.92 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000072709207.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 4.194 kcal
(2) G-P(sol) polarization free energy of solvation -33.289 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.095 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.629 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.918 kcal
(6) G-S(sol) free energy of system = (1) + (5) -36.724 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.34 seconds