Wall clock time and date at job start Mon Mar 30 2020 01:57:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46499 * 109.47080 * 2 1 4 4 C 1.46505 * 119.99938 * 82.97131 * 3 2 1 5 5 S 1.65595 * 120.00002 * 262.97102 * 3 2 1 6 6 O 1.42093 * 106.40502 * 208.86461 * 5 3 2 7 7 O 1.42103 * 106.40420 * 341.78876 * 5 3 2 8 8 N 1.65600 * 107.21875 * 95.32524 * 5 3 2 9 9 C 1.46962 * 120.59337 * 84.19736 * 8 5 3 10 10 C 1.53813 * 108.40099 * 124.75804 * 9 8 5 11 11 N 1.46970 * 108.57596 * 49.63499 * 10 9 8 12 12 C 1.36942 * 120.58938 * 124.66930 * 11 10 9 13 13 H 1.08002 * 120.00146 * 330.00544 * 12 11 10 14 14 C 1.38810 * 119.99769 * 150.00351 * 12 11 10 15 15 N 1.31614 * 120.00235 * 160.86635 * 14 12 11 16 16 Si 1.86808 * 120.00025 * 340.86162 * 14 12 11 17 17 H 1.48500 * 109.46831 * 92.29255 * 16 14 12 18 18 H 1.48496 * 109.47087 * 212.29499 * 16 14 12 19 19 H 1.48501 * 109.46882 * 332.29577 * 16 14 12 20 20 C 1.46960 * 118.81536 * 304.64881 * 11 10 9 21 21 C 1.46961 * 120.59623 * 264.47951 * 8 5 3 22 22 H 1.08997 * 109.47030 * 65.19682 * 1 2 3 23 23 H 1.08998 * 109.46956 * 185.19075 * 1 2 3 24 24 H 1.09002 * 109.47015 * 305.18669 * 1 2 3 25 25 H 1.08999 * 109.47137 * 239.99891 * 2 1 3 26 26 H 1.09001 * 109.46932 * 120.00098 * 2 1 3 27 27 H 1.08997 * 109.46654 * 90.00077 * 4 3 2 28 28 H 1.09000 * 109.46746 * 210.00197 * 4 3 2 29 29 H 1.08999 * 109.46921 * 330.00002 * 4 3 2 30 30 H 1.09000 * 109.61116 * 244.54187 * 9 8 5 31 31 H 1.09001 * 109.61312 * 5.05365 * 9 8 5 32 32 H 1.08994 * 109.74159 * 289.85170 * 10 9 8 33 33 H 1.08997 * 109.53408 * 169.30455 * 10 9 8 34 34 H 0.96997 * 120.00320 * 179.97438 * 15 14 12 35 35 H 1.09001 * 109.61206 * 295.48399 * 20 11 10 36 36 H 1.08999 * 109.74863 * 175.04931 * 20 11 10 37 37 H 1.09007 * 109.60902 * 354.94679 * 21 8 5 38 38 H 1.09004 * 109.61248 * 115.45748 * 21 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1162 2.1236 1.2592 5 16 2.4598 2.1033 -1.4233 6 8 3.4583 3.0597 -1.0953 7 8 2.6663 1.0537 -2.3587 8 7 1.1507 2.9610 -1.9645 9 6 0.8911 4.3206 -1.4707 10 6 0.7917 5.2657 -2.6801 11 7 -0.1348 4.6785 -3.6583 12 6 -1.2174 5.3878 -4.1058 13 1 -1.6878 6.1175 -3.4635 14 6 -1.7100 5.1687 -5.3849 15 7 -2.9340 5.5427 -5.6917 16 14 -0.6357 4.3432 -6.6710 17 1 -0.8749 2.8778 -6.6491 18 1 -0.9711 4.8796 -8.0144 19 1 0.7930 4.6161 -6.3715 20 6 0.1217 3.3168 -4.1479 21 6 0.2242 2.3739 -2.9426 22 1 -0.3633 0.4311 -0.9328 23 1 -0.3633 -1.0234 0.0930 24 1 -0.3633 0.5922 0.8399 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5139 0.8900 27 1 3.1020 1.9677 1.6972 28 1 1.9678 3.1862 1.0670 29 1 1.3514 1.7691 1.9503 30 1 -0.0458 4.3349 -0.9139 31 1 1.7091 4.6371 -0.8235 32 1 1.7750 5.3868 -3.1345 33 1 0.4143 6.2352 -2.3550 34 1 -3.2782 5.3900 -6.5856 35 1 1.0573 3.2991 -4.7069 36 1 -0.6964 2.9975 -4.7936 37 1 0.6016 1.4043 -3.2678 38 1 -0.7592 2.2528 -2.4882 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072709207.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:00 Heat of formation + Delta-G solvation = -36.724326 kcal Electronic energy + Delta-G solvation = -21470.971155 eV Core-core repulsion = 18283.663935 eV Total energy + Delta-G solvation = -3187.307220 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.125 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -37.88880 -37.24918 -36.77223 -35.70917 -33.91815 -31.37778 -30.94216 -30.63333 -26.62886 -26.31510 -23.56672 -22.98197 -22.68656 -20.36321 -18.80041 -17.89324 -17.37593 -16.49661 -16.19102 -15.26366 -15.04636 -14.48581 -14.23789 -14.18855 -14.00846 -13.86684 -13.44358 -12.80429 -12.77923 -12.72856 -12.44528 -12.23404 -12.17707 -11.98643 -11.75686 -11.62348 -11.46365 -11.09956 -11.03739 -10.85925 -10.39131 -10.27000 -9.93362 -9.56308 -9.23167 -9.06291 -8.52000 -6.96016 -5.99810 -3.38576 0.66079 2.92414 3.29668 3.47064 3.51589 3.56377 4.38939 4.49235 4.59757 4.86500 4.97659 5.02845 5.08180 5.25302 5.32634 5.36604 5.52045 5.54983 5.60570 5.62185 5.69839 5.88183 5.89013 5.98356 6.03104 6.09688 6.16179 6.34307 6.46692 6.50850 6.55940 6.78990 6.97889 7.91659 8.28606 8.87934 9.66250 10.04998 11.15882 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.028313 B = 0.006091 C = 0.005989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.708838 B = 4596.094186 C = 4674.173861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.112 3.888 3 N -1.014 6.014 4 C 0.097 3.903 5 S 2.778 3.222 6 O -0.978 6.978 7 O -0.979 6.979 8 N -0.995 5.995 9 C 0.104 3.896 10 C 0.137 3.863 11 N -0.603 5.603 12 C -0.262 4.262 13 H 0.086 0.914 14 C 0.026 3.974 15 N -0.907 5.907 16 Si 0.880 3.120 17 H -0.286 1.286 18 H -0.301 1.301 19 H -0.270 1.270 20 C 0.115 3.885 21 C 0.105 3.895 22 H 0.060 0.940 23 H 0.066 0.934 24 H 0.059 0.941 25 H 0.091 0.909 26 H 0.076 0.924 27 H 0.055 0.945 28 H 0.068 0.932 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.079 0.921 32 H 0.030 0.970 33 H 0.075 0.925 34 H 0.263 0.737 35 H 0.031 0.969 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.686 -9.856 13.921 18.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.014 4.014 3 N -0.853 5.853 4 C -0.049 4.049 5 S 2.788 3.212 6 O -0.962 6.962 7 O -0.963 6.963 8 N -0.836 5.836 9 C -0.023 4.023 10 C 0.010 3.990 11 N -0.327 5.327 12 C -0.390 4.390 13 H 0.104 0.896 14 C -0.173 4.173 15 N -0.549 5.549 16 Si 0.710 3.290 17 H -0.214 1.214 18 H -0.229 1.229 19 H -0.195 1.195 20 C -0.012 4.012 21 C -0.022 4.022 22 H 0.080 0.920 23 H 0.085 0.915 24 H 0.078 0.922 25 H 0.110 0.890 26 H 0.095 0.905 27 H 0.074 0.926 28 H 0.087 0.913 29 H 0.089 0.911 30 H 0.086 0.914 31 H 0.097 0.903 32 H 0.048 0.952 33 H 0.094 0.906 34 H 0.073 0.927 35 H 0.049 0.951 36 H 0.101 0.899 37 H 0.102 0.898 38 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 8.414 -9.893 13.404 18.664 hybrid contribution 0.017 -0.431 -0.574 0.718 sum 8.432 -10.324 12.829 18.500 Atomic orbital electron populations 1.22244 0.95874 1.02319 1.02943 1.21334 0.94528 0.81641 1.03860 1.58047 1.81873 1.22422 1.22988 1.21398 1.01821 0.95790 0.85866 1.02177 0.73666 0.72815 0.72592 1.93581 1.55939 1.62181 1.84490 1.93556 1.85099 1.56859 1.60818 1.57800 1.45690 1.25326 1.54816 1.22124 1.00880 0.81316 0.97944 1.21341 0.93513 0.95016 0.89176 1.44236 1.28190 1.10709 1.49527 1.18911 1.03257 1.20116 0.96761 0.89606 1.25335 0.96327 0.98598 0.97045 1.69812 1.14200 1.50033 1.20890 0.86987 0.82138 0.78331 0.81547 1.21358 1.22928 1.19463 1.21686 0.99743 0.85674 0.94091 1.22071 0.92930 0.96724 0.90511 0.92044 0.91497 0.92170 0.89043 0.90530 0.92612 0.91333 0.91146 0.91398 0.90303 0.95174 0.90634 0.92672 0.95129 0.89916 0.89843 0.91162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.61 10.22 37.16 0.38 -1.23 16 2 C 0.11 1.10 6.38 -4.04 -0.03 1.08 16 3 N -1.01 -11.85 3.24 -121.75 -0.40 -12.25 16 4 C 0.10 0.90 10.31 59.85 0.62 1.51 16 5 S 2.78 43.56 6.06 -107.50 -0.65 42.91 16 6 O -0.98 -17.39 16.17 -57.17 -0.92 -18.32 16 7 O -0.98 -17.46 15.05 -57.17 -0.86 -18.32 16 8 N -0.99 -16.32 3.32 -113.00 -0.37 -16.70 16 9 C 0.10 1.66 6.63 -3.37 -0.02 1.64 16 10 C 0.14 2.67 6.69 -3.36 -0.02 2.65 16 11 N -0.60 -14.12 2.71 -171.76 -0.47 -14.58 16 12 C -0.26 -7.14 10.02 -15.06 -0.15 -7.29 16 13 H 0.09 2.48 8.06 -52.49 -0.42 2.05 16 14 C 0.03 0.75 5.24 -17.43 -0.09 0.66 16 15 N -0.91 -27.28 13.97 55.49 0.78 -26.51 16 16 Si 0.88 22.27 24.38 -169.99 -4.14 18.12 16 17 H -0.29 -6.91 6.62 56.52 0.37 -6.54 16 18 H -0.30 -7.75 7.11 56.52 0.40 -7.35 16 19 H -0.27 -6.83 6.69 56.52 0.38 -6.45 16 20 C 0.12 2.52 4.36 -3.60 -0.02 2.50 16 21 C 0.10 1.84 6.45 -3.60 -0.02 1.82 16 22 H 0.06 0.66 7.95 -51.93 -0.41 0.24 16 23 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 24 H 0.06 0.52 7.98 -51.93 -0.41 0.11 16 25 H 0.09 0.99 6.83 -51.93 -0.35 0.63 16 26 H 0.08 0.58 8.12 -51.93 -0.42 0.16 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.07 0.63 7.91 -51.93 -0.41 0.22 16 29 H 0.07 0.50 7.91 -51.93 -0.41 0.09 16 30 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.08 1.09 7.07 -51.93 -0.37 0.72 16 32 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.08 1.39 7.93 -51.93 -0.41 0.98 16 34 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 35 H 0.03 0.69 7.16 -51.93 -0.37 0.31 16 36 H 0.08 1.92 4.58 -51.93 -0.24 1.68 16 37 H 0.08 1.35 6.81 -51.93 -0.35 1.00 16 38 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 LS Contribution 308.97 15.07 4.66 4.66 Total: -1.00 -33.29 308.97 -7.63 -40.92 By element: Atomic # 1 Polarization: 2.62 SS G_CDS: -5.89 Total: -3.27 kcal Atomic # 6 Polarization: 2.69 SS G_CDS: 0.65 Total: 3.33 kcal Atomic # 7 Polarization: -69.58 SS G_CDS: -0.46 Total: -70.04 kcal Atomic # 8 Polarization: -34.85 SS G_CDS: -1.79 Total: -36.63 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -4.14 Total: 18.12 kcal Atomic # 16 Polarization: 43.56 SS G_CDS: -0.65 Total: 42.91 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -33.29 -7.63 -40.92 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072709207.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.194 kcal (2) G-P(sol) polarization free energy of solvation -33.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds