Wall clock time and date at job start Mon Mar 30 2020 01:56:59
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53006 * 1
3 3 N 1.46499 * 109.47080 * 2 1
4 4 C 1.46505 * 119.99938 * 82.97131 * 3 2 1
5 5 S 1.65595 * 120.00002 * 262.97102 * 3 2 1
6 6 O 1.42093 * 106.40502 * 208.86461 * 5 3 2
7 7 O 1.42103 * 106.40420 * 341.78876 * 5 3 2
8 8 N 1.65600 * 107.21875 * 95.32524 * 5 3 2
9 9 C 1.46962 * 120.59337 * 84.19736 * 8 5 3
10 10 C 1.53813 * 108.40099 * 124.75804 * 9 8 5
11 11 N 1.46970 * 108.57596 * 49.63499 * 10 9 8
12 12 C 1.36942 * 120.58938 * 124.66930 * 11 10 9
13 13 H 1.08002 * 120.00146 * 330.00544 * 12 11 10
14 14 C 1.38810 * 119.99769 * 150.00351 * 12 11 10
15 15 N 1.31614 * 120.00235 * 160.86635 * 14 12 11
16 16 Si 1.86808 * 120.00025 * 340.86162 * 14 12 11
17 17 H 1.48500 * 109.46831 * 92.29255 * 16 14 12
18 18 H 1.48496 * 109.47087 * 212.29499 * 16 14 12
19 19 H 1.48501 * 109.46882 * 332.29577 * 16 14 12
20 20 C 1.46960 * 118.81536 * 304.64881 * 11 10 9
21 21 C 1.46961 * 120.59623 * 264.47951 * 8 5 3
22 22 H 1.08997 * 109.47030 * 65.19682 * 1 2 3
23 23 H 1.08998 * 109.46956 * 185.19075 * 1 2 3
24 24 H 1.09002 * 109.47015 * 305.18669 * 1 2 3
25 25 H 1.08999 * 109.47137 * 239.99891 * 2 1 3
26 26 H 1.09001 * 109.46932 * 120.00098 * 2 1 3
27 27 H 1.08997 * 109.46654 * 90.00077 * 4 3 2
28 28 H 1.09000 * 109.46746 * 210.00197 * 4 3 2
29 29 H 1.08999 * 109.46921 * 330.00002 * 4 3 2
30 30 H 1.09000 * 109.61116 * 244.54187 * 9 8 5
31 31 H 1.09001 * 109.61312 * 5.05365 * 9 8 5
32 32 H 1.08994 * 109.74159 * 289.85170 * 10 9 8
33 33 H 1.08997 * 109.53408 * 169.30455 * 10 9 8
34 34 H 0.96997 * 120.00320 * 179.97438 * 15 14 12
35 35 H 1.09001 * 109.61206 * 295.48399 * 20 11 10
36 36 H 1.08999 * 109.74863 * 175.04931 * 20 11 10
37 37 H 1.09007 * 109.60902 * 354.94679 * 21 8 5
38 38 H 1.09004 * 109.61248 * 115.45748 * 21 8 5
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 7 2.0184 1.3812 0.0000
4 6 2.1162 2.1236 1.2592
5 16 2.4598 2.1033 -1.4233
6 8 3.4583 3.0597 -1.0953
7 8 2.6663 1.0537 -2.3587
8 7 1.1507 2.9610 -1.9645
9 6 0.8911 4.3206 -1.4707
10 6 0.7917 5.2657 -2.6801
11 7 -0.1348 4.6785 -3.6583
12 6 -1.2174 5.3878 -4.1058
13 1 -1.6878 6.1175 -3.4635
14 6 -1.7100 5.1687 -5.3849
15 7 -2.9340 5.5427 -5.6917
16 14 -0.6357 4.3432 -6.6710
17 1 -0.8749 2.8778 -6.6491
18 1 -0.9711 4.8796 -8.0144
19 1 0.7930 4.6161 -6.3715
20 6 0.1217 3.3168 -4.1479
21 6 0.2242 2.3739 -2.9426
22 1 -0.3633 0.4311 -0.9328
23 1 -0.3633 -1.0234 0.0930
24 1 -0.3633 0.5922 0.8399
25 1 1.8934 -0.5138 -0.8900
26 1 1.8934 -0.5139 0.8900
27 1 3.1020 1.9677 1.6972
28 1 1.9678 3.1862 1.0670
29 1 1.3514 1.7691 1.9503
30 1 -0.0458 4.3349 -0.9139
31 1 1.7091 4.6371 -0.8235
32 1 1.7750 5.3868 -3.1345
33 1 0.4143 6.2352 -2.3550
34 1 -3.2782 5.3900 -6.5856
35 1 1.0573 3.2991 -4.7069
36 1 -0.6964 2.9975 -4.7936
37 1 0.6016 1.4043 -3.2678
38 1 -0.7592 2.2528 -2.4882
RHF calculation, no. of doubly occupied orbitals= 50
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000072709207.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:56:59
Heat of formation + Delta-G solvation = -62.195828 kcal
Electronic energy + Delta-G solvation = -21472.075682 eV
Core-core repulsion = 18283.663935 eV
Total energy + Delta-G solvation = -3188.411747 eV
No. of doubly occupied orbitals = 50
Molecular weight
(most abundant/longest-lived isotopes) = 277.125 amu
Computer time = 0.39 seconds
Orbital eigenvalues (eV)
-39.45140 -38.53722 -37.62642 -37.01546 -35.66384 -33.35928 -32.26678 -31.58270
-28.37883 -27.10270 -25.17053 -24.66630 -23.54829 -21.95428 -20.03175 -19.31683
-18.54105 -18.18112 -17.41971 -17.05818 -16.23313 -16.00559 -15.65952 -15.42023
-15.16006 -15.07130 -14.80110 -14.57464 -14.20488 -13.79735 -13.64835 -13.50262
-13.29515 -13.19161 -13.12958 -12.96489 -12.83050 -12.44492 -12.38009 -12.23397
-12.01153 -11.81397 -11.62715 -11.55321 -10.87264 -10.24286 -10.06178 -8.86374
-8.18321 -5.52680 -0.53768 1.27215 1.40099 1.48251 1.79445 2.38781
2.39594 3.05020 3.19371 3.29129 3.65783 3.83197 4.13105 4.27290
4.31306 4.32740 4.35475 4.49444 4.52893 4.58370 4.64888 4.71377
4.79096 4.81669 4.92756 4.94961 4.97483 5.05811 5.22701 5.32159
5.39199 5.46550 5.74459 5.85977 6.12992 6.87959 7.58100 8.01288
9.01199
Molecular weight = 277.12amu
Principal moments of inertia in cm(-1)
A = 0.028313 B = 0.006091 C = 0.005989
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 988.708838 B = 4596.094186 C = 4674.173861
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.174 4.174
2 C 0.106 3.894
3 N -1.006 6.006
4 C 0.086 3.914
5 S 2.791 3.209
6 O -1.001 7.001
7 O -1.004 7.004
8 N -1.000 6.000
9 C 0.113 3.887
10 C 0.128 3.872
11 N -0.616 5.616
12 C -0.246 4.246
13 H 0.061 0.939
14 C -0.026 4.026
15 N -0.952 5.952
16 Si 0.934 3.066
17 H -0.269 1.269
18 H -0.309 1.309
19 H -0.272 1.272
20 C 0.106 3.894
21 C 0.116 3.884
22 H 0.043 0.957
23 H 0.084 0.916
24 H 0.067 0.933
25 H 0.080 0.920
26 H 0.106 0.894
27 H 0.064 0.936
28 H 0.068 0.932
29 H 0.097 0.903
30 H 0.081 0.919
31 H 0.104 0.896
32 H 0.027 0.973
33 H 0.080 0.920
34 H 0.262 0.738
35 H 0.024 0.976
36 H 0.067 0.933
37 H 0.098 0.902
38 H 0.080 0.920
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 8.725 -11.466 15.964 21.505
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.233 4.233
2 C -0.019 4.019
3 N -0.848 5.848
4 C -0.058 4.058
5 S 2.801 3.199
6 O -0.985 6.985
7 O -0.988 6.988
8 N -0.840 5.840
9 C -0.013 4.013
10 C 0.001 3.999
11 N -0.341 5.341
12 C -0.375 4.375
13 H 0.079 0.921
14 C -0.221 4.221
15 N -0.597 5.597
16 Si 0.763 3.237
17 H -0.196 1.196
18 H -0.237 1.237
19 H -0.197 1.197
20 C -0.020 4.020
21 C -0.011 4.011
22 H 0.062 0.938
23 H 0.102 0.898
24 H 0.086 0.914
25 H 0.098 0.902
26 H 0.125 0.875
27 H 0.083 0.917
28 H 0.087 0.913
29 H 0.116 0.884
30 H 0.099 0.901
31 H 0.122 0.878
32 H 0.045 0.955
33 H 0.098 0.902
34 H 0.071 0.929
35 H 0.042 0.958
36 H 0.085 0.915
37 H 0.116 0.884
38 H 0.098 0.902
Dipole moment (debyes) X Y Z Total
from point charges 9.489 -11.516 15.468 21.492
hybrid contribution -0.255 0.069 -1.059 1.092
sum 9.234 -11.446 14.409 20.589
Atomic orbital electron populations
1.22242 0.95244 1.03481 1.02287 1.21559 0.95051 0.80476 1.04783
1.57755 1.81664 1.23064 1.22309 1.21685 1.03445 0.95709 0.84980
1.01557 0.73136 0.72197 0.72996 1.93549 1.56852 1.63113 1.84942
1.93520 1.85416 1.57439 1.62397 1.57821 1.45344 1.25781 1.55087
1.22034 1.02655 0.80295 0.96347 1.21561 0.92318 0.96330 0.89675
1.44354 1.28093 1.11463 1.50209 1.18874 1.03533 1.18969 0.96138
0.92118 1.25854 0.97151 1.00321 0.98806 1.69918 1.15769 1.52829
1.21213 0.86105 0.80222 0.78502 0.78870 1.19554 1.23723 1.19693
1.21725 0.98633 0.85831 0.95854 1.21827 0.94037 0.96042 0.89177
0.93827 0.89765 0.91392 0.90205 0.87533 0.91694 0.91325 0.88432
0.90073 0.87823 0.95536 0.90206 0.92861 0.95763 0.91539 0.88368
0.90151
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -2.63 10.22 71.98 0.74 -1.89 16
2 C 0.11 1.73 6.38 86.38 0.55 2.28 16
3 N -1.01 -20.30 3.24 -539.11 -1.75 -22.05 16
4 C 0.09 1.27 10.31 127.77 1.32 2.59 16
5 S 2.79 81.33 6.06 -56.49 -0.34 80.99 16
6 O -1.00 -33.46 16.17 -128.00 -2.07 -35.53 16
7 O -1.00 -34.07 15.05 -128.00 -1.93 -36.00 16
8 N -1.00 -30.66 3.32 -511.42 -1.70 -32.35 16
9 C 0.11 3.34 6.63 86.57 0.57 3.91 16
10 C 0.13 4.83 6.69 86.56 0.58 5.41 16
11 N -0.62 -28.61 2.71 -697.34 -1.89 -30.50 16
12 C -0.25 -13.54 10.02 84.03 0.84 -12.70 16
13 H 0.06 3.60 8.06 -2.91 -0.02 3.57 16
14 C -0.03 -1.49 5.24 84.86 0.44 -1.04 16
15 N -0.95 -58.59 13.97 21.65 0.30 -58.29 16
16 Si 0.93 46.58 24.38 68.60 1.67 48.26 16
17 H -0.27 -12.54 6.62 99.48 0.66 -11.88 16
18 H -0.31 -15.62 7.11 99.48 0.71 -14.92 16
19 H -0.27 -13.48 6.69 99.48 0.67 -12.81 16
20 C 0.11 4.55 4.36 86.42 0.38 4.93 16
21 C 0.12 3.89 6.45 86.42 0.56 4.45 16
22 H 0.04 0.82 7.95 -2.39 -0.02 0.80 16
23 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16
24 H 0.07 0.92 7.98 -2.39 -0.02 0.91 16
25 H 0.08 1.53 6.83 -2.39 -0.02 1.51 16
26 H 0.11 1.16 8.12 -2.39 -0.02 1.14 16
27 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16
28 H 0.07 1.02 7.91 -2.39 -0.02 1.00 16
29 H 0.10 0.93 7.91 -2.39 -0.02 0.91 16
30 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16
31 H 0.10 2.57 7.07 -2.39 -0.02 2.55 16
32 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16
33 H 0.08 2.90 7.93 -2.39 -0.02 2.88 16
34 H 0.26 15.41 8.31 -92.71 -0.77 14.64 16
35 H 0.02 1.07 7.16 -2.39 -0.02 1.05 16
36 H 0.07 3.04 4.58 -2.39 -0.01 3.03 16
37 H 0.10 3.00 6.81 -2.38 -0.02 2.99 16
38 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16
Total: -1.00 -71.89 308.97 -0.77 -72.66
By element:
Atomic # 1 Polarization: 3.93 SS G_CDS: 0.95 Total: 4.88 kcal
Atomic # 6 Polarization: 1.95 SS G_CDS: 5.98 Total: 7.93 kcal
Atomic # 7 Polarization: -138.15 SS G_CDS: -5.03 Total: -143.18 kcal
Atomic # 8 Polarization: -67.54 SS G_CDS: -4.00 Total: -71.53 kcal
Atomic # 14 Polarization: 46.58 SS G_CDS: 1.67 Total: 48.26 kcal
Atomic # 16 Polarization: 81.33 SS G_CDS: -0.34 Total: 80.99 kcal
Total: -71.89 -0.77 -72.66 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000072709207.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 10.461 kcal
(2) G-P(sol) polarization free energy of solvation -71.886 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.425 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.771 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.657 kcal
(6) G-S(sol) free energy of system = (1) + (5) -62.196 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.39 seconds