Wall clock time and date at job start Mon Mar 30 2020 01:56:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46499 * 109.47080 * 2 1 4 4 C 1.46505 * 119.99938 * 82.97131 * 3 2 1 5 5 S 1.65595 * 120.00002 * 262.97102 * 3 2 1 6 6 O 1.42093 * 106.40502 * 208.86461 * 5 3 2 7 7 O 1.42103 * 106.40420 * 341.78876 * 5 3 2 8 8 N 1.65600 * 107.21875 * 95.32524 * 5 3 2 9 9 C 1.46962 * 120.59337 * 84.19736 * 8 5 3 10 10 C 1.53813 * 108.40099 * 124.75804 * 9 8 5 11 11 N 1.46970 * 108.57596 * 49.63499 * 10 9 8 12 12 C 1.36942 * 120.58938 * 124.66930 * 11 10 9 13 13 H 1.08002 * 120.00146 * 330.00544 * 12 11 10 14 14 C 1.38810 * 119.99769 * 150.00351 * 12 11 10 15 15 N 1.31614 * 120.00235 * 160.86635 * 14 12 11 16 16 Si 1.86808 * 120.00025 * 340.86162 * 14 12 11 17 17 H 1.48500 * 109.46831 * 92.29255 * 16 14 12 18 18 H 1.48496 * 109.47087 * 212.29499 * 16 14 12 19 19 H 1.48501 * 109.46882 * 332.29577 * 16 14 12 20 20 C 1.46960 * 118.81536 * 304.64881 * 11 10 9 21 21 C 1.46961 * 120.59623 * 264.47951 * 8 5 3 22 22 H 1.08997 * 109.47030 * 65.19682 * 1 2 3 23 23 H 1.08998 * 109.46956 * 185.19075 * 1 2 3 24 24 H 1.09002 * 109.47015 * 305.18669 * 1 2 3 25 25 H 1.08999 * 109.47137 * 239.99891 * 2 1 3 26 26 H 1.09001 * 109.46932 * 120.00098 * 2 1 3 27 27 H 1.08997 * 109.46654 * 90.00077 * 4 3 2 28 28 H 1.09000 * 109.46746 * 210.00197 * 4 3 2 29 29 H 1.08999 * 109.46921 * 330.00002 * 4 3 2 30 30 H 1.09000 * 109.61116 * 244.54187 * 9 8 5 31 31 H 1.09001 * 109.61312 * 5.05365 * 9 8 5 32 32 H 1.08994 * 109.74159 * 289.85170 * 10 9 8 33 33 H 1.08997 * 109.53408 * 169.30455 * 10 9 8 34 34 H 0.96997 * 120.00320 * 179.97438 * 15 14 12 35 35 H 1.09001 * 109.61206 * 295.48399 * 20 11 10 36 36 H 1.08999 * 109.74863 * 175.04931 * 20 11 10 37 37 H 1.09007 * 109.60902 * 354.94679 * 21 8 5 38 38 H 1.09004 * 109.61248 * 115.45748 * 21 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1162 2.1236 1.2592 5 16 2.4598 2.1033 -1.4233 6 8 3.4583 3.0597 -1.0953 7 8 2.6663 1.0537 -2.3587 8 7 1.1507 2.9610 -1.9645 9 6 0.8911 4.3206 -1.4707 10 6 0.7917 5.2657 -2.6801 11 7 -0.1348 4.6785 -3.6583 12 6 -1.2174 5.3878 -4.1058 13 1 -1.6878 6.1175 -3.4635 14 6 -1.7100 5.1687 -5.3849 15 7 -2.9340 5.5427 -5.6917 16 14 -0.6357 4.3432 -6.6710 17 1 -0.8749 2.8778 -6.6491 18 1 -0.9711 4.8796 -8.0144 19 1 0.7930 4.6161 -6.3715 20 6 0.1217 3.3168 -4.1479 21 6 0.2242 2.3739 -2.9426 22 1 -0.3633 0.4311 -0.9328 23 1 -0.3633 -1.0234 0.0930 24 1 -0.3633 0.5922 0.8399 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5139 0.8900 27 1 3.1020 1.9677 1.6972 28 1 1.9678 3.1862 1.0670 29 1 1.3514 1.7691 1.9503 30 1 -0.0458 4.3349 -0.9139 31 1 1.7091 4.6371 -0.8235 32 1 1.7750 5.3868 -3.1345 33 1 0.4143 6.2352 -2.3550 34 1 -3.2782 5.3900 -6.5856 35 1 1.0573 3.2991 -4.7069 36 1 -0.6964 2.9975 -4.7936 37 1 0.6016 1.4043 -3.2678 38 1 -0.7592 2.2528 -2.4882 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072709207.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:59 Heat of formation + Delta-G solvation = -62.195828 kcal Electronic energy + Delta-G solvation = -21472.075682 eV Core-core repulsion = 18283.663935 eV Total energy + Delta-G solvation = -3188.411747 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.125 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.45140 -38.53722 -37.62642 -37.01546 -35.66384 -33.35928 -32.26678 -31.58270 -28.37883 -27.10270 -25.17053 -24.66630 -23.54829 -21.95428 -20.03175 -19.31683 -18.54105 -18.18112 -17.41971 -17.05818 -16.23313 -16.00559 -15.65952 -15.42023 -15.16006 -15.07130 -14.80110 -14.57464 -14.20488 -13.79735 -13.64835 -13.50262 -13.29515 -13.19161 -13.12958 -12.96489 -12.83050 -12.44492 -12.38009 -12.23397 -12.01153 -11.81397 -11.62715 -11.55321 -10.87264 -10.24286 -10.06178 -8.86374 -8.18321 -5.52680 -0.53768 1.27215 1.40099 1.48251 1.79445 2.38781 2.39594 3.05020 3.19371 3.29129 3.65783 3.83197 4.13105 4.27290 4.31306 4.32740 4.35475 4.49444 4.52893 4.58370 4.64888 4.71377 4.79096 4.81669 4.92756 4.94961 4.97483 5.05811 5.22701 5.32159 5.39199 5.46550 5.74459 5.85977 6.12992 6.87959 7.58100 8.01288 9.01199 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.028313 B = 0.006091 C = 0.005989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.708838 B = 4596.094186 C = 4674.173861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.106 3.894 3 N -1.006 6.006 4 C 0.086 3.914 5 S 2.791 3.209 6 O -1.001 7.001 7 O -1.004 7.004 8 N -1.000 6.000 9 C 0.113 3.887 10 C 0.128 3.872 11 N -0.616 5.616 12 C -0.246 4.246 13 H 0.061 0.939 14 C -0.026 4.026 15 N -0.952 5.952 16 Si 0.934 3.066 17 H -0.269 1.269 18 H -0.309 1.309 19 H -0.272 1.272 20 C 0.106 3.894 21 C 0.116 3.884 22 H 0.043 0.957 23 H 0.084 0.916 24 H 0.067 0.933 25 H 0.080 0.920 26 H 0.106 0.894 27 H 0.064 0.936 28 H 0.068 0.932 29 H 0.097 0.903 30 H 0.081 0.919 31 H 0.104 0.896 32 H 0.027 0.973 33 H 0.080 0.920 34 H 0.262 0.738 35 H 0.024 0.976 36 H 0.067 0.933 37 H 0.098 0.902 38 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.725 -11.466 15.964 21.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.019 4.019 3 N -0.848 5.848 4 C -0.058 4.058 5 S 2.801 3.199 6 O -0.985 6.985 7 O -0.988 6.988 8 N -0.840 5.840 9 C -0.013 4.013 10 C 0.001 3.999 11 N -0.341 5.341 12 C -0.375 4.375 13 H 0.079 0.921 14 C -0.221 4.221 15 N -0.597 5.597 16 Si 0.763 3.237 17 H -0.196 1.196 18 H -0.237 1.237 19 H -0.197 1.197 20 C -0.020 4.020 21 C -0.011 4.011 22 H 0.062 0.938 23 H 0.102 0.898 24 H 0.086 0.914 25 H 0.098 0.902 26 H 0.125 0.875 27 H 0.083 0.917 28 H 0.087 0.913 29 H 0.116 0.884 30 H 0.099 0.901 31 H 0.122 0.878 32 H 0.045 0.955 33 H 0.098 0.902 34 H 0.071 0.929 35 H 0.042 0.958 36 H 0.085 0.915 37 H 0.116 0.884 38 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 9.489 -11.516 15.468 21.492 hybrid contribution -0.255 0.069 -1.059 1.092 sum 9.234 -11.446 14.409 20.589 Atomic orbital electron populations 1.22242 0.95244 1.03481 1.02287 1.21559 0.95051 0.80476 1.04783 1.57755 1.81664 1.23064 1.22309 1.21685 1.03445 0.95709 0.84980 1.01557 0.73136 0.72197 0.72996 1.93549 1.56852 1.63113 1.84942 1.93520 1.85416 1.57439 1.62397 1.57821 1.45344 1.25781 1.55087 1.22034 1.02655 0.80295 0.96347 1.21561 0.92318 0.96330 0.89675 1.44354 1.28093 1.11463 1.50209 1.18874 1.03533 1.18969 0.96138 0.92118 1.25854 0.97151 1.00321 0.98806 1.69918 1.15769 1.52829 1.21213 0.86105 0.80222 0.78502 0.78870 1.19554 1.23723 1.19693 1.21725 0.98633 0.85831 0.95854 1.21827 0.94037 0.96042 0.89177 0.93827 0.89765 0.91392 0.90205 0.87533 0.91694 0.91325 0.88432 0.90073 0.87823 0.95536 0.90206 0.92861 0.95763 0.91539 0.88368 0.90151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.63 10.22 71.98 0.74 -1.89 16 2 C 0.11 1.73 6.38 86.38 0.55 2.28 16 3 N -1.01 -20.30 3.24 -539.11 -1.75 -22.05 16 4 C 0.09 1.27 10.31 127.77 1.32 2.59 16 5 S 2.79 81.33 6.06 -56.49 -0.34 80.99 16 6 O -1.00 -33.46 16.17 -128.00 -2.07 -35.53 16 7 O -1.00 -34.07 15.05 -128.00 -1.93 -36.00 16 8 N -1.00 -30.66 3.32 -511.42 -1.70 -32.35 16 9 C 0.11 3.34 6.63 86.57 0.57 3.91 16 10 C 0.13 4.83 6.69 86.56 0.58 5.41 16 11 N -0.62 -28.61 2.71 -697.34 -1.89 -30.50 16 12 C -0.25 -13.54 10.02 84.03 0.84 -12.70 16 13 H 0.06 3.60 8.06 -2.91 -0.02 3.57 16 14 C -0.03 -1.49 5.24 84.86 0.44 -1.04 16 15 N -0.95 -58.59 13.97 21.65 0.30 -58.29 16 16 Si 0.93 46.58 24.38 68.60 1.67 48.26 16 17 H -0.27 -12.54 6.62 99.48 0.66 -11.88 16 18 H -0.31 -15.62 7.11 99.48 0.71 -14.92 16 19 H -0.27 -13.48 6.69 99.48 0.67 -12.81 16 20 C 0.11 4.55 4.36 86.42 0.38 4.93 16 21 C 0.12 3.89 6.45 86.42 0.56 4.45 16 22 H 0.04 0.82 7.95 -2.39 -0.02 0.80 16 23 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 24 H 0.07 0.92 7.98 -2.39 -0.02 0.91 16 25 H 0.08 1.53 6.83 -2.39 -0.02 1.51 16 26 H 0.11 1.16 8.12 -2.39 -0.02 1.14 16 27 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.07 1.02 7.91 -2.39 -0.02 1.00 16 29 H 0.10 0.93 7.91 -2.39 -0.02 0.91 16 30 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 31 H 0.10 2.57 7.07 -2.39 -0.02 2.55 16 32 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.08 2.90 7.93 -2.39 -0.02 2.88 16 34 H 0.26 15.41 8.31 -92.71 -0.77 14.64 16 35 H 0.02 1.07 7.16 -2.39 -0.02 1.05 16 36 H 0.07 3.04 4.58 -2.39 -0.01 3.03 16 37 H 0.10 3.00 6.81 -2.38 -0.02 2.99 16 38 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 Total: -1.00 -71.89 308.97 -0.77 -72.66 By element: Atomic # 1 Polarization: 3.93 SS G_CDS: 0.95 Total: 4.88 kcal Atomic # 6 Polarization: 1.95 SS G_CDS: 5.98 Total: 7.93 kcal Atomic # 7 Polarization: -138.15 SS G_CDS: -5.03 Total: -143.18 kcal Atomic # 8 Polarization: -67.54 SS G_CDS: -4.00 Total: -71.53 kcal Atomic # 14 Polarization: 46.58 SS G_CDS: 1.67 Total: 48.26 kcal Atomic # 16 Polarization: 81.33 SS G_CDS: -0.34 Total: 80.99 kcal Total: -71.89 -0.77 -72.66 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072709207.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.461 kcal (2) G-P(sol) polarization free energy of solvation -71.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds