Wall clock time and date at job start Mon Mar 30 2020 01:45:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 110.79684 * 2 1 4 4 C 1.54600 * 110.73985 * 236.71458 * 2 1 3 5 5 N 1.47910 * 102.62040 * 216.17634 * 4 2 1 6 6 C 1.46894 * 111.00176 * 149.18938 * 5 4 2 7 7 C 1.53002 * 109.47411 * 54.85534 * 6 5 4 8 8 C 1.53000 * 109.47195 * 174.70090 * 7 6 5 9 9 S 1.80999 * 109.46981 * 180.02562 * 8 7 6 10 10 C 1.76202 * 99.99881 * 180.02562 * 9 8 7 11 11 H 1.07998 * 119.99816 * 0.02562 * 10 9 8 12 12 C 1.38797 * 119.99911 * 179.97438 * 10 9 8 13 13 N 1.31637 * 119.99965 * 359.97438 * 12 10 9 14 14 Si 1.86797 * 120.00147 * 180.02562 * 12 10 9 15 15 H 1.48498 * 109.47314 * 59.99892 * 14 12 10 16 16 H 1.48498 * 109.47388 * 179.97438 * 14 12 10 17 17 H 1.48504 * 109.46894 * 300.00113 * 14 12 10 18 18 C 1.40043 * 107.85367 * 27.38627 * 5 4 2 19 19 C 1.39401 * 129.95554 * 161.73899 * 18 5 4 20 20 C 1.37906 * 120.19758 * 179.31524 * 19 18 5 21 21 C 1.38298 * 120.26213 * 359.97438 * 20 19 18 22 22 C 1.38305 * 119.88989 * 0.14063 * 21 20 19 23 23 C 1.37916 * 120.07627 * 0.02562 * 22 21 20 24 24 H 1.08997 * 109.47124 * 298.17274 * 1 2 3 25 25 H 1.09003 * 109.47086 * 58.16835 * 1 2 3 26 26 H 1.09003 * 109.47121 * 178.16644 * 1 2 3 27 27 H 1.08993 * 110.78005 * 97.88472 * 4 2 1 28 28 H 1.09004 * 110.93756 * 334.52779 * 4 2 1 29 29 H 1.09006 * 109.47242 * 174.86251 * 6 5 4 30 30 H 1.09003 * 109.47111 * 294.85270 * 6 5 4 31 31 H 1.08997 * 109.46858 * 294.70309 * 7 6 5 32 32 H 1.09000 * 109.46557 * 54.70146 * 7 6 5 33 33 H 1.08997 * 109.47149 * 300.00381 * 8 7 6 34 34 H 1.09005 * 109.46978 * 60.00211 * 8 7 6 35 35 H 0.96996 * 119.99555 * 180.02562 * 13 12 10 36 36 H 1.08003 * 119.89996 * 359.29446 * 19 18 5 37 37 H 1.08009 * 119.86842 * 179.97438 * 20 19 18 38 38 H 1.08006 * 120.05573 * 180.12402 * 21 20 19 39 39 H 1.07998 * 119.96086 * 180.27106 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9170 1.0190 0.0000 4 6 2.0775 -0.7935 -1.2086 5 7 3.2815 -1.4451 -0.6488 6 6 3.5351 -2.7349 -1.3045 7 6 3.6225 -2.5292 -2.8181 8 6 4.0168 -3.8460 -3.4899 9 16 4.1209 -3.6024 -5.2804 10 6 4.5768 -5.2281 -5.7843 11 1 4.7041 -6.0064 -5.0465 12 6 4.7712 -5.5087 -7.1297 13 7 4.6145 -4.5604 -8.0291 14 14 5.2538 -7.2323 -7.6641 15 1 4.2017 -8.1931 -7.2457 16 1 5.3987 -7.2702 -9.1415 17 1 6.5442 -7.6040 -7.0299 18 6 3.0788 -1.6126 0.7267 19 6 3.7280 -2.4508 1.6318 20 6 3.3704 -2.4432 2.9637 21 6 2.3662 -1.6041 3.4109 22 6 1.7156 -0.7713 2.5188 23 6 2.0671 -0.7775 1.1852 24 1 -0.3633 0.4852 0.9059 25 1 -0.3633 0.5420 -0.8731 26 1 -0.3633 -1.0272 -0.0329 27 1 2.3452 -0.1210 -2.0235 28 1 1.3559 -1.5380 -1.5449 29 1 4.4746 -3.1497 -0.9393 30 1 2.7214 -3.4239 -1.0778 31 1 2.6537 -2.2038 -3.1970 32 1 4.3727 -1.7698 -3.0387 33 1 4.9855 -4.1714 -3.1109 34 1 3.2666 -4.6054 -3.2692 35 1 4.7500 -4.7566 -8.9693 36 1 4.5132 -3.1084 1.2888 37 1 3.8767 -3.0951 3.6603 38 1 2.0902 -1.5995 4.4551 39 1 0.9342 -0.1124 2.8676 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000074981704.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:51 Heat of formation + Delta-G solvation = 16.804958 kcal Electronic energy + Delta-G solvation = -18419.123211 eV Core-core repulsion = 15644.986458 eV Total energy + Delta-G solvation = -2774.136753 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 277.120 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.95151 -37.11775 -34.78721 -32.57797 -32.39854 -29.96297 -29.33998 -27.06363 -25.65949 -24.52016 -22.91361 -21.57024 -21.06912 -20.02640 -17.49870 -16.85319 -15.94375 -15.86222 -15.45806 -15.04239 -14.81179 -14.26687 -14.01982 -13.69729 -13.38315 -13.18715 -12.91310 -12.74965 -12.29483 -12.22122 -12.01489 -11.81610 -11.36004 -11.26454 -11.10083 -11.05378 -10.85410 -10.75918 -10.67740 -10.52778 -9.90308 -9.54083 -9.05881 -8.91159 -8.32824 -7.77819 -6.54213 -6.23496 -3.94104 1.27109 1.30504 3.20449 3.22897 3.27395 3.44567 3.60533 3.83023 4.21571 4.37128 4.41082 4.81355 4.89235 4.99507 5.06235 5.12389 5.15611 5.22926 5.30406 5.37682 5.41478 5.44323 5.50078 5.61023 5.65207 5.71450 5.79351 5.80743 5.90116 6.01435 6.04938 6.21371 6.27581 6.37836 6.43678 6.52127 6.62024 6.70281 6.93865 7.18438 7.59561 8.35676 9.22685 10.84674 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.032385 B = 0.003157 C = 0.002951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.390788 B = 8865.710688 C = 9487.390780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.057 4.057 3 H 0.092 0.908 4 C 0.049 3.951 5 N -0.475 5.475 6 C 0.054 3.946 7 C -0.098 4.098 8 C -0.113 4.113 9 S -0.130 6.130 10 C -0.518 4.518 11 H 0.072 0.928 12 C 0.071 3.929 13 N -0.870 5.870 14 Si 0.919 3.081 15 H -0.274 1.274 16 H -0.283 1.283 17 H -0.274 1.274 18 C 0.104 3.896 19 C -0.141 4.141 20 C -0.095 4.095 21 C -0.152 4.152 22 C -0.080 4.080 23 C -0.139 4.139 24 H 0.058 0.942 25 H 0.062 0.938 26 H 0.057 0.943 27 H 0.097 0.903 28 H 0.065 0.935 29 H 0.080 0.920 30 H 0.044 0.956 31 H 0.067 0.933 32 H 0.076 0.924 33 H 0.061 0.939 34 H 0.059 0.941 35 H 0.268 0.732 36 H 0.121 0.879 37 H 0.123 0.877 38 H 0.121 0.879 39 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.667 7.723 20.287 22.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.075 4.075 3 H 0.110 0.890 4 C -0.077 4.077 5 N -0.187 5.187 6 C -0.074 4.074 7 C -0.137 4.137 8 C -0.262 4.262 9 S 0.098 5.902 10 C -0.666 4.666 11 H 0.090 0.910 12 C -0.138 4.138 13 N -0.506 5.506 14 Si 0.745 3.255 15 H -0.199 1.199 16 H -0.208 1.208 17 H -0.199 1.199 18 C 0.005 3.995 19 C -0.162 4.162 20 C -0.113 4.113 21 C -0.171 4.171 22 C -0.098 4.098 23 C -0.142 4.142 24 H 0.077 0.923 25 H 0.081 0.919 26 H 0.076 0.924 27 H 0.116 0.884 28 H 0.084 0.916 29 H 0.099 0.901 30 H 0.063 0.937 31 H 0.086 0.914 32 H 0.095 0.905 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.139 0.861 37 H 0.141 0.859 38 H 0.139 0.861 39 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -6.374 9.001 19.230 22.169 hybrid contribution 0.092 -2.651 0.461 2.692 sum -6.282 6.350 19.692 21.623 Atomic orbital electron populations 1.21770 0.93769 1.02250 1.02065 1.20923 0.96085 0.99168 0.91338 0.88989 1.23397 0.89330 0.97640 0.97326 1.60578 1.35288 1.22368 1.00513 1.22432 1.01615 0.87966 0.95342 1.21354 1.02706 0.98002 0.91629 1.23216 1.02512 0.98545 1.01919 1.84616 1.90948 1.18723 0.95919 1.22651 1.54051 0.94876 0.94993 0.90999 1.25014 0.94909 0.98277 0.95560 1.70013 1.46412 1.32502 1.01626 0.86221 0.79150 0.82636 0.77515 1.19939 1.20798 1.19906 1.19749 0.94183 0.95315 0.90233 1.20508 1.02163 1.00692 0.92806 1.20864 0.97121 0.98541 0.94806 1.20943 0.98342 0.98523 0.99312 1.20332 0.99362 0.98652 0.91470 1.20515 0.98253 1.00579 0.94883 0.92295 0.91941 0.92426 0.88439 0.91648 0.90129 0.93739 0.91434 0.90521 0.91984 0.92219 0.92234 0.86111 0.85917 0.86117 0.86410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.18 9.12 37.16 0.34 -0.84 16 2 C -0.06 -0.58 3.67 -90.50 -0.33 -0.91 16 3 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 4 C 0.05 0.57 5.06 -2.43 -0.01 0.56 16 5 N -0.47 -6.39 5.14 -169.01 -0.87 -7.26 16 6 C 0.05 0.75 4.55 -3.83 -0.02 0.74 16 7 C -0.10 -1.60 4.89 -26.73 -0.13 -1.74 16 8 C -0.11 -2.27 5.67 37.16 0.21 -2.06 16 9 S -0.13 -3.41 21.44 -107.50 -2.30 -5.71 16 10 C -0.52 -14.89 9.50 30.94 0.29 -14.60 16 11 H 0.07 2.00 7.80 -52.49 -0.41 1.59 16 12 C 0.07 2.04 5.49 -17.43 -0.10 1.94 16 13 N -0.87 -26.05 13.22 55.49 0.73 -25.32 16 14 Si 0.92 21.57 29.55 -169.99 -5.02 16.55 16 15 H -0.27 -6.30 7.11 56.52 0.40 -5.89 16 16 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 17 H -0.27 -6.30 7.11 56.52 0.40 -5.89 16 18 C 0.10 1.36 5.94 -83.40 -0.50 0.86 16 19 C -0.14 -1.68 9.54 -39.27 -0.37 -2.05 16 20 C -0.09 -0.96 10.02 -39.68 -0.40 -1.36 16 21 C -0.15 -1.46 10.06 -39.53 -0.40 -1.86 16 22 C -0.08 -0.81 9.88 -39.67 -0.39 -1.20 16 23 C -0.14 -1.62 5.66 -104.04 -0.59 -2.21 16 24 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.06 0.52 8.11 -51.93 -0.42 0.10 16 27 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 28 H 0.07 0.77 7.32 -51.93 -0.38 0.39 16 29 H 0.08 1.11 7.56 -51.93 -0.39 0.72 16 30 H 0.04 0.62 8.11 -51.93 -0.42 0.20 16 31 H 0.07 1.08 7.07 -51.93 -0.37 0.72 16 32 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 33 H 0.06 1.24 8.14 -51.92 -0.42 0.82 16 34 H 0.06 1.19 8.14 -51.91 -0.42 0.77 16 35 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 36 H 0.12 1.35 7.52 -52.48 -0.39 0.95 16 37 H 0.12 0.96 8.06 -52.48 -0.42 0.54 16 38 H 0.12 0.87 8.06 -52.48 -0.42 0.44 16 39 H 0.12 0.95 8.06 -52.49 -0.42 0.52 16 LS Contribution 332.71 15.07 5.01 5.01 Total: -1.00 -31.37 332.71 -10.99 -42.36 By element: Atomic # 1 Polarization: 5.25 SS G_CDS: -6.15 Total: -0.90 kcal Atomic # 6 Polarization: -22.34 SS G_CDS: -2.39 Total: -24.73 kcal Atomic # 7 Polarization: -32.44 SS G_CDS: -0.13 Total: -32.58 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Atomic # 16 Polarization: -3.41 SS G_CDS: -2.30 Total: -5.71 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -31.37 -10.99 -42.36 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074981704.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.166 kcal (2) G-P(sol) polarization free energy of solvation -31.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.361 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds