Wall clock time and date at job start Mon Mar 30 2020 01:45:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 110.79684 * 2 1 4 4 C 1.54600 * 110.73985 * 236.71458 * 2 1 3 5 5 N 1.47910 * 102.62040 * 216.17634 * 4 2 1 6 6 C 1.46894 * 111.00176 * 149.18938 * 5 4 2 7 7 C 1.53002 * 109.47411 * 54.85534 * 6 5 4 8 8 C 1.53000 * 109.47195 * 174.70090 * 7 6 5 9 9 S 1.80999 * 109.46981 * 180.02562 * 8 7 6 10 10 C 1.76202 * 99.99881 * 180.02562 * 9 8 7 11 11 H 1.07998 * 119.99816 * 0.02562 * 10 9 8 12 12 C 1.38797 * 119.99911 * 179.97438 * 10 9 8 13 13 N 1.31637 * 119.99965 * 359.97438 * 12 10 9 14 14 Si 1.86797 * 120.00147 * 180.02562 * 12 10 9 15 15 H 1.48498 * 109.47314 * 59.99892 * 14 12 10 16 16 H 1.48498 * 109.47388 * 179.97438 * 14 12 10 17 17 H 1.48504 * 109.46894 * 300.00113 * 14 12 10 18 18 C 1.40043 * 107.85367 * 27.38627 * 5 4 2 19 19 C 1.39401 * 129.95554 * 161.73899 * 18 5 4 20 20 C 1.37906 * 120.19758 * 179.31524 * 19 18 5 21 21 C 1.38298 * 120.26213 * 359.97438 * 20 19 18 22 22 C 1.38305 * 119.88989 * 0.14063 * 21 20 19 23 23 C 1.37916 * 120.07627 * 0.02562 * 22 21 20 24 24 H 1.08997 * 109.47124 * 298.17274 * 1 2 3 25 25 H 1.09003 * 109.47086 * 58.16835 * 1 2 3 26 26 H 1.09003 * 109.47121 * 178.16644 * 1 2 3 27 27 H 1.08993 * 110.78005 * 97.88472 * 4 2 1 28 28 H 1.09004 * 110.93756 * 334.52779 * 4 2 1 29 29 H 1.09006 * 109.47242 * 174.86251 * 6 5 4 30 30 H 1.09003 * 109.47111 * 294.85270 * 6 5 4 31 31 H 1.08997 * 109.46858 * 294.70309 * 7 6 5 32 32 H 1.09000 * 109.46557 * 54.70146 * 7 6 5 33 33 H 1.08997 * 109.47149 * 300.00381 * 8 7 6 34 34 H 1.09005 * 109.46978 * 60.00211 * 8 7 6 35 35 H 0.96996 * 119.99555 * 180.02562 * 13 12 10 36 36 H 1.08003 * 119.89996 * 359.29446 * 19 18 5 37 37 H 1.08009 * 119.86842 * 179.97438 * 20 19 18 38 38 H 1.08006 * 120.05573 * 180.12402 * 21 20 19 39 39 H 1.07998 * 119.96086 * 180.27106 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9170 1.0190 0.0000 4 6 2.0775 -0.7935 -1.2086 5 7 3.2815 -1.4451 -0.6488 6 6 3.5351 -2.7349 -1.3045 7 6 3.6225 -2.5292 -2.8181 8 6 4.0168 -3.8460 -3.4899 9 16 4.1209 -3.6024 -5.2804 10 6 4.5768 -5.2281 -5.7843 11 1 4.7041 -6.0064 -5.0465 12 6 4.7712 -5.5087 -7.1297 13 7 4.6145 -4.5604 -8.0291 14 14 5.2538 -7.2323 -7.6641 15 1 4.2017 -8.1931 -7.2457 16 1 5.3987 -7.2702 -9.1415 17 1 6.5442 -7.6040 -7.0299 18 6 3.0788 -1.6126 0.7267 19 6 3.7280 -2.4508 1.6318 20 6 3.3704 -2.4432 2.9637 21 6 2.3662 -1.6041 3.4109 22 6 1.7156 -0.7713 2.5188 23 6 2.0671 -0.7775 1.1852 24 1 -0.3633 0.4852 0.9059 25 1 -0.3633 0.5420 -0.8731 26 1 -0.3633 -1.0272 -0.0329 27 1 2.3452 -0.1210 -2.0235 28 1 1.3559 -1.5380 -1.5449 29 1 4.4746 -3.1497 -0.9393 30 1 2.7214 -3.4239 -1.0778 31 1 2.6537 -2.2038 -3.1970 32 1 4.3727 -1.7698 -3.0387 33 1 4.9855 -4.1714 -3.1109 34 1 3.2666 -4.6054 -3.2692 35 1 4.7500 -4.7566 -8.9693 36 1 4.5132 -3.1084 1.2888 37 1 3.8767 -3.0951 3.6603 38 1 2.0902 -1.5995 4.4551 39 1 0.9342 -0.1124 2.8676 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000074981704.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:51 Heat of formation + Delta-G solvation = 0.018786 kcal Electronic energy + Delta-G solvation = -18419.851114 eV Core-core repulsion = 15644.986458 eV Total energy + Delta-G solvation = -2774.864656 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 277.120 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.82887 -38.02164 -35.80518 -34.62204 -33.67069 -30.74767 -30.27530 -28.16340 -27.68665 -25.71345 -23.74687 -22.74931 -21.94973 -21.01361 -19.56406 -17.76170 -16.98926 -16.90756 -16.80458 -16.44710 -16.07083 -15.92592 -14.96233 -14.83366 -14.64279 -14.37434 -13.95336 -13.68897 -13.55082 -13.31301 -13.13546 -12.95211 -12.93022 -12.83282 -12.54010 -12.37203 -12.11457 -11.92639 -11.84535 -11.56787 -11.45757 -11.14850 -10.79071 -10.35502 -9.71316 -8.69922 -8.67744 -8.38738 -6.15473 0.45042 0.48457 1.30174 1.40095 1.46712 1.70490 2.26570 2.62898 2.95022 2.95505 3.28917 3.53484 3.57511 3.88193 3.97376 4.09101 4.15273 4.17663 4.27723 4.37455 4.39027 4.45332 4.58493 4.66981 4.68200 4.70953 4.73696 4.84344 4.91456 5.05069 5.10581 5.14532 5.20964 5.29524 5.38021 5.43792 5.57671 5.64991 5.79149 5.99947 6.16448 6.29262 7.03314 8.70503 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.032385 B = 0.003157 C = 0.002951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.390788 B = 8865.710688 C = 9487.390780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.052 4.052 3 H 0.096 0.904 4 C 0.044 3.956 5 N -0.485 5.485 6 C 0.067 3.933 7 C -0.084 4.084 8 C -0.088 4.088 9 S -0.192 6.192 10 C -0.541 4.541 11 H 0.073 0.927 12 C 0.016 3.984 13 N -0.907 5.907 14 Si 0.994 3.006 15 H -0.264 1.264 16 H -0.274 1.274 17 H -0.264 1.264 18 C 0.074 3.926 19 C -0.157 4.157 20 C -0.100 4.100 21 C -0.149 4.149 22 C -0.085 4.085 23 C -0.149 4.149 24 H 0.073 0.927 25 H 0.070 0.930 26 H 0.048 0.952 27 H 0.097 0.903 28 H 0.061 0.939 29 H 0.081 0.919 30 H 0.045 0.955 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.063 0.937 34 H 0.062 0.938 35 H 0.272 0.728 36 H 0.120 0.880 37 H 0.145 0.855 38 H 0.149 0.851 39 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.214 7.255 22.241 24.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.071 4.071 3 H 0.114 0.886 4 C -0.082 4.082 5 N -0.199 5.199 6 C -0.061 4.061 7 C -0.123 4.123 8 C -0.238 4.238 9 S 0.036 5.964 10 C -0.689 4.689 11 H 0.091 0.909 12 C -0.189 4.189 13 N -0.544 5.544 14 Si 0.816 3.184 15 H -0.189 1.189 16 H -0.199 1.199 17 H -0.189 1.189 18 C -0.025 4.025 19 C -0.178 4.178 20 C -0.118 4.118 21 C -0.167 4.167 22 C -0.103 4.103 23 C -0.152 4.152 24 H 0.092 0.908 25 H 0.089 0.911 26 H 0.068 0.932 27 H 0.115 0.885 28 H 0.079 0.921 29 H 0.100 0.900 30 H 0.063 0.937 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.138 0.862 37 H 0.163 0.837 38 H 0.167 0.833 39 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -6.927 8.545 21.204 23.888 hybrid contribution 0.240 -2.448 -0.013 2.460 sum -6.687 6.097 21.192 23.043 Atomic orbital electron populations 1.21737 0.92280 1.02046 1.03245 1.20923 0.97232 0.98835 0.90070 0.88552 1.23472 0.88919 0.97693 0.98132 1.60601 1.36409 1.21709 1.01173 1.22195 1.01740 0.88842 0.93341 1.21196 1.02376 0.95571 0.93112 1.23127 1.02789 1.00686 0.97160 1.84610 1.91104 1.18945 1.01699 1.23019 1.54542 0.95602 0.95726 0.90908 1.26074 0.94455 1.02963 0.95437 1.70148 1.47205 1.34924 1.02078 0.85067 0.79159 0.76854 0.77356 1.18890 1.19896 1.18922 1.19957 0.95668 0.96921 0.89928 1.20716 1.02428 1.00932 0.93698 1.21191 0.97310 0.98881 0.94415 1.21348 0.97371 0.97362 1.00656 1.20674 0.99797 0.98939 0.90906 1.20777 0.98026 1.00518 0.95904 0.90841 0.91074 0.93247 0.88461 0.92069 0.90040 0.93706 0.91233 0.91263 0.91833 0.91902 0.91906 0.86239 0.83680 0.83309 0.84126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.04 9.12 71.98 0.66 -1.39 16 2 C -0.05 -1.01 3.67 -10.72 -0.04 -1.05 16 3 H 0.10 1.77 8.14 -2.38 -0.02 1.75 16 4 C 0.04 1.01 5.06 86.65 0.44 1.45 16 5 N -0.49 -13.00 5.14 -688.64 -3.54 -16.54 16 6 C 0.07 1.86 4.55 86.31 0.39 2.26 16 7 C -0.08 -2.76 4.89 30.60 0.15 -2.61 16 8 C -0.09 -3.58 5.67 71.98 0.41 -3.18 16 9 S -0.19 -10.32 21.44 -56.49 -1.21 -11.53 16 10 C -0.54 -31.54 9.50 67.95 0.65 -30.89 16 11 H 0.07 4.08 7.80 -2.91 -0.02 4.05 16 12 C 0.02 0.90 5.49 84.86 0.47 1.37 16 13 N -0.91 -55.08 13.22 21.65 0.29 -54.79 16 14 Si 0.99 44.08 29.55 68.60 2.03 46.11 16 15 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 16 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 17 H -0.26 -11.25 7.11 99.48 0.71 -10.55 16 18 C 0.07 1.87 5.94 38.28 0.23 2.09 16 19 C -0.16 -3.61 9.54 22.47 0.21 -3.40 16 20 C -0.10 -1.82 10.02 22.21 0.22 -1.59 16 21 C -0.15 -2.42 10.06 22.30 0.22 -2.20 16 22 C -0.08 -1.51 9.88 22.21 0.22 -1.29 16 23 C -0.15 -3.27 5.66 -19.49 -0.11 -3.38 16 24 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 25 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 26 H 0.05 0.83 8.11 -2.39 -0.02 0.81 16 27 H 0.10 2.19 8.14 -2.39 -0.02 2.17 16 28 H 0.06 1.44 7.32 -2.39 -0.02 1.42 16 29 H 0.08 2.24 7.56 -2.38 -0.02 2.22 16 30 H 0.04 1.24 8.11 -2.39 -0.02 1.22 16 31 H 0.07 2.26 7.07 -2.39 -0.02 2.24 16 32 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 33 H 0.06 2.55 8.14 -2.40 -0.02 2.53 16 34 H 0.06 2.51 8.14 -2.39 -0.02 2.49 16 35 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 36 H 0.12 2.64 7.52 -2.91 -0.02 2.62 16 37 H 0.15 1.90 8.06 -2.91 -0.02 1.87 16 38 H 0.15 1.55 8.06 -2.91 -0.02 1.53 16 39 H 0.14 1.79 8.06 -2.91 -0.02 1.77 16 Total: -1.00 -67.86 332.71 2.69 -65.17 By element: Atomic # 1 Polarization: 14.39 SS G_CDS: 1.01 Total: 15.39 kcal Atomic # 6 Polarization: -47.92 SS G_CDS: 4.12 Total: -43.81 kcal Atomic # 7 Polarization: -68.08 SS G_CDS: -3.25 Total: -71.34 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.11 kcal Atomic # 16 Polarization: -10.32 SS G_CDS: -1.21 Total: -11.53 kcal Total: -67.86 2.69 -65.17 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074981704.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.190 kcal (2) G-P(sol) polarization free energy of solvation -67.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.171 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds