Wall clock time and date at job start Mon Mar 30 2020 01:45:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 110.66177 * 2 1 4 4 C 1.54602 * 110.89343 * 123.30085 * 2 1 3 5 5 N 1.47907 * 102.62598 * 143.94286 * 4 2 1 6 6 C 1.46901 * 111.00270 * 94.52016 * 5 4 2 7 7 C 1.53000 * 109.46769 * 309.90382 * 6 5 4 8 8 C 1.53001 * 109.46886 * 180.02562 * 7 6 5 9 9 S 1.81002 * 109.47152 * 179.97438 * 8 7 6 10 10 C 1.76198 * 100.00092 * 179.97438 * 9 8 7 11 11 H 1.07999 * 119.99945 * 359.97438 * 10 9 8 12 12 C 1.38802 * 120.00251 * 180.02562 * 10 9 8 13 13 N 1.31634 * 119.99707 * 359.97438 * 12 10 9 14 14 Si 1.86796 * 120.00286 * 180.02562 * 12 10 9 15 15 H 1.48502 * 109.47120 * 359.97438 * 14 12 10 16 16 H 1.48497 * 109.47665 * 119.99602 * 14 12 10 17 17 H 1.48503 * 109.46798 * 239.99988 * 14 12 10 18 18 C 1.40038 * 107.88146 * 332.70566 * 5 4 2 19 19 C 1.39401 * 129.96074 * 198.38192 * 18 5 4 20 20 C 1.37905 * 120.19964 * 180.33255 * 19 18 5 21 21 C 1.38308 * 120.26711 * 359.97438 * 20 19 18 22 22 C 1.38303 * 119.88178 * 359.86571 * 21 20 19 23 23 C 1.37923 * 120.07688 * 0.02562 * 22 21 20 24 24 H 1.08997 * 109.47373 * 181.74203 * 1 2 3 25 25 H 1.09000 * 109.46956 * 301.74303 * 1 2 3 26 26 H 1.08998 * 109.46695 * 61.74466 * 1 2 3 27 27 H 1.08998 * 110.77976 * 25.65768 * 4 2 1 28 28 H 1.09000 * 110.77848 * 262.22675 * 4 2 1 29 29 H 1.09002 * 109.47401 * 189.90089 * 6 5 4 30 30 H 1.09001 * 109.46874 * 69.90102 * 6 5 4 31 31 H 1.09001 * 109.47194 * 299.99524 * 7 6 5 32 32 H 1.08992 * 109.47399 * 59.99697 * 7 6 5 33 33 H 1.09001 * 109.47109 * 299.99380 * 8 7 6 34 34 H 1.09002 * 109.47508 * 59.99571 * 8 7 6 35 35 H 0.96996 * 119.99880 * 180.02562 * 13 12 10 36 36 H 1.07999 * 119.90087 * 0.29588 * 19 18 5 37 37 H 1.08001 * 119.87120 * 179.97438 * 20 19 18 38 38 H 1.07994 * 120.06279 * 179.83994 * 21 20 19 39 39 H 1.07997 * 119.96229 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9146 1.0198 0.0000 4 6 2.0814 -0.7930 1.2072 5 7 3.2868 -1.4404 0.6454 6 6 4.4874 -0.6357 0.9081 7 6 4.2329 0.8127 0.4861 8 6 5.4836 1.6507 0.7591 9 16 5.1828 3.3641 0.2592 10 6 6.7381 4.0811 0.6732 11 1 7.5180 3.4691 1.1015 12 6 6.9607 5.4329 0.4498 13 7 6.0099 6.1790 -0.0718 14 14 8.6098 6.1929 0.8881 15 1 9.5011 5.1489 1.4546 16 1 9.2312 6.7655 -0.3330 17 1 8.4079 7.2687 1.8917 18 6 3.0845 -1.6056 -0.7304 19 6 3.7343 -2.4418 -1.6368 20 6 3.3722 -2.4372 -2.9675 21 6 2.3619 -1.6039 -3.4121 22 6 1.7101 -0.7737 -2.5184 23 6 2.0670 -0.7761 -1.1862 24 1 -0.3634 -1.0271 0.0312 25 1 -0.3633 0.5407 0.8739 26 1 -0.3633 0.4865 -0.9052 27 1 1.3611 -1.5400 1.5407 28 1 2.3481 -0.1204 2.0224 29 1 5.3259 -1.0379 0.3395 30 1 4.7210 -0.6685 1.9723 31 1 3.9993 0.8454 -0.5781 32 1 3.3944 1.2148 1.0546 33 1 5.7176 1.6181 1.8232 34 1 6.3218 1.2484 0.1902 35 1 6.1655 7.1235 -0.2282 36 1 4.5242 -3.0948 -1.2961 37 1 3.8795 -3.0870 -3.6653 38 1 2.0827 -1.6011 -4.4553 39 1 0.9207 -0.1227 -2.8641 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000074981705.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:53 Heat of formation + Delta-G solvation = 25.381050 kcal Electronic energy + Delta-G solvation = -19021.962678 eV Core-core repulsion = 16248.197812 eV Total energy + Delta-G solvation = -2773.764866 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 277.120 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.14465 -37.13671 -34.13719 -32.49918 -32.33984 -29.88064 -29.30253 -26.76103 -25.67827 -24.60418 -23.00103 -21.71440 -20.38002 -20.28955 -17.55069 -16.94924 -15.92282 -15.44572 -15.16738 -14.88628 -14.80940 -14.26631 -13.86327 -13.68107 -13.36604 -13.12296 -12.73394 -12.57496 -12.21806 -12.16004 -11.82274 -11.76872 -11.52709 -11.13804 -11.09027 -10.99090 -10.80291 -10.67737 -10.54126 -10.37607 -9.78288 -9.26137 -9.07356 -8.75685 -8.32285 -7.80880 -6.53976 -6.23794 -3.94013 1.35423 1.43298 3.20305 3.21838 3.29433 3.55237 3.66759 3.83309 4.21549 4.51055 4.73010 4.89214 5.02155 5.07115 5.12212 5.14134 5.27456 5.33407 5.40944 5.45215 5.55542 5.56462 5.63178 5.64883 5.76301 5.80859 5.86773 5.93079 6.00623 6.08535 6.23333 6.30573 6.38211 6.49841 6.51485 6.55587 6.69631 6.76911 6.96488 7.32378 7.60156 8.36191 9.22792 10.84521 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.023605 B = 0.004022 C = 0.003954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.896247 B = 6959.477487 C = 7080.266920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.090 4.090 3 H 0.101 0.899 4 C 0.052 3.948 5 N -0.493 5.493 6 C 0.059 3.941 7 C -0.134 4.134 8 C -0.110 4.110 9 S -0.135 6.135 10 C -0.515 4.515 11 H 0.073 0.927 12 C 0.071 3.929 13 N -0.870 5.870 14 Si 0.918 3.082 15 H -0.271 1.271 16 H -0.280 1.280 17 H -0.280 1.280 18 C 0.094 3.906 19 C -0.114 4.114 20 C -0.108 4.108 21 C -0.135 4.135 22 C -0.088 4.088 23 C -0.125 4.125 24 H 0.055 0.945 25 H 0.060 0.940 26 H 0.057 0.943 27 H 0.086 0.914 28 H 0.088 0.912 29 H 0.076 0.924 30 H 0.082 0.918 31 H 0.069 0.931 32 H 0.072 0.928 33 H 0.060 0.940 34 H 0.059 0.941 35 H 0.266 0.734 36 H 0.121 0.879 37 H 0.123 0.877 38 H 0.122 0.878 39 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.179 -16.121 -1.908 18.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.109 4.109 3 H 0.119 0.881 4 C -0.075 4.075 5 N -0.209 5.209 6 C -0.068 4.068 7 C -0.173 4.173 8 C -0.259 4.259 9 S 0.094 5.906 10 C -0.663 4.663 11 H 0.091 0.909 12 C -0.138 4.138 13 N -0.506 5.506 14 Si 0.745 3.255 15 H -0.196 1.196 16 H -0.206 1.206 17 H -0.206 1.206 18 C -0.002 4.002 19 C -0.134 4.134 20 C -0.126 4.126 21 C -0.153 4.153 22 C -0.107 4.107 23 C -0.128 4.128 24 H 0.074 0.926 25 H 0.079 0.921 26 H 0.077 0.923 27 H 0.104 0.896 28 H 0.107 0.893 29 H 0.095 0.905 30 H 0.100 0.900 31 H 0.087 0.913 32 H 0.090 0.910 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.076 0.924 36 H 0.139 0.861 37 H 0.141 0.859 38 H 0.140 0.860 39 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -10.034 -15.951 -2.097 18.961 hybrid contribution 2.081 0.765 0.372 2.248 sum -7.952 -15.186 -1.725 17.229 Atomic orbital electron populations 1.21678 0.93683 1.01813 1.02145 1.21581 0.96765 1.00314 0.92248 0.88118 1.23240 0.90887 0.96721 0.96640 1.60451 1.04578 1.46566 1.09255 1.22441 0.91162 0.91106 1.02064 1.22161 0.98388 0.94428 1.02338 1.23197 0.99101 1.00930 1.02704 1.84607 1.23734 0.98928 1.83376 1.22731 0.98873 0.96645 1.48088 0.90918 1.25015 0.97882 0.96144 0.94737 1.70035 1.32418 1.06733 1.41395 0.86115 0.82165 0.79014 0.78254 1.19590 1.20555 1.20555 1.19561 0.96257 0.95360 0.89039 1.20455 1.01135 0.99440 0.92350 1.20877 0.97519 0.99292 0.94938 1.21013 0.97361 0.97649 0.99307 1.20389 0.99786 0.98832 0.91654 1.20984 0.99702 0.97494 0.94578 0.92618 0.92077 0.92344 0.89587 0.89342 0.90530 0.90011 0.91279 0.90999 0.92091 0.92209 0.92375 0.86129 0.85880 0.86001 0.86346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.36 9.12 37.16 0.34 -1.02 16 2 C -0.09 -1.11 2.74 -90.50 -0.25 -1.36 16 3 H 0.10 1.42 5.96 -51.93 -0.31 1.11 16 4 C 0.05 0.62 6.05 -2.43 -0.01 0.60 16 5 N -0.49 -6.60 5.33 -169.02 -0.90 -7.50 16 6 C 0.06 0.83 5.30 -3.82 -0.02 0.81 16 7 C -0.13 -2.22 3.48 -26.73 -0.09 -2.31 16 8 C -0.11 -2.24 5.67 37.16 0.21 -2.03 16 9 S -0.13 -3.55 21.44 -107.50 -2.30 -5.85 16 10 C -0.52 -14.89 9.50 30.94 0.29 -14.60 16 11 H 0.07 2.04 7.80 -52.49 -0.41 1.64 16 12 C 0.07 2.03 5.49 -17.43 -0.10 1.94 16 13 N -0.87 -26.14 13.22 55.49 0.73 -25.40 16 14 Si 0.92 21.65 29.55 -169.99 -5.02 16.63 16 15 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 16 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 17 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 18 C 0.09 1.29 5.02 -83.41 -0.42 0.88 16 19 C -0.11 -1.44 10.07 -39.27 -0.40 -1.84 16 20 C -0.11 -1.22 10.02 -39.68 -0.40 -1.62 16 21 C -0.13 -1.53 10.06 -39.53 -0.40 -1.93 16 22 C -0.09 -1.09 9.88 -39.67 -0.39 -1.48 16 23 C -0.13 -1.68 4.83 -104.04 -0.50 -2.18 16 24 H 0.05 0.53 8.11 -51.93 -0.42 0.11 16 25 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.09 0.92 7.90 -51.93 -0.41 0.51 16 28 H 0.09 1.01 6.88 -51.93 -0.36 0.65 16 29 H 0.08 1.08 8.06 -51.93 -0.42 0.66 16 30 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 31 H 0.07 1.25 6.58 -51.93 -0.34 0.91 16 32 H 0.07 1.17 5.28 -51.93 -0.27 0.89 16 33 H 0.06 1.22 8.14 -51.92 -0.42 0.79 16 34 H 0.06 1.23 8.14 -51.91 -0.42 0.80 16 35 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 36 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16 37 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 38 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 39 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 LS Contribution 325.93 15.07 4.91 4.91 Total: -1.00 -31.54 325.93 -10.60 -42.14 By element: Atomic # 1 Polarization: 7.09 SS G_CDS: -5.88 Total: 1.21 kcal Atomic # 6 Polarization: -24.01 SS G_CDS: -2.13 Total: -26.14 kcal Atomic # 7 Polarization: -32.73 SS G_CDS: -0.17 Total: -32.90 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Atomic # 16 Polarization: -3.55 SS G_CDS: -2.30 Total: -5.85 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -31.54 -10.60 -42.14 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074981705.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.522 kcal (2) G-P(sol) polarization free energy of solvation -31.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.141 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds