Wall clock time and date at job start Mon Mar 30 2020 01:45:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 110.66177 * 2 1 4 4 C 1.54602 * 110.89343 * 123.30085 * 2 1 3 5 5 N 1.47907 * 102.62598 * 143.94286 * 4 2 1 6 6 C 1.46901 * 111.00270 * 94.52016 * 5 4 2 7 7 C 1.53000 * 109.46769 * 309.90382 * 6 5 4 8 8 C 1.53001 * 109.46886 * 180.02562 * 7 6 5 9 9 S 1.81002 * 109.47152 * 179.97438 * 8 7 6 10 10 C 1.76198 * 100.00092 * 179.97438 * 9 8 7 11 11 H 1.07999 * 119.99945 * 359.97438 * 10 9 8 12 12 C 1.38802 * 120.00251 * 180.02562 * 10 9 8 13 13 N 1.31634 * 119.99707 * 359.97438 * 12 10 9 14 14 Si 1.86796 * 120.00286 * 180.02562 * 12 10 9 15 15 H 1.48502 * 109.47120 * 359.97438 * 14 12 10 16 16 H 1.48497 * 109.47665 * 119.99602 * 14 12 10 17 17 H 1.48503 * 109.46798 * 239.99988 * 14 12 10 18 18 C 1.40038 * 107.88146 * 332.70566 * 5 4 2 19 19 C 1.39401 * 129.96074 * 198.38192 * 18 5 4 20 20 C 1.37905 * 120.19964 * 180.33255 * 19 18 5 21 21 C 1.38308 * 120.26711 * 359.97438 * 20 19 18 22 22 C 1.38303 * 119.88178 * 359.86571 * 21 20 19 23 23 C 1.37923 * 120.07688 * 0.02562 * 22 21 20 24 24 H 1.08997 * 109.47373 * 181.74203 * 1 2 3 25 25 H 1.09000 * 109.46956 * 301.74303 * 1 2 3 26 26 H 1.08998 * 109.46695 * 61.74466 * 1 2 3 27 27 H 1.08998 * 110.77976 * 25.65768 * 4 2 1 28 28 H 1.09000 * 110.77848 * 262.22675 * 4 2 1 29 29 H 1.09002 * 109.47401 * 189.90089 * 6 5 4 30 30 H 1.09001 * 109.46874 * 69.90102 * 6 5 4 31 31 H 1.09001 * 109.47194 * 299.99524 * 7 6 5 32 32 H 1.08992 * 109.47399 * 59.99697 * 7 6 5 33 33 H 1.09001 * 109.47109 * 299.99380 * 8 7 6 34 34 H 1.09002 * 109.47508 * 59.99571 * 8 7 6 35 35 H 0.96996 * 119.99880 * 180.02562 * 13 12 10 36 36 H 1.07999 * 119.90087 * 0.29588 * 19 18 5 37 37 H 1.08001 * 119.87120 * 179.97438 * 20 19 18 38 38 H 1.07994 * 120.06279 * 179.83994 * 21 20 19 39 39 H 1.07997 * 119.96229 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9146 1.0198 0.0000 4 6 2.0814 -0.7930 1.2072 5 7 3.2868 -1.4404 0.6454 6 6 4.4874 -0.6357 0.9081 7 6 4.2329 0.8127 0.4861 8 6 5.4836 1.6507 0.7591 9 16 5.1828 3.3641 0.2592 10 6 6.7381 4.0811 0.6732 11 1 7.5180 3.4691 1.1015 12 6 6.9607 5.4329 0.4498 13 7 6.0099 6.1790 -0.0718 14 14 8.6098 6.1929 0.8881 15 1 9.5011 5.1489 1.4546 16 1 9.2312 6.7655 -0.3330 17 1 8.4079 7.2687 1.8917 18 6 3.0845 -1.6056 -0.7304 19 6 3.7343 -2.4418 -1.6368 20 6 3.3722 -2.4372 -2.9675 21 6 2.3619 -1.6039 -3.4121 22 6 1.7101 -0.7737 -2.5184 23 6 2.0670 -0.7761 -1.1862 24 1 -0.3634 -1.0271 0.0312 25 1 -0.3633 0.5407 0.8739 26 1 -0.3633 0.4865 -0.9052 27 1 1.3611 -1.5400 1.5407 28 1 2.3481 -0.1204 2.0224 29 1 5.3259 -1.0379 0.3395 30 1 4.7210 -0.6685 1.9723 31 1 3.9993 0.8454 -0.5781 32 1 3.3944 1.2148 1.0546 33 1 5.7176 1.6181 1.8232 34 1 6.3218 1.2484 0.1902 35 1 6.1655 7.1235 -0.2282 36 1 4.5242 -3.0948 -1.2961 37 1 3.8795 -3.0870 -3.6653 38 1 2.0827 -1.6011 -4.4553 39 1 0.9207 -0.1227 -2.8641 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000074981705.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:53 Heat of formation + Delta-G solvation = 8.059226 kcal Electronic energy + Delta-G solvation = -19022.713808 eV Core-core repulsion = 16248.197812 eV Total energy + Delta-G solvation = -2774.515996 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 277.120 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.12815 -38.10798 -35.23229 -34.62638 -33.61644 -30.80207 -30.29087 -28.03343 -27.59630 -25.87490 -23.93975 -22.90559 -21.48955 -21.24564 -19.60519 -18.04040 -16.92842 -16.91821 -16.42799 -16.27589 -16.13948 -15.85722 -15.07676 -14.87899 -14.61908 -14.15502 -14.01975 -13.60048 -13.51898 -13.39101 -13.15220 -12.97353 -12.88008 -12.83592 -12.57409 -12.38224 -12.06164 -11.91567 -11.68248 -11.61335 -11.49194 -11.17450 -10.43077 -10.27352 -9.69725 -8.83808 -8.69348 -8.39499 -6.16102 0.40516 0.49227 1.30196 1.36890 1.48029 1.72690 2.26091 2.66956 2.88519 2.94890 3.28807 3.56894 3.79983 3.87169 3.94487 4.09160 4.16666 4.21140 4.29233 4.35791 4.44675 4.52414 4.59838 4.64464 4.68406 4.78156 4.80064 4.89582 4.95864 5.03009 5.05386 5.18681 5.22370 5.33741 5.37911 5.49238 5.57448 5.63071 5.82802 5.95226 6.16254 6.34056 7.02859 8.70147 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.023605 B = 0.004022 C = 0.003954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.896247 B = 6959.477487 C = 7080.266920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.090 4.090 3 H 0.077 0.923 4 C 0.051 3.949 5 N -0.491 5.491 6 C 0.068 3.932 7 C -0.115 4.115 8 C -0.086 4.086 9 S -0.198 6.198 10 C -0.538 4.538 11 H 0.072 0.928 12 C 0.016 3.984 13 N -0.908 5.908 14 Si 0.994 3.006 15 H -0.263 1.263 16 H -0.272 1.272 17 H -0.270 1.270 18 C 0.069 3.931 19 C -0.125 4.125 20 C -0.110 4.110 21 C -0.136 4.136 22 C -0.103 4.103 23 C -0.142 4.142 24 H 0.062 0.938 25 H 0.070 0.930 26 H 0.058 0.942 27 H 0.100 0.900 28 H 0.092 0.908 29 H 0.076 0.924 30 H 0.096 0.904 31 H 0.051 0.949 32 H 0.073 0.927 33 H 0.067 0.933 34 H 0.057 0.943 35 H 0.271 0.729 36 H 0.130 0.870 37 H 0.150 0.850 38 H 0.147 0.853 39 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.656 -17.221 -1.794 19.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.109 4.109 3 H 0.095 0.905 4 C -0.075 4.075 5 N -0.207 5.207 6 C -0.059 4.059 7 C -0.155 4.155 8 C -0.235 4.235 9 S 0.031 5.969 10 C -0.686 4.686 11 H 0.090 0.910 12 C -0.189 4.189 13 N -0.544 5.544 14 Si 0.816 3.184 15 H -0.187 1.187 16 H -0.197 1.197 17 H -0.195 1.195 18 C -0.027 4.027 19 C -0.145 4.145 20 C -0.128 4.128 21 C -0.155 4.155 22 C -0.122 4.122 23 C -0.144 4.144 24 H 0.081 0.919 25 H 0.089 0.911 26 H 0.077 0.923 27 H 0.119 0.881 28 H 0.110 0.890 29 H 0.095 0.905 30 H 0.114 0.886 31 H 0.070 0.930 32 H 0.092 0.908 33 H 0.086 0.914 34 H 0.076 0.924 35 H 0.081 0.919 36 H 0.148 0.852 37 H 0.168 0.832 38 H 0.164 0.836 39 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -9.526 -17.065 -1.987 19.644 hybrid contribution 1.856 1.027 0.272 2.139 sum -7.669 -16.038 -1.715 17.860 Atomic orbital electron populations 1.21641 0.92043 1.02410 1.02656 1.21540 0.98178 0.98842 0.92341 0.90528 1.23332 0.90694 0.97067 0.96426 1.60528 1.04664 1.46117 1.09418 1.22344 0.91820 0.89010 1.02759 1.22028 0.96458 0.95695 1.01338 1.23133 1.00863 0.96835 1.02714 1.84629 1.24050 1.04056 1.84165 1.23073 0.99511 0.97477 1.48542 0.90971 1.26065 1.02075 0.96510 0.94219 1.70162 1.34767 1.07250 1.42268 0.84965 0.76944 0.78149 0.78316 1.18650 1.19679 1.19541 1.19800 0.97079 0.96383 0.89389 1.20747 1.01380 0.99464 0.92911 1.21243 0.97344 0.99339 0.94921 1.21384 0.96837 0.96830 1.00407 1.20679 1.00437 0.99431 0.91649 1.21210 1.00051 0.97871 0.95289 0.91920 0.91109 0.92300 0.88144 0.89009 0.90536 0.88614 0.92995 0.90804 0.91400 0.92387 0.91948 0.85168 0.83221 0.83556 0.85361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.51 9.12 71.98 0.66 -1.85 16 2 C -0.09 -2.19 2.74 -10.71 -0.03 -2.22 16 3 H 0.08 2.22 5.96 -2.39 -0.01 2.21 16 4 C 0.05 1.17 6.05 86.65 0.52 1.69 16 5 N -0.49 -12.64 5.33 -688.64 -3.67 -16.31 16 6 C 0.07 1.83 5.30 86.30 0.46 2.29 16 7 C -0.12 -3.82 3.48 30.59 0.11 -3.71 16 8 C -0.09 -3.51 5.67 71.98 0.41 -3.10 16 9 S -0.20 -10.66 21.44 -56.49 -1.21 -11.87 16 10 C -0.54 -31.45 9.50 67.95 0.65 -30.81 16 11 H 0.07 4.07 7.80 -2.91 -0.02 4.05 16 12 C 0.02 0.93 5.49 84.86 0.47 1.39 16 13 N -0.91 -55.21 13.22 21.65 0.29 -54.92 16 14 Si 0.99 44.20 29.55 68.60 2.03 46.23 16 15 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16 16 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 17 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 18 C 0.07 1.86 5.02 38.28 0.19 2.05 16 19 C -0.13 -3.02 10.07 22.47 0.23 -2.79 16 20 C -0.11 -2.29 10.02 22.21 0.22 -2.06 16 21 C -0.14 -2.86 10.06 22.30 0.22 -2.64 16 22 C -0.10 -2.49 9.88 22.21 0.22 -2.27 16 23 C -0.14 -3.75 4.83 -19.48 -0.09 -3.84 16 24 H 0.06 1.12 8.11 -2.39 -0.02 1.10 16 25 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 26 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 27 H 0.10 1.99 7.90 -2.39 -0.02 1.97 16 28 H 0.09 2.00 6.88 -2.39 -0.02 1.98 16 29 H 0.08 2.07 8.06 -2.39 -0.02 2.05 16 30 H 0.10 2.32 8.14 -2.39 -0.02 2.30 16 31 H 0.05 1.91 6.58 -2.39 -0.02 1.89 16 32 H 0.07 2.42 5.28 -2.39 -0.01 2.40 16 33 H 0.07 2.67 8.14 -2.39 -0.02 2.65 16 34 H 0.06 2.37 8.14 -2.39 -0.02 2.36 16 35 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 36 H 0.13 2.76 8.06 -2.91 -0.02 2.74 16 37 H 0.15 2.21 8.06 -2.91 -0.02 2.19 16 38 H 0.15 2.26 8.06 -2.91 -0.02 2.24 16 39 H 0.13 2.69 8.06 -2.91 -0.02 2.67 16 Total: -1.00 -68.07 325.93 2.68 -65.39 By element: Atomic # 1 Polarization: 18.34 SS G_CDS: 1.02 Total: 19.36 kcal Atomic # 6 Polarization: -52.10 SS G_CDS: 4.23 Total: -47.87 kcal Atomic # 7 Polarization: -67.85 SS G_CDS: -3.38 Total: -71.24 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.23 kcal Atomic # 16 Polarization: -10.66 SS G_CDS: -1.21 Total: -11.87 kcal Total: -68.07 2.68 -65.39 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074981705.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.454 kcal (2) G-P(sol) polarization free energy of solvation -68.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.395 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds