Wall clock time and date at job start Mon Mar 30 2020 01:45:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09009 * 109.44191 * 2 1 4 4 C 1.51730 * 109.45189 * 240.05918 * 2 1 3 5 5 C 1.51286 * 115.86676 * 171.45897 * 4 2 1 6 6 N 1.46995 * 111.62069 * 70.60803 * 5 4 2 7 7 C 1.46896 * 111.00183 * 29.97882 * 6 5 4 8 8 C 1.53010 * 109.46714 * 77.41168 * 7 6 5 9 9 C 1.50700 * 109.46752 * 179.97438 * 8 7 6 10 10 H 1.08000 * 119.99953 * 0.02562 * 9 8 7 11 11 C 1.37878 * 119.99562 * 179.97438 * 9 8 7 12 12 N 1.31505 * 120.00515 * 0.02562 * 11 9 8 13 13 Si 1.86799 * 119.99652 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.47219 * 90.00355 * 13 11 9 15 15 H 1.48496 * 109.47176 * 210.00041 * 13 11 9 16 16 H 1.48498 * 109.47428 * 330.00142 * 13 11 9 17 17 C 1.40583 * 110.37891 * 266.46783 * 6 5 4 18 18 C 1.39186 * 118.83788 * 257.83008 * 17 6 5 19 19 C 1.38264 * 119.68799 * 179.46758 * 18 17 6 20 20 C 1.38272 * 120.70667 * 359.97438 * 19 18 17 21 21 C 1.38572 * 119.93330 * 0.24115 * 20 19 18 22 22 C 1.38219 * 122.05690 * 77.68259 * 17 6 5 23 23 S 1.77622 * 118.21700 * 0.78608 * 22 17 6 24 24 H 1.09008 * 109.46472 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47067 * 299.93975 * 1 2 3 26 26 H 1.08991 * 109.47841 * 59.95187 * 1 2 3 27 27 H 1.09001 * 108.20066 * 49.79675 * 4 2 1 28 28 H 1.09000 * 108.03881 * 292.99840 * 4 2 1 29 29 H 1.08998 * 109.04961 * 310.05219 * 5 4 2 30 30 H 1.08995 * 108.98869 * 191.11697 * 5 4 2 31 31 H 1.08998 * 109.47096 * 197.40544 * 7 6 5 32 32 H 1.08995 * 109.47334 * 317.41568 * 7 6 5 33 33 H 1.08998 * 109.46830 * 299.99539 * 8 7 6 34 34 H 1.08995 * 109.46894 * 60.00130 * 8 7 6 35 35 H 0.96995 * 120.00535 * 179.97438 * 12 11 9 36 36 H 1.07992 * 120.15994 * 359.49361 * 18 17 6 37 37 H 1.08003 * 119.64901 * 180.02562 * 19 18 17 38 38 H 1.08002 * 120.03085 * 180.26323 * 20 19 18 39 39 H 1.07997 * 120.42862 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8928 1.0279 0.0000 4 6 2.0353 -0.7141 -1.2398 5 6 3.5244 -0.6257 -1.4915 6 7 4.2867 -1.4167 -0.5148 7 6 3.5087 -2.5737 -0.0522 8 6 3.5338 -3.6662 -1.1232 9 6 2.7361 -4.8534 -0.6484 10 1 2.2587 -4.8308 0.3201 11 6 2.6150 -5.9680 -1.4510 12 7 3.1959 -5.9953 -2.6305 13 14 1.6257 -7.4393 -0.8628 14 1 0.2109 -7.2861 -1.2873 15 1 2.1876 -8.6811 -1.4521 16 1 1.6921 -7.5203 0.6185 17 6 4.6816 -0.6103 0.5669 18 6 5.9967 -0.1575 0.6217 19 6 6.4011 0.6458 1.6719 20 6 5.5128 1.0051 2.6687 21 6 4.2032 0.5546 2.6233 22 6 3.8047 -0.2519 1.5734 23 16 2.1369 -0.8569 1.4889 24 1 -0.3632 -1.0278 -0.0005 25 1 -0.3633 0.5129 0.8905 26 1 -0.3634 0.5145 -0.8894 27 1 1.5184 -0.3001 -2.1055 28 1 1.7659 -1.7669 -1.1562 29 1 3.8352 0.4169 -1.4252 30 1 3.7373 -0.9972 -2.4938 31 1 3.9438 -2.9589 0.8699 32 1 2.4785 -2.2688 0.1316 33 1 3.0987 -3.2810 -2.0454 34 1 4.5639 -3.9711 -1.3071 35 1 3.1110 -6.7795 -3.1949 36 1 6.6977 -0.4320 -0.1525 37 1 7.4216 0.9971 1.7135 38 1 5.8394 1.6366 3.4818 39 1 3.5028 0.8300 3.3978 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078525388.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:09 Heat of formation + Delta-G solvation = 44.715359 kcal Electronic energy + Delta-G solvation = -19853.687572 eV Core-core repulsion = 17080.761105 eV Total energy + Delta-G solvation = -2772.926467 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 277.120 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.93744 -37.46421 -34.19397 -33.00930 -30.91701 -30.46095 -29.59591 -27.45680 -24.98196 -23.53471 -22.58203 -21.66581 -21.22953 -19.14793 -17.46034 -16.87646 -16.37713 -15.42976 -15.21018 -14.78869 -14.48185 -14.33325 -14.08289 -13.63920 -13.36738 -12.97481 -12.42442 -12.23427 -12.10393 -11.85012 -11.74518 -11.47978 -11.36962 -11.06937 -10.91851 -10.83110 -10.63242 -10.41779 -9.99391 -9.76385 -9.38626 -9.08560 -8.84542 -8.68953 -8.27610 -7.98133 -6.75044 -5.92926 -3.94173 1.09992 1.42694 1.89859 2.65563 3.35927 3.42250 3.46573 3.78215 4.29139 4.55960 4.66837 4.92715 4.98119 5.05491 5.22334 5.32664 5.43084 5.45230 5.53045 5.59325 5.66374 5.70506 5.81124 5.88275 6.03917 6.11547 6.22542 6.30519 6.38765 6.42473 6.50811 6.54688 6.86595 6.90955 7.18186 7.40423 7.69381 7.89859 7.99622 8.16930 8.53353 9.13874 9.69114 11.18573 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.019297 B = 0.005901 C = 0.005329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.621860 B = 4743.707981 C = 5252.851459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.059 4.059 3 H 0.082 0.918 4 C -0.168 4.168 5 C 0.066 3.934 6 N -0.495 5.495 7 C 0.030 3.970 8 C 0.033 3.967 9 C -0.515 4.515 10 H 0.055 0.945 11 C 0.058 3.942 12 N -0.895 5.895 13 Si 0.888 3.112 14 H -0.281 1.281 15 H -0.287 1.287 16 H -0.274 1.274 17 C 0.135 3.865 18 C -0.108 4.108 19 C -0.100 4.100 20 C -0.139 4.139 21 C -0.071 4.071 22 C -0.136 4.136 23 S -0.152 6.152 24 H 0.068 0.932 25 H 0.063 0.937 26 H 0.070 0.930 27 H 0.072 0.928 28 H 0.106 0.894 29 H 0.055 0.945 30 H 0.089 0.911 31 H 0.055 0.945 32 H 0.086 0.914 33 H 0.014 0.986 34 H 0.018 0.982 35 H 0.259 0.741 36 H 0.133 0.867 37 H 0.123 0.877 38 H 0.123 0.877 39 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.330 16.786 6.505 18.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.187 4.187 3 H 0.101 0.899 4 C -0.208 4.208 5 C -0.061 4.061 6 N -0.215 5.215 7 C -0.096 4.096 8 C -0.004 4.004 9 C -0.554 4.554 10 H 0.073 0.927 11 C -0.143 4.143 12 N -0.534 5.534 13 Si 0.717 3.283 14 H -0.208 1.208 15 H -0.213 1.213 16 H -0.199 1.199 17 C 0.037 3.963 18 C -0.129 4.129 19 C -0.119 4.119 20 C -0.159 4.159 21 C -0.093 4.093 22 C -0.249 4.249 23 S 0.085 5.915 24 H 0.087 0.913 25 H 0.083 0.917 26 H 0.089 0.911 27 H 0.091 0.909 28 H 0.124 0.876 29 H 0.074 0.926 30 H 0.107 0.893 31 H 0.073 0.927 32 H 0.104 0.896 33 H 0.033 0.967 34 H 0.036 0.964 35 H 0.069 0.931 36 H 0.151 0.849 37 H 0.141 0.859 38 H 0.141 0.859 39 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 0.111 15.719 6.779 17.119 hybrid contribution -0.362 0.140 -0.082 0.397 sum -0.251 15.858 6.697 17.216 Atomic orbital electron populations 1.21637 0.91588 1.03441 1.02406 1.23136 0.99517 1.00788 0.95244 0.89917 1.21947 0.97884 1.04625 0.96323 1.21781 0.90369 0.96521 0.97391 1.60892 1.42855 1.06964 1.10764 1.23420 0.98067 0.88712 0.99407 1.19050 0.97301 0.91172 0.92918 1.21197 1.31529 0.99889 1.02749 0.92693 1.24969 0.95881 0.98442 0.94974 1.69971 1.44140 1.29523 1.09815 0.86650 0.80241 0.82448 0.79008 1.20757 1.21308 1.19880 1.19425 0.93067 0.91855 0.91952 1.21291 0.94781 0.97902 0.98883 1.21188 0.99491 0.97275 0.93988 1.21173 0.93457 1.01818 0.99498 1.21202 0.96300 0.94858 0.96893 1.22238 0.97175 1.04376 1.01157 1.86066 1.07416 1.61303 1.36697 0.91260 0.91749 0.91110 0.90922 0.87592 0.92615 0.89300 0.92679 0.89635 0.96737 0.96398 0.93147 0.84914 0.85871 0.85868 0.85382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.56 9.15 37.16 0.34 -1.22 16 2 C -0.06 -0.82 2.90 -27.38 -0.08 -0.90 16 3 H 0.08 1.09 8.14 -51.92 -0.42 0.67 16 4 C -0.17 -2.61 4.34 -28.24 -0.12 -2.73 16 5 C 0.07 1.08 5.40 -4.64 -0.03 1.05 16 6 N -0.49 -9.37 4.67 -171.89 -0.80 -10.18 16 7 C 0.03 0.66 2.95 -3.82 -0.01 0.65 16 8 C 0.03 0.88 4.80 -27.88 -0.13 0.75 16 9 C -0.51 -14.76 9.11 -34.44 -0.31 -15.08 16 10 H 0.05 1.55 7.74 -52.49 -0.41 1.15 16 11 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 12 N -0.89 -27.14 13.29 55.43 0.74 -26.41 16 13 Si 0.89 21.99 29.54 -169.99 -5.02 16.96 16 14 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 15 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 16 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 17 C 0.14 2.29 4.29 -83.50 -0.36 1.94 16 18 C -0.11 -1.58 9.97 -39.22 -0.39 -1.97 16 19 C -0.10 -1.20 10.01 -39.56 -0.40 -1.60 16 20 C -0.14 -1.62 10.07 -39.45 -0.40 -2.02 16 21 C -0.07 -0.95 9.85 -39.45 -0.39 -1.34 16 22 C -0.14 -2.18 5.49 -39.58 -0.22 -2.40 16 23 S -0.15 -2.49 17.59 -107.50 -1.89 -4.38 16 24 H 0.07 0.90 8.14 -51.92 -0.42 0.48 16 25 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 26 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 27 H 0.07 0.97 8.07 -51.93 -0.42 0.55 16 28 H 0.11 2.01 5.07 -51.93 -0.26 1.75 16 29 H 0.06 0.82 7.68 -51.93 -0.40 0.42 16 30 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 31 H 0.05 1.30 7.89 -51.93 -0.41 0.89 16 32 H 0.09 1.81 2.58 -24.11 -0.06 1.75 16 33 H 0.01 0.39 7.37 -51.93 -0.38 0.01 16 34 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 36 H 0.13 1.84 8.06 -52.49 -0.42 1.42 16 37 H 0.12 1.12 8.06 -52.48 -0.42 0.70 16 38 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 39 H 0.13 1.50 8.06 -52.49 -0.42 1.07 16 LS Contribution 315.96 15.07 4.76 4.76 Total: -1.00 -31.06 315.96 -10.51 -41.57 By element: Atomic # 1 Polarization: 6.66 SS G_CDS: -5.70 Total: 0.95 kcal Atomic # 6 Polarization: -20.69 SS G_CDS: -2.59 Total: -23.28 kcal Atomic # 7 Polarization: -36.52 SS G_CDS: -0.07 Total: -36.58 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.96 kcal Atomic # 16 Polarization: -2.49 SS G_CDS: -1.89 Total: -4.38 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -31.06 -10.51 -41.57 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078525388.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.283 kcal (2) G-P(sol) polarization free energy of solvation -31.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.567 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds