Wall clock time and date at job start Mon Mar 30 2020 01:45:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09009 * 109.44191 * 2 1 4 4 C 1.51730 * 109.45189 * 240.05918 * 2 1 3 5 5 C 1.51286 * 115.86676 * 171.45897 * 4 2 1 6 6 N 1.46995 * 111.62069 * 70.60803 * 5 4 2 7 7 C 1.46896 * 111.00183 * 29.97882 * 6 5 4 8 8 C 1.53010 * 109.46714 * 77.41168 * 7 6 5 9 9 C 1.50700 * 109.46752 * 179.97438 * 8 7 6 10 10 H 1.08000 * 119.99953 * 0.02562 * 9 8 7 11 11 C 1.37878 * 119.99562 * 179.97438 * 9 8 7 12 12 N 1.31505 * 120.00515 * 0.02562 * 11 9 8 13 13 Si 1.86799 * 119.99652 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.47219 * 90.00355 * 13 11 9 15 15 H 1.48496 * 109.47176 * 210.00041 * 13 11 9 16 16 H 1.48498 * 109.47428 * 330.00142 * 13 11 9 17 17 C 1.40583 * 110.37891 * 266.46783 * 6 5 4 18 18 C 1.39186 * 118.83788 * 257.83008 * 17 6 5 19 19 C 1.38264 * 119.68799 * 179.46758 * 18 17 6 20 20 C 1.38272 * 120.70667 * 359.97438 * 19 18 17 21 21 C 1.38572 * 119.93330 * 0.24115 * 20 19 18 22 22 C 1.38219 * 122.05690 * 77.68259 * 17 6 5 23 23 S 1.77622 * 118.21700 * 0.78608 * 22 17 6 24 24 H 1.09008 * 109.46472 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47067 * 299.93975 * 1 2 3 26 26 H 1.08991 * 109.47841 * 59.95187 * 1 2 3 27 27 H 1.09001 * 108.20066 * 49.79675 * 4 2 1 28 28 H 1.09000 * 108.03881 * 292.99840 * 4 2 1 29 29 H 1.08998 * 109.04961 * 310.05219 * 5 4 2 30 30 H 1.08995 * 108.98869 * 191.11697 * 5 4 2 31 31 H 1.08998 * 109.47096 * 197.40544 * 7 6 5 32 32 H 1.08995 * 109.47334 * 317.41568 * 7 6 5 33 33 H 1.08998 * 109.46830 * 299.99539 * 8 7 6 34 34 H 1.08995 * 109.46894 * 60.00130 * 8 7 6 35 35 H 0.96995 * 120.00535 * 179.97438 * 12 11 9 36 36 H 1.07992 * 120.15994 * 359.49361 * 18 17 6 37 37 H 1.08003 * 119.64901 * 180.02562 * 19 18 17 38 38 H 1.08002 * 120.03085 * 180.26323 * 20 19 18 39 39 H 1.07997 * 120.42862 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8928 1.0279 0.0000 4 6 2.0353 -0.7141 -1.2398 5 6 3.5244 -0.6257 -1.4915 6 7 4.2867 -1.4167 -0.5148 7 6 3.5087 -2.5737 -0.0522 8 6 3.5338 -3.6662 -1.1232 9 6 2.7361 -4.8534 -0.6484 10 1 2.2587 -4.8308 0.3201 11 6 2.6150 -5.9680 -1.4510 12 7 3.1959 -5.9953 -2.6305 13 14 1.6257 -7.4393 -0.8628 14 1 0.2109 -7.2861 -1.2873 15 1 2.1876 -8.6811 -1.4521 16 1 1.6921 -7.5203 0.6185 17 6 4.6816 -0.6103 0.5669 18 6 5.9967 -0.1575 0.6217 19 6 6.4011 0.6458 1.6719 20 6 5.5128 1.0051 2.6687 21 6 4.2032 0.5546 2.6233 22 6 3.8047 -0.2519 1.5734 23 16 2.1369 -0.8569 1.4889 24 1 -0.3632 -1.0278 -0.0005 25 1 -0.3633 0.5129 0.8905 26 1 -0.3634 0.5145 -0.8894 27 1 1.5184 -0.3001 -2.1055 28 1 1.7659 -1.7669 -1.1562 29 1 3.8352 0.4169 -1.4252 30 1 3.7373 -0.9972 -2.4938 31 1 3.9438 -2.9589 0.8699 32 1 2.4785 -2.2688 0.1316 33 1 3.0987 -3.2810 -2.0454 34 1 4.5639 -3.9711 -1.3071 35 1 3.1110 -6.7795 -3.1949 36 1 6.6977 -0.4320 -0.1525 37 1 7.4216 0.9971 1.7135 38 1 5.8394 1.6366 3.4818 39 1 3.5028 0.8300 3.3978 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078525388.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:09 Heat of formation + Delta-G solvation = 27.096141 kcal Electronic energy + Delta-G solvation = -19854.451599 eV Core-core repulsion = 17080.761105 eV Total energy + Delta-G solvation = -2773.690494 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 277.120 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.20184 -38.68068 -35.56864 -34.99040 -32.19003 -31.91576 -31.00230 -28.83194 -26.77709 -24.96099 -23.67986 -22.92233 -22.77704 -20.63251 -18.82433 -18.27948 -18.20583 -16.83078 -16.54267 -16.34344 -15.96763 -15.59030 -15.24502 -14.79679 -14.64259 -14.35436 -14.22100 -13.64381 -13.44338 -13.33327 -13.10891 -12.86381 -12.73551 -12.53064 -12.49507 -12.36881 -12.01513 -11.85418 -11.77231 -11.40915 -11.21573 -11.08390 -10.53544 -10.00607 -9.87652 -9.28853 -8.17984 -8.12680 -6.28328 0.02189 0.35275 0.73602 1.38776 1.40494 1.50675 1.51887 2.40663 2.72278 2.97273 3.15007 3.49209 3.82000 3.95389 4.08671 4.16075 4.21734 4.32180 4.41350 4.48186 4.52185 4.64111 4.68396 4.76976 4.80201 4.86863 4.96433 5.00063 5.15664 5.22478 5.23601 5.32792 5.39321 5.49065 5.54373 5.66630 5.80189 5.89117 6.07137 6.34639 6.47356 6.87991 7.40157 8.94207 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.019297 B = 0.005901 C = 0.005329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.621860 B = 4743.707981 C = 5252.851459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.044 4.044 3 H 0.098 0.902 4 C -0.162 4.162 5 C 0.064 3.936 6 N -0.509 5.509 7 C 0.054 3.946 8 C 0.046 3.954 9 C -0.537 4.537 10 H 0.054 0.946 11 C 0.005 3.995 12 N -0.931 5.931 13 Si 0.961 3.039 14 H -0.269 1.269 15 H -0.281 1.281 16 H -0.267 1.267 17 C 0.101 3.899 18 C -0.120 4.120 19 C -0.091 4.091 20 C -0.124 4.124 21 C -0.075 4.075 22 C -0.146 4.146 23 S -0.203 6.203 24 H 0.051 0.949 25 H 0.078 0.922 26 H 0.095 0.905 27 H 0.097 0.903 28 H 0.066 0.934 29 H 0.077 0.923 30 H 0.074 0.926 31 H 0.029 0.971 32 H 0.099 0.901 33 H -0.004 1.004 34 H -0.022 1.022 35 H 0.263 0.737 36 H 0.132 0.868 37 H 0.159 0.841 38 H 0.163 0.837 39 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.092 18.662 8.023 20.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.172 4.172 3 H 0.117 0.883 4 C -0.202 4.202 5 C -0.061 4.061 6 N -0.229 5.229 7 C -0.073 4.073 8 C 0.008 3.992 9 C -0.575 4.575 10 H 0.072 0.928 11 C -0.193 4.193 12 N -0.571 5.571 13 Si 0.785 3.215 14 H -0.194 1.194 15 H -0.206 1.206 16 H -0.192 1.192 17 C 0.003 3.997 18 C -0.141 4.141 19 C -0.109 4.109 20 C -0.144 4.144 21 C -0.097 4.097 22 C -0.260 4.260 23 S 0.034 5.966 24 H 0.070 0.930 25 H 0.097 0.903 26 H 0.113 0.887 27 H 0.115 0.885 28 H 0.085 0.915 29 H 0.095 0.905 30 H 0.093 0.907 31 H 0.048 0.952 32 H 0.116 0.884 33 H 0.015 0.985 34 H -0.003 1.003 35 H 0.072 0.928 36 H 0.150 0.850 37 H 0.177 0.823 38 H 0.181 0.819 39 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -0.124 17.616 8.306 19.477 hybrid contribution -0.191 -0.352 -0.549 0.680 sum -0.315 17.264 7.757 18.930 Atomic orbital electron populations 1.21658 0.89819 1.02912 1.04288 1.23166 1.00745 1.00620 0.92660 0.88337 1.21862 0.97408 1.02531 0.98398 1.21814 0.91023 0.97154 0.96150 1.60659 1.42689 1.07290 1.12276 1.22999 0.99206 0.88885 0.96200 1.18850 0.94255 0.92402 0.93667 1.21538 1.32009 1.01084 1.02885 0.92790 1.25888 0.96858 1.01601 0.94952 1.70102 1.45334 1.30623 1.11035 0.85512 0.78916 0.78319 0.78713 1.19417 1.20593 1.19164 1.19505 0.94425 0.93589 0.92165 1.21445 0.93761 0.98756 1.00139 1.21578 1.01243 0.95547 0.92569 1.21638 0.92238 1.00681 0.99854 1.21497 0.97667 0.94199 0.96304 1.22255 0.96222 1.05485 1.01992 1.86154 1.08862 1.63044 1.38491 0.92969 0.90341 0.88668 0.88483 0.91523 0.90465 0.90722 0.95230 0.88402 0.98537 1.00333 0.92811 0.85048 0.82311 0.81912 0.83682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.84 9.15 71.98 0.66 -2.19 16 2 C -0.04 -1.19 2.90 30.18 0.09 -1.11 16 3 H 0.10 2.39 8.14 -2.38 -0.02 2.37 16 4 C -0.16 -5.07 4.34 29.62 0.13 -4.94 16 5 C 0.06 2.17 5.40 85.73 0.46 2.64 16 6 N -0.51 -20.13 4.67 -697.75 -3.26 -23.38 16 7 C 0.05 2.53 2.95 86.31 0.25 2.79 16 8 C 0.05 2.60 4.80 29.85 0.14 2.74 16 9 C -0.54 -32.07 9.11 25.60 0.23 -31.84 16 10 H 0.05 3.16 7.74 -2.91 -0.02 3.14 16 11 C 0.00 0.29 5.46 84.66 0.46 0.75 16 12 N -0.93 -58.16 13.29 21.45 0.28 -57.87 16 13 Si 0.96 45.74 29.54 68.60 2.03 47.77 16 14 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 15 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 16 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 17 C 0.10 3.43 4.29 37.96 0.16 3.59 16 18 C -0.12 -3.40 9.97 22.50 0.22 -3.18 16 19 C -0.09 -1.87 10.01 22.28 0.22 -1.65 16 20 C -0.12 -2.40 10.07 22.36 0.23 -2.17 16 21 C -0.08 -1.84 9.85 22.35 0.22 -1.62 16 22 C -0.15 -4.59 5.49 22.27 0.12 -4.47 16 23 S -0.20 -6.68 17.59 -56.49 -0.99 -7.68 16 24 H 0.05 1.34 8.14 -2.38 -0.02 1.32 16 25 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 26 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 27 H 0.10 2.52 8.07 -2.39 -0.02 2.50 16 28 H 0.07 2.64 5.07 -2.39 -0.01 2.63 16 29 H 0.08 2.24 7.68 -2.39 -0.02 2.22 16 30 H 0.07 2.66 8.14 -2.39 -0.02 2.64 16 31 H 0.03 1.48 7.89 -2.39 -0.02 1.46 16 32 H 0.10 4.36 2.58 -20.08 -0.05 4.31 16 33 H 0.00 -0.22 7.37 -2.39 -0.02 -0.24 16 34 H -0.02 -1.37 8.14 -2.39 -0.02 -1.39 16 35 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 36 H 0.13 3.63 8.06 -2.91 -0.02 3.61 16 37 H 0.16 2.15 8.06 -2.91 -0.02 2.12 16 38 H 0.16 1.89 8.06 -2.91 -0.02 1.87 16 39 H 0.15 2.98 8.06 -2.91 -0.02 2.96 16 Total: -1.00 -70.61 315.96 2.65 -67.96 By element: Atomic # 1 Polarization: 12.87 SS G_CDS: 0.98 Total: 13.85 kcal Atomic # 6 Polarization: -44.25 SS G_CDS: 3.61 Total: -40.65 kcal Atomic # 7 Polarization: -78.28 SS G_CDS: -2.97 Total: -81.25 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 2.03 Total: 47.77 kcal Atomic # 16 Polarization: -6.68 SS G_CDS: -0.99 Total: -7.68 kcal Total: -70.61 2.65 -67.96 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078525388.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.056 kcal (2) G-P(sol) polarization free energy of solvation -70.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.960 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds