Wall clock time and date at job start Mon Mar 30 2020 01:45:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 109.43007 * 2 1 4 4 C 1.51722 * 109.44855 * 119.93799 * 2 1 3 5 5 C 1.51287 * 115.71879 * 188.42956 * 4 2 1 6 6 N 1.46985 * 111.61245 * 289.45967 * 5 4 2 7 7 C 1.46900 * 111.00001 * 217.06515 * 6 5 4 8 8 C 1.53011 * 109.46950 * 75.67987 * 7 6 5 9 9 C 1.50694 * 109.47081 * 180.02562 * 8 7 6 10 10 H 1.08000 * 120.00444 * 359.97438 * 9 8 7 11 11 C 1.37880 * 119.99632 * 180.02562 * 9 8 7 12 12 N 1.31513 * 119.99490 * 179.97438 * 11 9 8 13 13 Si 1.86795 * 120.00061 * 359.97438 * 11 9 8 14 14 H 1.48503 * 109.47336 * 90.00086 * 13 11 9 15 15 H 1.48508 * 109.47167 * 209.99778 * 13 11 9 16 16 H 1.48497 * 109.47356 * 329.99958 * 13 11 9 17 17 C 1.40597 * 110.39128 * 93.55229 * 6 5 4 18 18 C 1.39186 * 118.83332 * 102.30224 * 17 6 5 19 19 C 1.38267 * 119.68243 * 180.40068 * 18 17 6 20 20 C 1.38266 * 120.70256 * 0.05045 * 19 18 17 21 21 C 1.38579 * 119.94281 * 359.80294 * 20 19 18 22 22 C 1.38211 * 122.04454 * 282.38881 * 17 6 5 23 23 S 1.77625 * 118.23245 * 359.12168 * 22 17 6 24 24 H 1.09003 * 109.47281 * 300.06861 * 1 2 3 25 25 H 1.09005 * 109.47086 * 60.06367 * 1 2 3 26 26 H 1.08997 * 109.47669 * 180.02562 * 1 2 3 27 27 H 1.09003 * 108.20874 * 66.86432 * 4 2 1 28 28 H 1.09006 * 108.20206 * 309.98405 * 4 2 1 29 29 H 1.08995 * 109.05106 * 50.01133 * 5 4 2 30 30 H 1.09006 * 109.04753 * 168.98844 * 5 4 2 31 31 H 1.09000 * 109.47758 * 195.67650 * 7 6 5 32 32 H 1.08999 * 109.47452 * 315.68244 * 7 6 5 33 33 H 1.09000 * 109.46615 * 300.00363 * 8 7 6 34 34 H 1.08999 * 109.46833 * 59.99878 * 8 7 6 35 35 H 0.97010 * 119.99648 * 180.02562 * 12 11 9 36 36 H 1.07992 * 120.16113 * 0.37356 * 18 17 6 37 37 H 1.07999 * 119.64927 * 180.02562 * 19 18 17 38 38 H 1.07998 * 120.03252 * 179.78732 * 20 19 18 39 39 H 1.07999 * 120.43302 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8926 1.0279 0.0000 4 6 2.0352 -0.7140 1.2397 5 6 3.5251 -0.6257 1.4869 6 7 4.2841 -1.4167 0.5077 7 6 5.4477 -2.0563 1.1361 8 6 4.9839 -3.2532 1.9689 9 6 6.1774 -3.9090 2.6140 10 1 7.1678 -3.5123 2.4465 11 6 6.0051 -5.0163 3.4174 12 7 7.0468 -5.5889 3.9800 13 14 4.2922 -5.7029 3.7066 14 1 3.9835 -6.7174 2.6670 15 1 4.2327 -6.3357 5.0488 16 1 3.2987 -4.6017 3.6341 17 6 4.6763 -0.6102 -0.5751 18 6 5.9921 -0.1604 -0.6351 19 6 6.3945 0.6406 -1.6879 20 6 5.5033 1.0008 -2.6817 21 6 4.1924 0.5543 -2.6303 22 6 3.7960 -0.2503 -1.5780 23 16 2.1282 -0.8550 -1.4891 24 1 -0.3634 0.5149 0.8894 25 1 -0.3633 0.5129 -0.8906 26 1 -0.3634 -1.0276 0.0005 27 1 1.7650 -1.7670 1.1603 28 1 1.5211 -0.2972 2.1059 29 1 3.8358 0.4168 1.4197 30 1 3.7423 -0.9978 2.4882 31 1 6.1367 -2.3968 0.3632 32 1 5.9525 -1.3380 1.7820 33 1 4.2948 -2.9126 2.7418 34 1 4.4790 -3.9715 1.3230 35 1 6.9257 -6.3682 4.5449 36 1 6.6952 -0.4353 0.1370 37 1 7.4157 0.9890 -1.7341 38 1 5.8284 1.6297 -3.4973 39 1 3.4896 0.8311 -3.4022 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078525394.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:11 Heat of formation + Delta-G solvation = 28.918768 kcal Electronic energy + Delta-G solvation = -19499.520851 eV Core-core repulsion = 16725.909392 eV Total energy + Delta-G solvation = -2773.611459 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 277.120 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.93689 -37.13319 -34.91446 -33.03217 -31.15101 -30.63884 -30.00531 -27.87770 -24.67919 -23.72783 -22.80220 -21.73286 -20.70357 -19.78257 -17.63703 -16.87087 -16.59273 -15.47846 -15.20762 -14.99115 -14.61908 -14.12234 -14.08802 -13.85641 -13.57666 -13.03957 -12.86764 -12.60183 -12.42188 -12.18556 -11.85387 -11.59340 -11.36657 -11.32919 -10.96632 -10.94709 -10.69918 -10.24309 -10.07954 -9.90804 -9.80408 -9.29567 -9.05332 -8.87546 -8.55490 -7.78597 -7.39030 -6.07234 -4.06052 1.11918 1.38065 1.94882 2.68113 3.31968 3.38862 3.43308 3.72334 4.01223 4.44250 4.58330 4.82831 4.96421 5.02745 5.11088 5.22603 5.27562 5.36302 5.42701 5.47334 5.56988 5.60611 5.69069 5.79672 5.89835 5.91505 5.96360 6.00037 6.15272 6.29039 6.32244 6.39574 6.49329 6.65292 6.81191 7.06211 7.23598 7.47638 7.60014 7.77715 8.48317 8.95786 9.54998 11.05908 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.017970 B = 0.005912 C = 0.004754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1557.747539 B = 4734.711662 C = 5888.916865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.062 4.062 3 H 0.082 0.918 4 C -0.115 4.115 5 C 0.060 3.940 6 N -0.491 5.491 7 C 0.069 3.931 8 C -0.004 4.004 9 C -0.523 4.523 10 H 0.071 0.929 11 C 0.070 3.930 12 N -0.902 5.902 13 Si 0.880 3.120 14 H -0.276 1.276 15 H -0.289 1.289 16 H -0.265 1.265 17 C 0.144 3.856 18 C -0.167 4.167 19 C -0.087 4.087 20 C -0.148 4.148 21 C -0.064 4.064 22 C -0.111 4.111 23 S -0.144 6.144 24 H 0.068 0.932 25 H 0.064 0.936 26 H 0.064 0.936 27 H 0.083 0.917 28 H 0.069 0.931 29 H 0.039 0.961 30 H 0.092 0.908 31 H 0.073 0.927 32 H 0.038 0.962 33 H 0.016 0.984 34 H 0.023 0.977 35 H 0.263 0.737 36 H 0.134 0.866 37 H 0.122 0.878 38 H 0.123 0.877 39 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.627 15.467 -10.187 20.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.191 4.191 3 H 0.100 0.900 4 C -0.155 4.155 5 C -0.065 4.065 6 N -0.208 5.208 7 C -0.057 4.057 8 C -0.042 4.042 9 C -0.562 4.562 10 H 0.089 0.911 11 C -0.132 4.132 12 N -0.541 5.541 13 Si 0.708 3.292 14 H -0.202 1.202 15 H -0.215 1.215 16 H -0.189 1.189 17 C 0.044 3.956 18 C -0.189 4.189 19 C -0.106 4.106 20 C -0.169 4.169 21 C -0.085 4.085 22 C -0.224 4.224 23 S 0.092 5.908 24 H 0.087 0.913 25 H 0.083 0.917 26 H 0.083 0.917 27 H 0.101 0.899 28 H 0.088 0.912 29 H 0.057 0.943 30 H 0.110 0.890 31 H 0.091 0.909 32 H 0.056 0.944 33 H 0.034 0.966 34 H 0.041 0.959 35 H 0.073 0.927 36 H 0.152 0.848 37 H 0.140 0.860 38 H 0.141 0.859 39 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -10.562 14.141 -10.846 20.716 hybrid contribution 0.610 0.797 1.265 1.615 sum -9.953 14.938 -9.581 20.347 Atomic orbital electron populations 1.21618 0.91859 1.03004 1.02456 1.23018 0.99124 1.00879 0.96054 0.89969 1.21304 0.95492 1.02610 0.96067 1.21834 0.93318 0.95439 0.95943 1.59608 1.24983 1.28123 1.08040 1.22395 0.89370 0.96588 0.97334 1.19547 0.97337 0.92815 0.94458 1.21028 0.93757 1.12518 1.28847 0.91099 1.24971 0.96751 0.96308 0.95164 1.69914 1.29697 1.21925 1.32579 0.86764 0.85340 0.79676 0.77450 1.20153 1.21482 1.18914 1.19182 0.92342 0.90329 0.93748 1.21914 0.96915 0.99601 1.00451 1.21140 0.99389 0.96476 0.93594 1.21146 0.93460 1.02470 0.99816 1.21180 0.96191 0.94515 0.96641 1.21059 0.97420 1.05304 0.98659 1.85641 1.06225 1.64075 1.34896 0.91305 0.91685 0.91677 0.89872 0.91249 0.94265 0.89009 0.90860 0.94405 0.96560 0.95898 0.92679 0.84842 0.86022 0.85853 0.85120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.27 9.13 37.16 0.34 -0.93 16 2 C -0.06 -0.76 2.88 -27.38 -0.08 -0.84 16 3 H 0.08 0.98 8.13 -51.93 -0.42 0.56 16 4 C -0.12 -1.55 4.66 -28.24 -0.13 -1.68 16 5 C 0.06 0.93 5.11 -4.64 -0.02 0.90 16 6 N -0.49 -8.71 4.01 -171.89 -0.69 -9.40 16 7 C 0.07 1.38 3.41 -3.82 -0.01 1.37 16 8 C 0.00 -0.09 4.14 -27.88 -0.12 -0.21 16 9 C -0.52 -14.77 9.66 -34.44 -0.33 -15.10 16 10 H 0.07 2.13 7.99 -52.49 -0.42 1.72 16 11 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 12 N -0.90 -27.73 13.96 55.43 0.77 -26.96 16 13 Si 0.88 21.87 27.47 -169.99 -4.67 17.20 16 14 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 15 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 16 H -0.26 -6.30 6.54 56.52 0.37 -5.93 16 17 C 0.14 2.36 4.80 -83.49 -0.40 1.96 16 18 C -0.17 -2.49 8.75 -39.22 -0.34 -2.84 16 19 C -0.09 -1.08 10.01 -39.56 -0.40 -1.47 16 20 C -0.15 -1.71 10.07 -39.45 -0.40 -2.10 16 21 C -0.06 -0.81 9.85 -39.44 -0.39 -1.20 16 22 C -0.11 -1.68 5.62 -39.58 -0.22 -1.90 16 23 S -0.14 -2.10 20.86 -107.50 -2.24 -4.34 16 24 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.08 1.27 8.13 -51.93 -0.42 0.85 16 28 H 0.07 0.78 8.07 -51.93 -0.42 0.36 16 29 H 0.04 0.57 7.68 -51.93 -0.40 0.17 16 30 H 0.09 1.49 6.49 -51.93 -0.34 1.15 16 31 H 0.07 1.51 7.19 -51.93 -0.37 1.14 16 32 H 0.04 0.73 7.47 -51.93 -0.39 0.35 16 33 H 0.02 0.38 6.00 -51.93 -0.31 0.07 16 34 H 0.02 0.57 7.57 -51.93 -0.39 0.17 16 35 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 36 H 0.13 2.01 6.15 -52.49 -0.32 1.69 16 37 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 38 H 0.12 1.07 8.06 -52.49 -0.42 0.64 16 39 H 0.13 1.39 8.06 -52.49 -0.42 0.97 16 LS Contribution 318.37 15.07 4.80 4.80 Total: -1.00 -30.91 318.37 -10.54 -41.45 By element: Atomic # 1 Polarization: 5.28 SS G_CDS: -5.91 Total: -0.63 kcal Atomic # 6 Polarization: -19.51 SS G_CDS: -2.60 Total: -22.12 kcal Atomic # 7 Polarization: -36.45 SS G_CDS: 0.08 Total: -36.36 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -4.67 Total: 17.20 kcal Atomic # 16 Polarization: -2.10 SS G_CDS: -2.24 Total: -4.34 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -30.91 -10.54 -41.45 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078525394.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.370 kcal (2) G-P(sol) polarization free energy of solvation -30.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.452 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds