Wall clock time and date at job start Mon Mar 30 2020 02:05:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42900 * 113.99717 * 2 1 4 4 C 1.53003 * 109.46856 * 179.97438 * 3 2 1 5 5 N 1.46899 * 109.47323 * 65.57462 * 4 3 2 6 6 C 1.46894 * 111.00273 * 163.48787 * 5 4 3 7 7 C 1.50695 * 109.47559 * 195.82021 * 6 5 4 8 8 H 1.08002 * 120.00026 * 5.06658 * 7 6 5 9 9 C 1.37879 * 120.00147 * 185.07397 * 7 6 5 10 10 N 1.31509 * 120.00297 * 359.97438 * 9 7 6 11 11 Si 1.86802 * 120.00007 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.46803 * 59.99775 * 11 9 7 13 13 H 1.48494 * 109.47149 * 179.97438 * 11 9 7 14 14 H 1.48500 * 109.47280 * 299.99848 * 11 9 7 15 15 C 1.38502 * 110.99775 * 287.44683 * 5 4 3 16 16 N 1.31813 * 120.28151 * 298.36139 * 15 5 4 17 17 C 1.33747 * 121.30317 * 180.02562 * 16 15 5 18 18 C 1.34754 * 121.43375 * 0.03120 * 17 16 15 19 19 N 1.36983 * 119.84319 * 359.96941 * 18 17 16 20 20 C 1.34780 * 134.71403 * 179.97438 * 19 18 17 21 21 N 1.31080 * 107.59557 * 180.02562 * 20 19 18 22 22 N 1.28793 * 110.14658 * 0.02562 * 21 20 19 23 23 C 1.31882 * 109.31146 * 359.72671 * 22 21 20 24 24 H 1.09002 * 109.47451 * 300.00566 * 1 2 3 25 25 H 1.09004 * 109.46873 * 60.00589 * 1 2 3 26 26 H 1.08996 * 109.46979 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.47577 * 59.99785 * 3 2 1 28 28 H 1.09002 * 109.46893 * 299.98892 * 3 2 1 29 29 H 1.09009 * 109.46840 * 185.57319 * 4 3 2 30 30 H 1.08993 * 109.47235 * 305.57130 * 4 3 2 31 31 H 1.09005 * 109.47596 * 315.81935 * 6 5 4 32 32 H 1.09004 * 109.47038 * 75.81662 * 6 5 4 33 33 H 0.96994 * 120.00610 * 180.02562 * 10 9 7 34 34 H 1.08008 * 119.28700 * 180.02562 * 17 16 15 35 35 H 1.07997 * 120.08325 * 179.97438 * 18 17 16 36 36 H 1.07994 * 126.20068 * 0.03026 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 7 3.9789 0.5749 -1.2601 6 6 5.4158 0.7929 -1.4736 7 6 5.7581 0.5119 -2.9140 8 1 4.9741 0.2821 -3.6204 9 6 7.0721 0.5480 -3.3300 10 7 8.0268 0.8282 -2.4700 11 14 7.4964 0.1989 -5.1154 12 1 6.8162 1.1890 -5.9885 13 1 8.9658 0.3004 -5.3040 14 1 7.0443 -1.1696 -5.4732 15 6 3.6713 -0.7751 -1.2936 16 7 4.1895 -1.5972 -0.4030 17 6 3.9069 -2.9044 -0.4166 18 6 3.0821 -3.4354 -1.3405 19 7 2.5142 -2.6292 -2.2912 20 6 1.6733 -2.8297 -3.3253 21 7 1.4693 -1.6698 -3.9008 22 7 2.1324 -0.7493 -3.2910 23 6 2.7937 -1.2834 -2.2827 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0276 0.0005 27 1 1.6886 1.8464 0.8899 28 1 1.6887 1.8463 -0.8901 29 1 3.9784 2.1757 0.1005 30 1 3.8501 0.5602 0.8367 31 1 5.6657 1.8270 -1.2359 32 1 5.9847 0.1241 -0.8277 33 1 8.9511 0.8540 -2.7628 34 1 4.3494 -3.5484 0.3290 35 1 2.8692 -4.4942 -1.3315 36 1 1.2452 -3.7746 -3.6253 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079455254.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:13 Heat of formation + Delta-G solvation = 104.001397 kcal Electronic energy + Delta-G solvation = -22462.367963 eV Core-core repulsion = 19178.011868 eV Total energy + Delta-G solvation = -3284.356095 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.128 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -43.25929 -39.21800 -37.76171 -36.42313 -33.62019 -32.62283 -30.88407 -29.77841 -29.12576 -26.66885 -25.98822 -24.29215 -23.62002 -22.37049 -22.14388 -20.77136 -18.36095 -17.47310 -16.49221 -16.38229 -16.16767 -15.87051 -15.59267 -15.13749 -14.69749 -14.60161 -14.28713 -13.81738 -13.39260 -12.74226 -12.51727 -12.13807 -11.83911 -11.52659 -11.48543 -11.38142 -11.25974 -10.95657 -10.65701 -10.61556 -10.26041 -10.00332 -9.62870 -9.53327 -9.41025 -9.21800 -8.47929 -7.83472 -7.76943 -6.05903 -4.07231 0.87206 1.54393 2.56844 3.10600 3.34692 3.37216 3.43384 3.87354 4.00555 4.07379 4.42445 4.45762 4.61774 4.82161 4.93651 5.25811 5.30129 5.36390 5.39417 5.46137 5.55245 5.65263 5.70221 5.74284 5.83669 6.04745 6.20811 6.27297 6.32378 6.99650 7.04606 7.27748 7.34248 7.66394 7.95008 8.01277 8.11342 8.35588 8.90866 9.01743 9.57175 11.04296 Molecular weight = 277.13amu Principal moments of inertia in cm(-1) A = 0.016643 B = 0.007687 C = 0.006557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1681.994331 B = 3641.487102 C = 4269.425231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.390 6.390 3 C 0.061 3.939 4 C 0.061 3.939 5 N -0.486 5.486 6 C 0.197 3.803 7 C -0.514 4.514 8 H 0.065 0.935 9 C 0.061 3.939 10 N -0.895 5.895 11 Si 0.896 3.104 12 H -0.272 1.272 13 H -0.286 1.286 14 H -0.280 1.280 15 C 0.482 3.518 16 N -0.506 5.506 17 C 0.081 3.919 18 C -0.036 4.036 19 N -0.372 5.372 20 C 0.107 3.893 21 N -0.266 5.266 22 N -0.234 5.234 23 C 0.183 3.817 24 H 0.037 0.963 25 H 0.041 0.959 26 H 0.073 0.927 27 H 0.050 0.950 28 H 0.063 0.937 29 H 0.099 0.901 30 H 0.056 0.944 31 H 0.041 0.959 32 H 0.021 0.979 33 H 0.263 0.737 34 H 0.173 0.827 35 H 0.169 0.831 36 H 0.221 0.779 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.352 -7.095 6.866 15.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.309 6.309 3 C -0.016 4.016 4 C -0.066 4.066 5 N -0.211 5.211 6 C 0.075 3.925 7 C -0.553 4.553 8 H 0.083 0.917 9 C -0.141 4.141 10 N -0.534 5.534 11 Si 0.724 3.276 12 H -0.198 1.198 13 H -0.212 1.212 14 H -0.206 1.206 15 C 0.227 3.773 16 N -0.223 5.223 17 C -0.060 4.060 18 C -0.159 4.159 19 N -0.054 5.054 20 C -0.176 4.176 21 N -0.108 5.108 22 N -0.083 5.083 23 C -0.072 4.072 24 H 0.055 0.945 25 H 0.060 0.940 26 H 0.091 0.909 27 H 0.068 0.932 28 H 0.081 0.919 29 H 0.117 0.883 30 H 0.074 0.926 31 H 0.059 0.941 32 H 0.039 0.961 33 H 0.072 0.928 34 H 0.190 0.810 35 H 0.186 0.814 36 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -12.311 -5.866 6.136 14.954 hybrid contribution 0.481 -1.861 -0.153 1.928 sum -11.830 -7.727 5.983 15.344 Atomic orbital electron populations 1.22596 0.81795 1.01764 0.99697 1.87869 1.19077 1.28617 1.95313 1.22749 0.93958 0.84545 1.00309 1.22264 0.92836 1.00834 0.90704 1.60023 1.23593 1.05036 1.32476 1.20016 0.76727 0.97870 0.97899 1.21152 0.92451 1.47634 0.94047 0.91660 1.24912 0.96158 0.95225 0.97771 1.69932 1.00246 1.48948 1.34296 0.86580 0.77004 0.78972 0.85077 1.19776 1.21181 1.20566 1.18981 0.83550 0.91137 0.83653 1.68513 1.24038 1.04012 1.25769 1.22015 0.94909 0.91934 0.97094 1.22273 1.02878 0.97569 0.93202 1.43637 1.30799 1.09677 1.21240 1.26117 0.99316 1.02058 0.90154 1.74469 1.17827 0.96351 1.22189 1.74881 1.07991 1.21634 1.03783 1.22852 1.03095 0.80779 1.00486 0.94478 0.94024 0.90868 0.93196 0.91878 0.88289 0.92602 0.94100 0.96092 0.92752 0.81029 0.81378 0.76296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.50 11.01 101.05 1.11 1.61 16 2 O -0.39 -6.47 8.31 -35.23 -0.29 -6.76 16 3 C 0.06 0.95 6.23 37.16 0.23 1.18 16 4 C 0.06 1.09 5.50 -3.82 -0.02 1.06 16 5 N -0.49 -10.83 4.42 -174.05 -0.77 -11.60 16 6 C 0.20 5.11 4.70 -4.98 -0.02 5.08 16 7 C -0.51 -14.80 8.83 -34.44 -0.30 -15.11 16 8 H 0.07 1.96 7.81 -52.49 -0.41 1.55 16 9 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 10 N -0.90 -26.45 13.29 55.43 0.74 -25.71 16 11 Si 0.90 22.52 29.54 -169.99 -5.02 17.50 16 12 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 13 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 14 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 15 C 0.48 10.40 3.20 -155.03 -0.50 9.90 16 16 N -0.51 -10.12 9.28 -12.43 -0.12 -10.23 16 17 C 0.08 1.24 11.06 -17.95 -0.20 1.04 16 18 C -0.04 -0.49 11.06 -16.49 -0.18 -0.68 16 19 N -0.37 -6.36 2.95 -63.99 -0.19 -6.54 16 20 C 0.11 1.64 12.97 -90.13 -1.17 0.48 16 21 N -0.27 -5.16 12.21 29.64 0.36 -4.80 16 22 N -0.23 -5.21 12.30 31.27 0.38 -4.82 16 23 C 0.18 3.85 7.18 -155.98 -1.12 2.73 16 24 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 27 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 28 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 29 H 0.10 1.60 7.72 -51.92 -0.40 1.20 16 30 H 0.06 1.01 7.56 -51.93 -0.39 0.62 16 31 H 0.04 1.07 7.72 -51.93 -0.40 0.67 16 32 H 0.02 0.59 7.60 -51.93 -0.39 0.19 16 33 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 34 H 0.17 1.90 8.06 -52.48 -0.42 1.48 16 35 H 0.17 1.43 8.06 -52.49 -0.42 1.01 16 36 H 0.22 2.09 8.06 -52.49 -0.42 1.67 16 LS Contribution 312.43 15.07 4.71 4.71 Total: -1.00 -35.15 312.43 -6.98 -42.13 By element: Atomic # 1 Polarization: 1.68 SS G_CDS: -4.52 Total: -2.84 kcal Atomic # 6 Polarization: 11.24 SS G_CDS: -2.27 Total: 8.98 kcal Atomic # 7 Polarization: -64.13 SS G_CDS: 0.41 Total: -63.72 kcal Atomic # 8 Polarization: -6.47 SS G_CDS: -0.29 Total: -6.76 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.50 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -35.15 -6.98 -42.13 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079455254.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.136 kcal (2) G-P(sol) polarization free energy of solvation -35.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.134 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds