Wall clock time and date at job start Mon Mar 30 2020 02:05:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42900 * 113.99717 * 2 1 4 4 C 1.53003 * 109.46856 * 179.97438 * 3 2 1 5 5 N 1.46899 * 109.47323 * 65.57462 * 4 3 2 6 6 C 1.46894 * 111.00273 * 163.48787 * 5 4 3 7 7 C 1.50695 * 109.47559 * 195.82021 * 6 5 4 8 8 H 1.08002 * 120.00026 * 5.06658 * 7 6 5 9 9 C 1.37879 * 120.00147 * 185.07397 * 7 6 5 10 10 N 1.31509 * 120.00297 * 359.97438 * 9 7 6 11 11 Si 1.86802 * 120.00007 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.46803 * 59.99775 * 11 9 7 13 13 H 1.48494 * 109.47149 * 179.97438 * 11 9 7 14 14 H 1.48500 * 109.47280 * 299.99848 * 11 9 7 15 15 C 1.38502 * 110.99775 * 287.44683 * 5 4 3 16 16 N 1.31813 * 120.28151 * 298.36139 * 15 5 4 17 17 C 1.33747 * 121.30317 * 180.02562 * 16 15 5 18 18 C 1.34754 * 121.43375 * 0.03120 * 17 16 15 19 19 N 1.36983 * 119.84319 * 359.96941 * 18 17 16 20 20 C 1.34780 * 134.71403 * 179.97438 * 19 18 17 21 21 N 1.31080 * 107.59557 * 180.02562 * 20 19 18 22 22 N 1.28793 * 110.14658 * 0.02562 * 21 20 19 23 23 C 1.31882 * 109.31146 * 359.72671 * 22 21 20 24 24 H 1.09002 * 109.47451 * 300.00566 * 1 2 3 25 25 H 1.09004 * 109.46873 * 60.00589 * 1 2 3 26 26 H 1.08996 * 109.46979 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.47577 * 59.99785 * 3 2 1 28 28 H 1.09002 * 109.46893 * 299.98892 * 3 2 1 29 29 H 1.09009 * 109.46840 * 185.57319 * 4 3 2 30 30 H 1.08993 * 109.47235 * 305.57130 * 4 3 2 31 31 H 1.09005 * 109.47596 * 315.81935 * 6 5 4 32 32 H 1.09004 * 109.47038 * 75.81662 * 6 5 4 33 33 H 0.96994 * 120.00610 * 180.02562 * 10 9 7 34 34 H 1.08008 * 119.28700 * 180.02562 * 17 16 15 35 35 H 1.07997 * 120.08325 * 179.97438 * 18 17 16 36 36 H 1.07994 * 126.20068 * 0.03026 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 7 3.9789 0.5749 -1.2601 6 6 5.4158 0.7929 -1.4736 7 6 5.7581 0.5119 -2.9140 8 1 4.9741 0.2821 -3.6204 9 6 7.0721 0.5480 -3.3300 10 7 8.0268 0.8282 -2.4700 11 14 7.4964 0.1989 -5.1154 12 1 6.8162 1.1890 -5.9885 13 1 8.9658 0.3004 -5.3040 14 1 7.0443 -1.1696 -5.4732 15 6 3.6713 -0.7751 -1.2936 16 7 4.1895 -1.5972 -0.4030 17 6 3.9069 -2.9044 -0.4166 18 6 3.0821 -3.4354 -1.3405 19 7 2.5142 -2.6292 -2.2912 20 6 1.6733 -2.8297 -3.3253 21 7 1.4693 -1.6698 -3.9008 22 7 2.1324 -0.7493 -3.2910 23 6 2.7937 -1.2834 -2.2827 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0276 0.0005 27 1 1.6886 1.8464 0.8899 28 1 1.6887 1.8463 -0.8901 29 1 3.9784 2.1757 0.1005 30 1 3.8501 0.5602 0.8367 31 1 5.6657 1.8270 -1.2359 32 1 5.9847 0.1241 -0.8277 33 1 8.9511 0.8540 -2.7628 34 1 4.3494 -3.5484 0.3290 35 1 2.8692 -4.4942 -1.3315 36 1 1.2452 -3.7746 -3.6253 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000079455254.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:13 Heat of formation + Delta-G solvation = 79.298431 kcal Electronic energy + Delta-G solvation = -22463.439164 eV Core-core repulsion = 19178.011868 eV Total energy + Delta-G solvation = -3285.427296 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.128 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -44.60160 -40.63721 -39.00916 -37.84162 -35.17753 -34.60270 -32.22166 -31.22586 -30.58641 -28.40034 -27.19018 -25.83758 -24.91954 -24.08970 -23.57885 -22.17300 -19.68717 -19.00335 -18.25326 -17.83538 -17.60257 -17.23705 -16.96186 -16.57432 -16.23100 -15.89827 -15.46657 -15.41192 -14.71497 -14.39578 -14.09173 -13.57244 -13.51834 -13.16382 -12.94841 -12.78907 -12.74679 -12.59331 -12.47650 -12.12017 -12.06728 -11.61661 -11.41408 -11.02791 -10.79081 -10.66899 -10.53909 -9.46549 -9.10803 -8.25670 -6.34255 -0.44880 0.23145 1.31816 1.32810 1.34670 1.43664 1.80626 2.32839 2.50601 2.65857 2.87746 3.06885 3.18840 3.48314 3.54759 3.82671 4.03524 4.18745 4.30140 4.32519 4.41038 4.46458 4.52602 4.62080 4.68254 4.74115 4.87794 4.92695 5.04498 5.06310 5.26270 5.57345 5.87218 5.92745 6.17784 6.26536 6.42172 6.76202 6.82732 7.33853 7.54158 8.84345 Molecular weight = 277.13amu Principal moments of inertia in cm(-1) A = 0.016643 B = 0.007687 C = 0.006557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1681.994331 B = 3641.487102 C = 4269.425231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.412 6.412 3 C 0.071 3.929 4 C 0.058 3.942 5 N -0.498 5.498 6 C 0.218 3.782 7 C -0.526 4.526 8 H 0.045 0.955 9 C 0.016 3.984 10 N -0.922 5.922 11 Si 0.954 3.046 12 H -0.271 1.271 13 H -0.271 1.271 14 H -0.281 1.281 15 C 0.445 3.555 16 N -0.521 5.521 17 C 0.046 3.954 18 C -0.002 4.002 19 N -0.380 5.380 20 C 0.135 3.865 21 N -0.302 5.302 22 N -0.285 5.285 23 C 0.165 3.835 24 H 0.062 0.938 25 H 0.031 0.969 26 H 0.081 0.919 27 H 0.085 0.915 28 H 0.049 0.951 29 H 0.106 0.894 30 H 0.050 0.950 31 H 0.026 0.974 32 H -0.007 1.007 33 H 0.267 0.733 34 H 0.214 0.786 35 H 0.234 0.766 36 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.482 -9.811 6.994 18.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.331 6.331 3 C -0.006 4.006 4 C -0.068 4.068 5 N -0.222 5.222 6 C 0.093 3.907 7 C -0.565 4.565 8 H 0.063 0.937 9 C -0.183 4.183 10 N -0.562 5.562 11 Si 0.779 3.221 12 H -0.196 1.196 13 H -0.195 1.195 14 H -0.207 1.207 15 C 0.189 3.811 16 N -0.238 5.238 17 C -0.093 4.093 18 C -0.124 4.124 19 N -0.061 5.061 20 C -0.149 4.149 21 N -0.142 5.142 22 N -0.134 5.134 23 C -0.091 4.091 24 H 0.080 0.920 25 H 0.050 0.950 26 H 0.099 0.901 27 H 0.103 0.897 28 H 0.067 0.933 29 H 0.124 0.876 30 H 0.068 0.932 31 H 0.044 0.956 32 H 0.011 0.989 33 H 0.076 0.924 34 H 0.230 0.770 35 H 0.250 0.750 36 H 0.297 0.703 Dipole moment (debyes) X Y Z Total from point charges -13.473 -8.570 6.259 17.151 hybrid contribution 0.737 -1.214 -0.125 1.426 sum -12.736 -9.784 6.133 17.191 Atomic orbital electron populations 1.22711 0.80176 1.02558 1.00425 1.87840 1.20870 1.28907 1.95480 1.22635 0.92108 0.84635 1.01200 1.22385 0.94771 1.00702 0.88971 1.59796 1.20705 1.07013 1.34716 1.19533 0.79385 0.95931 0.95804 1.21296 0.92262 1.47794 0.95130 0.93658 1.25651 0.96023 0.94994 1.01649 1.70019 1.00587 1.49581 1.35973 0.85676 0.77479 0.78519 0.80394 1.19560 1.19527 1.20659 1.18806 0.86037 0.90819 0.85465 1.68388 1.23800 1.06292 1.25366 1.22782 0.96524 0.90703 0.99321 1.23295 0.99331 0.99714 0.90091 1.43992 1.31127 1.08768 1.22214 1.27252 0.96850 1.02809 0.87981 1.74343 1.18806 0.97663 1.23406 1.74785 1.09853 1.23447 1.05275 1.22763 1.03375 0.82661 1.00253 0.91963 0.94983 0.90064 0.89697 0.93304 0.87577 0.93173 0.95643 0.98888 0.92386 0.77002 0.74953 0.70317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.93 11.01 113.37 1.25 2.18 16 2 O -0.41 -13.51 8.31 -148.98 -1.24 -14.75 16 3 C 0.07 2.22 6.23 71.98 0.45 2.67 16 4 C 0.06 2.16 5.50 86.30 0.47 2.64 16 5 N -0.50 -23.17 4.42 -704.57 -3.11 -26.29 16 6 C 0.22 11.86 4.70 85.56 0.40 12.26 16 7 C -0.53 -31.46 8.83 25.60 0.23 -31.23 16 8 H 0.05 2.84 7.81 -2.91 -0.02 2.82 16 9 C 0.02 0.95 5.46 84.66 0.46 1.41 16 10 N -0.92 -55.57 13.29 21.45 0.28 -55.29 16 11 Si 0.95 46.75 29.54 68.60 2.03 48.78 16 12 H -0.27 -13.07 7.11 99.48 0.71 -12.36 16 13 H -0.27 -12.47 7.11 99.48 0.71 -11.77 16 14 H -0.28 -13.69 7.11 99.48 0.71 -12.99 16 15 C 0.44 19.50 3.20 134.04 0.43 19.93 16 16 N -0.52 -20.78 9.28 -193.22 -1.79 -22.57 16 17 C 0.05 1.29 11.06 83.60 0.92 2.21 16 18 C 0.00 -0.05 11.06 83.09 0.92 0.87 16 19 N -0.38 -11.91 2.95 -356.36 -1.05 -12.96 16 20 C 0.13 3.69 12.97 180.18 2.34 6.03 16 21 N -0.30 -11.47 12.21 -60.12 -0.73 -12.20 16 22 N -0.28 -12.93 12.30 -54.99 -0.68 -13.60 16 23 C 0.16 6.95 7.18 134.37 0.97 7.91 16 24 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 25 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 26 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 27 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 28 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 29 H 0.11 3.61 7.72 -2.38 -0.02 3.59 16 30 H 0.05 1.88 7.56 -2.39 -0.02 1.86 16 31 H 0.03 1.43 7.72 -2.38 -0.02 1.41 16 32 H -0.01 -0.40 7.60 -2.38 -0.02 -0.42 16 33 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 34 H 0.21 3.91 8.06 -2.91 -0.02 3.89 16 35 H 0.23 2.22 8.06 -2.91 -0.02 2.19 16 36 H 0.28 3.62 8.06 -2.91 -0.02 3.60 16 Total: -1.00 -81.97 312.43 3.63 -78.34 By element: Atomic # 1 Polarization: 2.57 SS G_CDS: 1.09 Total: 3.66 kcal Atomic # 6 Polarization: 18.05 SS G_CDS: 8.84 Total: 26.89 kcal Atomic # 7 Polarization: -135.83 SS G_CDS: -7.08 Total: -142.92 kcal Atomic # 8 Polarization: -13.51 SS G_CDS: -1.24 Total: -14.75 kcal Atomic # 14 Polarization: 46.75 SS G_CDS: 2.03 Total: 48.78 kcal Total: -81.97 3.63 -78.34 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079455254.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.641 kcal (2) G-P(sol) polarization free energy of solvation -81.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.343 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds