Wall clock time and date at job start Mon Mar 30 2020 01:43:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09005 * 109.60481 * 2 1 4 4 C 1.52254 * 109.61093 * 239.66691 * 2 1 3 5 5 C 1.39007 * 124.27884 * 42.88070 * 4 2 1 6 6 C 1.33020 * 115.66466 * 180.10641 * 5 4 2 7 7 S 1.75794 * 109.60158 * 359.97438 * 6 5 4 8 8 C 1.34798 * 122.07134 * 222.93494 * 4 2 1 9 9 C 1.51408 * 123.96355 * 359.87775 * 8 4 2 10 10 C 1.53353 * 108.07048 * 344.47738 * 9 8 4 11 11 N 1.46864 * 109.62904 * 120.43754 * 2 1 3 12 12 C 1.46904 * 111.05113 * 296.54090 * 11 2 1 13 13 C 1.53001 * 109.47105 * 302.35830 * 12 11 2 14 14 C 1.50700 * 115.54830 * 294.53500 * 13 12 11 15 15 H 1.08004 * 120.00236 * 143.84216 * 14 13 12 16 16 C 1.37873 * 120.00115 * 323.84005 * 14 13 12 17 17 N 1.31515 * 120.00431 * 164.13596 * 16 14 13 18 18 Si 1.86798 * 119.99869 * 344.13768 * 16 14 13 19 19 H 1.48498 * 109.47142 * 95.56521 * 18 16 14 20 20 H 1.48505 * 109.47378 * 215.56491 * 18 16 14 21 21 H 1.48505 * 109.47196 * 335.56587 * 18 16 14 22 22 C 1.52997 * 117.49938 * 148.86277 * 13 12 11 23 23 C 1.53002 * 117.49941 * 80.19863 * 13 12 11 24 24 H 1.09003 * 109.46725 * 180.33557 * 1 2 3 25 25 H 1.08998 * 109.47459 * 300.33380 * 1 2 3 26 26 H 1.08998 * 109.47306 * 60.33975 * 1 2 3 27 27 H 1.08008 * 122.17073 * 0.12145 * 5 4 2 28 28 H 1.07998 * 125.20270 * 179.97438 * 6 5 4 29 29 H 1.08999 * 109.74332 * 224.83071 * 9 8 4 30 30 H 1.09001 * 109.74074 * 104.12091 * 9 8 4 31 31 H 1.09001 * 109.53778 * 168.71769 * 10 9 8 32 32 H 1.08997 * 109.53589 * 288.87876 * 10 9 8 33 33 H 1.09002 * 109.47369 * 62.35473 * 12 11 2 34 34 H 1.08992 * 109.46803 * 182.36066 * 12 11 2 35 35 H 0.96997 * 120.00501 * 179.97438 * 17 16 14 36 36 H 1.08994 * 117.49866 * 359.97438 * 22 13 12 37 37 H 1.08997 * 117.49645 * 145.02277 * 22 13 12 38 38 H 1.08995 * 117.50442 * 214.97813 * 23 13 12 39 39 H 1.09006 * 117.50017 * 359.97438 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8958 1.0269 0.0000 4 6 2.0410 -0.7243 -1.2379 5 6 1.5109 -0.5648 -2.5130 6 6 2.0885 -1.2844 -3.4711 7 16 3.3911 -2.2442 -2.7839 8 6 3.0690 -1.5946 -1.1846 9 6 3.8185 -1.9418 0.0843 10 6 3.4810 -0.8828 1.1409 11 7 2.0234 -0.7008 1.1927 12 6 1.6236 0.0007 2.4200 13 6 2.1528 1.4357 2.3826 14 6 3.6530 1.5763 2.4131 15 1 4.1337 2.3589 1.8449 16 6 4.4117 0.7058 3.1663 17 7 5.7077 0.6163 2.9612 18 14 3.5990 -0.3467 4.4782 19 1 3.2859 -1.6848 3.9155 20 1 4.5209 -0.4986 5.6324 21 1 2.3440 0.3064 4.9296 22 6 1.3280 2.5116 3.0918 23 6 1.3641 2.4585 1.5623 24 1 -0.3633 -1.0277 0.0060 25 1 -0.3634 0.5190 0.8869 26 1 -0.3634 0.5085 -0.8930 27 1 0.6839 0.1005 -2.7129 28 1 1.8011 -1.2798 -4.5122 29 1 4.8912 -1.9399 -0.1094 30 1 3.5092 -2.9256 0.4372 31 1 3.8419 -1.2121 2.1153 32 1 3.9571 0.0612 0.8759 33 1 0.5361 0.0163 2.4918 34 1 2.0376 -0.5168 3.2853 35 1 6.2416 0.0042 3.4914 36 1 0.4081 2.1971 3.5846 37 1 1.8703 3.3212 3.5800 38 1 1.9300 3.2332 1.0451 39 1 0.4683 2.1088 1.0489 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088259431.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:19 Heat of formation + Delta-G solvation = 70.426453 kcal Electronic energy + Delta-G solvation = -20794.907157 eV Core-core repulsion = 18023.095606 eV Total energy + Delta-G solvation = -2771.811550 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 277.120 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.15599 -38.72525 -36.19305 -34.69908 -33.50897 -31.78149 -28.36390 -27.84233 -27.08077 -24.54106 -23.22485 -22.99685 -21.86837 -20.86998 -18.73112 -18.33527 -17.86086 -17.62359 -16.47518 -16.02635 -15.83213 -15.46985 -15.11979 -14.91340 -14.47563 -14.30702 -13.86900 -13.42959 -13.40353 -13.30659 -13.22832 -12.81913 -12.60833 -12.43514 -12.06636 -12.00678 -11.97347 -11.88602 -11.57612 -11.36811 -11.20054 -10.93068 -10.53749 -10.26105 -9.38069 -9.24965 -8.90535 -8.33102 -6.20156 0.17275 0.77669 1.16291 1.26532 1.35890 1.43452 1.86316 2.27390 2.80264 3.17000 3.48039 3.86681 3.89775 4.13263 4.19325 4.20212 4.43896 4.44347 4.48682 4.55353 4.62241 4.64619 4.72569 4.82294 4.87354 4.90422 4.99846 5.01723 5.07327 5.16402 5.28344 5.30818 5.38493 5.48387 5.53194 5.61234 5.68480 5.71630 6.23135 6.28963 6.41917 6.71003 7.31490 8.81186 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.021200 B = 0.007924 C = 0.006560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.466803 B = 3532.839475 C = 4267.051160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.134 3.866 3 H 0.056 0.944 4 C -0.110 4.110 5 C -0.129 4.129 6 C -0.210 4.210 7 S 0.087 5.913 8 C -0.191 4.191 9 C -0.045 4.045 10 C 0.065 3.935 11 N -0.521 5.521 12 C 0.081 3.919 13 C -0.047 4.047 14 C -0.487 4.487 15 H 0.027 0.973 16 C 0.048 3.952 17 N -0.922 5.922 18 Si 0.926 3.074 19 H -0.264 1.264 20 H -0.308 1.308 21 H -0.249 1.249 22 C -0.200 4.200 23 C -0.173 4.173 24 H 0.061 0.939 25 H 0.064 0.936 26 H 0.080 0.920 27 H 0.160 0.840 28 H 0.195 0.805 29 H 0.070 0.930 30 H 0.080 0.920 31 H 0.056 0.944 32 H 0.052 0.948 33 H 0.091 0.909 34 H 0.047 0.953 35 H 0.266 0.734 36 H 0.095 0.905 37 H 0.070 0.930 38 H 0.065 0.935 39 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.782 -5.031 -9.563 15.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.024 3.976 3 H 0.074 0.926 4 C -0.122 4.122 5 C -0.159 4.159 6 C -0.345 4.345 7 S 0.352 5.648 8 C -0.308 4.308 9 C -0.084 4.084 10 C -0.064 4.064 11 N -0.244 5.244 12 C -0.047 4.047 13 C -0.050 4.050 14 C -0.524 4.524 15 H 0.046 0.954 16 C -0.152 4.152 17 N -0.560 5.560 18 Si 0.756 3.244 19 H -0.191 1.191 20 H -0.237 1.237 21 H -0.173 1.173 22 C -0.239 4.239 23 C -0.210 4.210 24 H 0.080 0.920 25 H 0.083 0.917 26 H 0.099 0.901 27 H 0.177 0.823 28 H 0.212 0.788 29 H 0.089 0.911 30 H 0.098 0.902 31 H 0.074 0.926 32 H 0.070 0.930 33 H 0.109 0.891 34 H 0.064 0.936 35 H 0.075 0.925 36 H 0.114 0.886 37 H 0.088 0.912 38 H 0.084 0.916 39 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -9.770 -6.642 -10.173 15.590 hybrid contribution 0.043 1.569 1.536 2.196 sum -9.727 -5.074 -8.637 13.962 Atomic orbital electron populations 1.21834 0.91878 1.02580 1.02670 1.20647 0.96291 0.94849 0.85800 0.92610 1.19905 0.96996 0.99264 0.96075 1.20066 1.02832 1.02446 0.90582 1.25687 1.01118 1.03303 1.04363 1.83811 1.35635 1.46045 0.99275 1.24880 1.02776 1.04633 0.98543 1.20390 0.98011 0.99509 0.90519 1.22335 0.88449 0.98130 0.97483 1.62387 1.12283 1.47796 1.01902 1.21992 0.99786 0.91168 0.91723 1.20005 0.92282 0.90140 1.02523 1.20265 0.89183 1.14649 1.28261 0.95449 1.25435 0.94813 0.97151 0.97790 1.70065 1.07363 1.38311 1.40258 0.86434 0.78716 0.80101 0.79152 1.19070 1.23673 1.17337 1.23120 1.02287 1.03891 0.94562 1.22987 1.02265 1.02470 0.93288 0.91998 0.91721 0.90092 0.82289 0.78788 0.91147 0.90190 0.92598 0.92980 0.89106 0.93571 0.92462 0.88638 0.91177 0.91588 0.87099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.53 7.88 71.98 0.57 -2.96 16 2 C 0.13 4.69 2.01 44.68 0.09 4.78 16 3 H 0.06 2.22 5.22 -2.38 -0.01 2.21 16 4 C -0.11 -3.68 5.45 -19.97 -0.11 -3.79 16 5 C -0.13 -3.39 9.44 21.29 0.20 -3.19 16 6 C -0.21 -4.91 11.21 66.66 0.75 -4.16 16 7 S 0.09 2.40 23.32 -56.49 -1.32 1.08 16 8 C -0.19 -6.69 6.42 25.12 0.16 -6.53 16 9 C -0.04 -1.72 6.50 30.19 0.20 -1.52 16 10 C 0.07 2.94 3.69 86.40 0.32 3.26 16 11 N -0.52 -20.88 4.57 -871.56 -3.98 -24.86 16 12 C 0.08 3.28 4.52 86.30 0.39 3.67 16 13 C -0.05 -2.08 0.79 -52.93 -0.04 -2.12 16 14 C -0.49 -26.48 7.17 25.60 0.18 -26.29 16 15 H 0.03 1.70 8.06 -2.91 -0.02 1.68 16 16 C 0.05 2.64 3.18 84.65 0.27 2.91 16 17 N -0.92 -54.19 13.96 21.45 0.30 -53.89 16 18 Si 0.93 43.85 22.48 68.60 1.54 45.39 16 19 H -0.26 -12.04 6.34 99.48 0.63 -11.40 16 20 H -0.31 -14.82 7.11 99.48 0.71 -14.12 16 21 H -0.25 -11.09 6.88 99.48 0.68 -10.41 16 22 C -0.20 -7.80 9.93 30.62 0.30 -7.50 16 23 C -0.17 -6.51 7.58 30.62 0.23 -6.28 16 24 H 0.06 1.63 8.14 -2.39 -0.02 1.62 16 25 H 0.06 1.67 5.00 -2.39 -0.01 1.66 16 26 H 0.08 1.73 7.20 -2.39 -0.02 1.71 16 27 H 0.16 3.30 7.28 -2.91 -0.02 3.28 16 28 H 0.20 3.07 8.06 -2.91 -0.02 3.05 16 29 H 0.07 2.68 8.14 -2.39 -0.02 2.66 16 30 H 0.08 2.88 8.14 -2.39 -0.02 2.86 16 31 H 0.06 2.72 3.92 -2.39 -0.01 2.71 16 32 H 0.05 2.76 5.64 -2.39 -0.01 2.74 16 33 H 0.09 3.15 6.49 -2.39 -0.02 3.14 16 34 H 0.05 2.03 2.36 -2.39 -0.01 2.02 16 35 H 0.27 14.84 8.31 -92.71 -0.77 14.07 16 36 H 0.10 3.20 8.14 -2.39 -0.02 3.18 16 37 H 0.07 2.89 8.14 -2.39 -0.02 2.87 16 38 H 0.07 2.64 8.14 -2.39 -0.02 2.63 16 39 H 0.11 3.47 5.07 -2.38 -0.01 3.46 16 Total: -1.00 -61.41 291.87 1.02 -60.39 By element: Atomic # 1 Polarization: 20.64 SS G_CDS: 0.97 Total: 21.61 kcal Atomic # 6 Polarization: -53.24 SS G_CDS: 3.51 Total: -49.73 kcal Atomic # 7 Polarization: -75.07 SS G_CDS: -3.68 Total: -78.75 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 1.54 Total: 45.39 kcal Atomic # 16 Polarization: 2.40 SS G_CDS: -1.32 Total: 1.08 kcal Total: -61.41 1.02 -60.39 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088259431.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.814 kcal (2) G-P(sol) polarization free energy of solvation -61.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.388 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds