Wall clock time and date at job start Mon Mar 30 2020 02:16:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86806 * 119.99623 * 2 1 4 4 H 1.48500 * 109.47147 * 240.00483 * 3 2 1 5 5 H 1.48505 * 109.47183 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46835 * 120.00493 * 3 2 1 7 7 C 1.37871 * 120.00491 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00391 * 173.56571 * 7 2 1 9 9 C 1.50703 * 119.99675 * 353.57250 * 7 2 1 10 10 C 1.52997 * 115.55013 * 323.82607 * 9 7 2 11 11 N 1.46903 * 109.47180 * 291.70660 * 10 9 7 12 12 C 1.46843 * 110.99966 * 39.89914 * 11 10 9 13 13 C 1.53041 * 109.52587 * 185.84016 * 12 11 10 14 14 C 1.53120 * 109.27571 * 300.81894 * 13 12 11 15 15 C 1.53002 * 109.52288 * 177.55605 * 14 13 12 16 16 F 1.39900 * 109.47203 * 300.32069 * 15 14 13 17 17 F 1.39907 * 109.46760 * 60.31834 * 15 14 13 18 18 F 1.39898 * 109.47297 * 180.31830 * 15 14 13 19 19 C 1.53125 * 109.15964 * 57.65509 * 14 13 12 20 20 C 1.46846 * 111.00334 * 164.10963 * 11 10 9 21 21 C 1.53002 * 117.50223 * 109.50059 * 9 7 2 22 22 C 1.53001 * 117.49716 * 178.15797 * 9 7 2 23 23 H 0.96996 * 120.00498 * 4.99000 * 1 2 3 24 24 H 1.09002 * 109.47401 * 171.70542 * 10 9 7 25 25 H 1.09002 * 109.47370 * 51.70518 * 10 9 7 26 26 H 1.08998 * 109.46270 * 305.85475 * 12 11 10 27 27 H 1.09003 * 109.46713 * 65.82442 * 12 11 10 28 28 H 1.09000 * 109.50167 * 180.87844 * 13 12 11 29 29 H 1.09000 * 109.50453 * 60.76112 * 13 12 11 30 30 H 1.08998 * 109.52445 * 297.74804 * 14 13 12 31 31 H 1.09001 * 109.50204 * 182.40140 * 19 14 13 32 32 H 1.09003 * 109.50262 * 62.28372 * 19 14 13 33 33 H 1.09009 * 109.45944 * 294.18176 * 20 11 10 34 34 H 1.09005 * 109.46344 * 54.14265 * 20 11 10 35 35 H 1.09001 * 117.49772 * 215.00623 * 21 9 7 36 36 H 1.08997 * 117.49760 * 0.02562 * 21 9 7 37 37 H 1.08995 * 117.50020 * 359.97438 * 22 9 7 38 38 H 1.09007 * 117.49947 * 144.97113 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6966 -1.2126 5 1 1.2840 2.7466 0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0046 -1.1939 -0.0005 8 1 3.0796 -1.1968 -0.1053 9 6 1.2583 -2.4951 0.1450 10 6 0.0485 -2.4607 1.0810 11 7 0.5052 -2.2772 2.4651 12 6 1.6150 -1.3178 2.5302 13 6 2.1591 -1.2613 3.9595 14 6 1.0369 -0.8375 4.9112 15 6 1.5588 -0.8380 6.3494 16 9 2.0015 -2.1222 6.6844 17 9 2.6214 0.0653 6.4603 18 9 0.5307 -0.4577 7.2187 19 6 -0.1262 -1.8258 4.7885 20 6 -0.6039 -1.8660 3.3352 21 6 1.1754 -3.4033 -1.0835 22 6 2.0752 -3.7877 0.0936 23 1 -0.4851 0.8368 -0.0731 24 1 -0.4998 -3.3993 1.0007 25 1 -0.6041 -1.6337 0.8011 26 1 2.4079 -1.6331 1.8520 27 1 1.2588 -0.3300 2.2379 28 1 2.9726 -0.5376 4.0108 29 1 2.5282 -2.2456 4.2476 30 1 0.6941 0.1630 4.6474 31 1 -0.9454 -1.5055 5.4322 32 1 0.2070 -2.8191 5.0896 33 1 -0.9498 -0.8756 3.0390 34 1 -1.4227 -2.5794 3.2416 35 1 0.2590 -3.9762 -1.2249 36 1 1.6611 -3.0600 -1.9969 37 1 3.1524 -3.6970 -0.0458 38 1 1.7510 -4.6135 0.7270 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088420366.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:20 Heat of formation + Delta-G solvation = -125.681710 kcal Electronic energy + Delta-G solvation = -23424.657976 eV Core-core repulsion = 19659.732926 eV Total energy + Delta-G solvation = -3764.925050 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.135 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -49.92024 -47.41634 -47.37362 -38.71122 -36.35955 -32.90839 -32.30019 -30.22650 -27.26441 -25.92554 -24.22941 -22.48432 -21.63546 -21.07330 -19.53029 -18.87040 -18.06586 -17.97395 -17.26096 -16.29370 -15.00722 -14.80112 -14.39120 -14.24935 -14.09657 -13.92498 -13.82472 -13.56469 -13.55231 -13.34091 -13.15014 -12.98054 -12.57380 -12.12990 -11.70242 -11.39399 -11.19909 -11.06387 -10.92989 -10.61113 -10.47563 -10.36381 -10.16578 -9.96763 -9.77256 -9.31620 -8.94037 -8.69793 -8.31195 -7.12695 -6.01486 -4.14499 2.98851 3.18021 3.24535 3.27981 4.02814 4.23838 4.24742 4.28806 4.79228 4.94784 5.07507 5.19547 5.45807 5.57852 5.70396 5.90386 5.99181 6.11731 6.13513 6.23348 6.31469 6.37376 6.46350 6.53028 6.66467 6.76394 6.83194 6.96268 7.12134 7.15742 7.34858 7.45302 7.53271 7.98874 8.22453 8.29467 8.35491 8.74800 9.37278 10.82680 Molecular weight = 277.13amu Principal moments of inertia in cm(-1) A = 0.019266 B = 0.006863 C = 0.005910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.995851 B = 4078.883769 C = 4736.481735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.071 3.929 3 Si 0.883 3.117 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.271 1.271 7 C -0.481 4.481 8 H 0.062 0.938 9 C 0.049 3.951 10 C 0.075 3.925 11 N -0.529 5.529 12 C 0.060 3.940 13 C -0.123 4.123 14 C -0.131 4.131 15 C 0.451 3.549 16 F -0.183 7.183 17 F -0.188 7.188 18 F -0.191 7.191 19 C -0.109 4.109 20 C 0.060 3.940 21 C -0.203 4.203 22 C -0.201 4.201 23 H 0.262 0.738 24 H 0.028 0.972 25 H 0.108 0.892 26 H 0.125 0.875 27 H 0.045 0.955 28 H 0.066 0.934 29 H 0.073 0.927 30 H 0.105 0.895 31 H 0.067 0.933 32 H 0.078 0.922 33 H 0.034 0.966 34 H 0.067 0.933 35 H 0.063 0.937 36 H 0.075 0.925 37 H 0.071 0.929 38 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.011 -1.253 9.134 9.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.131 4.131 3 Si 0.710 3.290 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.196 1.196 7 C -0.518 4.518 8 H 0.080 0.920 9 C 0.049 3.951 10 C -0.052 4.052 11 N -0.254 5.254 12 C -0.067 4.067 13 C -0.161 4.161 14 C -0.150 4.150 15 C 0.397 3.603 16 F -0.165 7.165 17 F -0.169 7.169 18 F -0.172 7.172 19 C -0.147 4.147 20 C -0.068 4.068 21 C -0.241 4.241 22 C -0.239 4.239 23 H 0.073 0.927 24 H 0.046 0.954 25 H 0.126 0.874 26 H 0.143 0.857 27 H 0.064 0.936 28 H 0.085 0.915 29 H 0.092 0.908 30 H 0.124 0.876 31 H 0.086 0.914 32 H 0.096 0.904 33 H 0.052 0.948 34 H 0.085 0.915 35 H 0.082 0.918 36 H 0.093 0.907 37 H 0.089 0.911 38 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 0.004 -1.549 9.399 9.526 hybrid contribution 0.213 1.645 -0.052 1.659 sum 0.218 0.096 9.347 9.350 Atomic orbital electron populations 1.69641 1.05776 1.26591 1.49713 1.24891 0.94824 0.98816 0.94557 0.86784 0.79923 0.83129 0.79156 1.20090 1.21142 1.19596 1.20463 0.93183 0.89116 1.49040 0.91967 1.19041 0.94268 0.88730 0.93096 1.22060 0.97653 1.00580 0.84905 1.62082 1.07294 1.46275 1.09708 1.22815 0.96177 0.95539 0.92181 1.21966 0.95460 1.01706 0.96929 1.22628 1.00154 1.04113 0.88145 1.20909 0.75378 0.73169 0.90839 1.93146 1.89904 1.39530 1.93897 1.93154 1.58591 1.68284 1.96891 1.93139 1.59437 1.91305 1.73332 1.21632 0.95649 0.98812 0.98629 1.21900 0.94529 0.99206 0.91212 1.22931 0.99978 1.07210 0.94022 1.22817 0.96581 1.01737 1.02746 0.92697 0.95387 0.87436 0.85744 0.93646 0.91487 0.90809 0.87634 0.91435 0.90368 0.94828 0.91476 0.91831 0.90655 0.91070 0.91092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -22.21 10.35 55.43 0.57 -21.64 16 2 C 0.07 1.74 3.19 -17.82 -0.06 1.68 16 3 Si 0.88 19.50 29.29 -169.99 -4.98 14.52 16 4 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 5 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 6 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 7 C -0.48 -11.79 5.75 -34.44 -0.20 -11.99 16 8 H 0.06 1.54 7.82 -52.48 -0.41 1.13 16 9 C 0.05 1.14 1.27 -155.66 -0.20 0.94 16 10 C 0.07 1.66 5.03 -3.82 -0.02 1.64 16 11 N -0.53 -10.58 4.84 -234.67 -1.14 -11.72 16 12 C 0.06 1.22 3.86 -3.83 -0.01 1.21 16 13 C -0.12 -2.09 5.13 -26.65 -0.14 -2.22 16 14 C -0.13 -2.00 2.23 -90.49 -0.20 -2.20 16 15 C 0.45 6.60 2.69 37.16 0.10 6.70 16 16 F -0.18 -2.75 16.20 2.25 0.04 -2.71 16 17 F -0.19 -2.84 16.86 2.25 0.04 -2.80 16 18 F -0.19 -2.73 16.85 2.25 0.04 -2.70 16 19 C -0.11 -1.63 5.13 -26.65 -0.14 -1.76 16 20 C 0.06 1.05 5.37 -3.84 -0.02 1.03 16 21 C -0.20 -4.44 9.91 -26.69 -0.26 -4.70 16 22 C -0.20 -4.24 9.94 -26.70 -0.27 -4.51 16 23 H 0.26 6.48 8.32 -40.82 -0.34 6.14 16 24 H 0.03 0.60 8.07 -51.93 -0.42 0.19 16 25 H 0.11 2.65 5.03 -51.93 -0.26 2.38 16 26 H 0.13 2.79 4.78 -51.93 -0.25 2.54 16 27 H 0.05 1.02 5.79 -51.93 -0.30 0.72 16 28 H 0.07 1.10 7.89 -51.93 -0.41 0.69 16 29 H 0.07 1.24 7.73 -51.93 -0.40 0.84 16 30 H 0.11 1.60 8.14 -51.93 -0.42 1.18 16 31 H 0.07 0.89 7.88 -51.93 -0.41 0.48 16 32 H 0.08 1.17 7.74 -51.93 -0.40 0.77 16 33 H 0.03 0.63 8.14 -51.92 -0.42 0.21 16 34 H 0.07 1.10 8.12 -51.93 -0.42 0.68 16 35 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 36 H 0.07 1.66 8.14 -51.93 -0.42 1.24 16 37 H 0.07 1.47 8.14 -51.93 -0.42 1.04 16 38 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 LS Contribution 303.27 15.07 4.57 4.57 Total: -1.00 -24.10 303.27 -7.63 -31.73 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: -5.36 Total: 4.93 kcal Atomic # 6 Polarization: -12.77 SS G_CDS: -1.41 Total: -14.18 kcal Atomic # 7 Polarization: -32.79 SS G_CDS: -0.56 Total: -33.35 kcal Atomic # 9 Polarization: -8.32 SS G_CDS: 0.11 Total: -8.21 kcal Atomic # 14 Polarization: 19.50 SS G_CDS: -4.98 Total: 14.52 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -24.10 -7.63 -31.73 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088420366.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.955 kcal (2) G-P(sol) polarization free energy of solvation -24.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds