Wall clock time and date at job start Mon Mar 30 2020 02:16:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86806 * 119.99623 * 2 1 4 4 H 1.48500 * 109.47147 * 240.00483 * 3 2 1 5 5 H 1.48505 * 109.47183 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46835 * 120.00493 * 3 2 1 7 7 C 1.37871 * 120.00491 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00391 * 173.56571 * 7 2 1 9 9 C 1.50703 * 119.99675 * 353.57250 * 7 2 1 10 10 C 1.52997 * 115.55013 * 323.82607 * 9 7 2 11 11 N 1.46903 * 109.47180 * 291.70660 * 10 9 7 12 12 C 1.46843 * 110.99966 * 39.89914 * 11 10 9 13 13 C 1.53041 * 109.52587 * 185.84016 * 12 11 10 14 14 C 1.53120 * 109.27571 * 300.81894 * 13 12 11 15 15 C 1.53002 * 109.52288 * 177.55605 * 14 13 12 16 16 F 1.39900 * 109.47203 * 300.32069 * 15 14 13 17 17 F 1.39907 * 109.46760 * 60.31834 * 15 14 13 18 18 F 1.39898 * 109.47297 * 180.31830 * 15 14 13 19 19 C 1.53125 * 109.15964 * 57.65509 * 14 13 12 20 20 C 1.46846 * 111.00334 * 164.10963 * 11 10 9 21 21 C 1.53002 * 117.50223 * 109.50059 * 9 7 2 22 22 C 1.53001 * 117.49716 * 178.15797 * 9 7 2 23 23 H 0.96996 * 120.00498 * 4.99000 * 1 2 3 24 24 H 1.09002 * 109.47401 * 171.70542 * 10 9 7 25 25 H 1.09002 * 109.47370 * 51.70518 * 10 9 7 26 26 H 1.08998 * 109.46270 * 305.85475 * 12 11 10 27 27 H 1.09003 * 109.46713 * 65.82442 * 12 11 10 28 28 H 1.09000 * 109.50167 * 180.87844 * 13 12 11 29 29 H 1.09000 * 109.50453 * 60.76112 * 13 12 11 30 30 H 1.08998 * 109.52445 * 297.74804 * 14 13 12 31 31 H 1.09001 * 109.50204 * 182.40140 * 19 14 13 32 32 H 1.09003 * 109.50262 * 62.28372 * 19 14 13 33 33 H 1.09009 * 109.45944 * 294.18176 * 20 11 10 34 34 H 1.09005 * 109.46344 * 54.14265 * 20 11 10 35 35 H 1.09001 * 117.49772 * 215.00623 * 21 9 7 36 36 H 1.08997 * 117.49760 * 0.02562 * 21 9 7 37 37 H 1.08995 * 117.50020 * 359.97438 * 22 9 7 38 38 H 1.09007 * 117.49947 * 144.97113 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6966 -1.2126 5 1 1.2840 2.7466 0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0046 -1.1939 -0.0005 8 1 3.0796 -1.1968 -0.1053 9 6 1.2583 -2.4951 0.1450 10 6 0.0485 -2.4607 1.0810 11 7 0.5052 -2.2772 2.4651 12 6 1.6150 -1.3178 2.5302 13 6 2.1591 -1.2613 3.9595 14 6 1.0369 -0.8375 4.9112 15 6 1.5588 -0.8380 6.3494 16 9 2.0015 -2.1222 6.6844 17 9 2.6214 0.0653 6.4603 18 9 0.5307 -0.4577 7.2187 19 6 -0.1262 -1.8258 4.7885 20 6 -0.6039 -1.8660 3.3352 21 6 1.1754 -3.4033 -1.0835 22 6 2.0752 -3.7877 0.0936 23 1 -0.4851 0.8368 -0.0731 24 1 -0.4998 -3.3993 1.0007 25 1 -0.6041 -1.6337 0.8011 26 1 2.4079 -1.6331 1.8520 27 1 1.2588 -0.3300 2.2379 28 1 2.9726 -0.5376 4.0108 29 1 2.5282 -2.2456 4.2476 30 1 0.6941 0.1630 4.6474 31 1 -0.9454 -1.5055 5.4322 32 1 0.2070 -2.8191 5.0896 33 1 -0.9498 -0.8756 3.0390 34 1 -1.4227 -2.5794 3.2416 35 1 0.2590 -3.9762 -1.2249 36 1 1.6611 -3.0600 -1.9969 37 1 3.1524 -3.6970 -0.0458 38 1 1.7510 -4.6135 0.7270 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088420366.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:20 Heat of formation + Delta-G solvation = -137.120691 kcal Electronic energy + Delta-G solvation = -23425.154007 eV Core-core repulsion = 19659.732926 eV Total energy + Delta-G solvation = -3765.421081 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.135 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -51.09081 -48.57967 -48.54537 -40.26627 -37.96316 -34.49449 -34.05364 -31.66478 -28.71463 -27.77889 -25.69313 -23.92923 -23.03536 -22.78812 -20.99559 -20.55470 -19.24831 -19.20268 -18.53527 -18.06033 -16.74238 -16.31385 -15.73325 -15.68787 -15.52484 -15.41071 -15.00969 -14.84040 -14.74393 -14.72374 -14.68794 -14.41311 -14.10329 -13.60285 -13.27948 -13.02176 -12.87075 -12.68695 -12.50676 -12.27652 -12.03759 -11.96701 -11.77940 -11.40105 -11.30223 -11.10245 -10.73394 -10.47325 -10.09427 -8.81793 -7.86537 -6.05761 1.40069 1.44683 1.48505 1.79334 2.40686 2.81921 3.00227 3.06005 3.10202 3.34647 3.78994 3.85551 3.90251 4.20310 4.30269 4.44718 4.57363 4.69639 4.69811 4.75766 4.82787 4.86818 4.93421 5.01747 5.04784 5.13506 5.19733 5.24925 5.39043 5.52785 5.62458 5.63799 5.77423 6.16429 6.48530 6.56615 6.68551 6.86665 7.46898 8.93088 Molecular weight = 277.13amu Principal moments of inertia in cm(-1) A = 0.019266 B = 0.006863 C = 0.005910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.995851 B = 4078.883769 C = 4736.481735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.043 3.957 3 Si 0.925 3.075 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.265 1.265 7 C -0.487 4.487 8 H 0.053 0.947 9 C 0.025 3.975 10 C 0.082 3.918 11 N -0.528 5.528 12 C 0.069 3.931 13 C -0.116 4.116 14 C -0.129 4.129 15 C 0.461 3.539 16 F -0.183 7.183 17 F -0.190 7.190 18 F -0.186 7.186 19 C -0.101 4.101 20 C 0.060 3.940 21 C -0.205 4.205 22 C -0.182 4.182 23 H 0.259 0.741 24 H 0.031 0.969 25 H 0.084 0.916 26 H 0.102 0.898 27 H 0.020 0.980 28 H 0.072 0.928 29 H 0.078 0.922 30 H 0.107 0.893 31 H 0.091 0.909 32 H 0.083 0.917 33 H 0.016 0.984 34 H 0.078 0.922 35 H 0.073 0.927 36 H 0.068 0.932 37 H 0.073 0.927 38 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.115 -1.606 10.513 10.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.157 4.157 3 Si 0.752 3.248 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.189 1.189 7 C -0.524 4.524 8 H 0.071 0.929 9 C 0.025 3.975 10 C -0.045 4.045 11 N -0.252 5.252 12 C -0.059 4.059 13 C -0.154 4.154 14 C -0.148 4.148 15 C 0.407 3.593 16 F -0.165 7.165 17 F -0.171 7.171 18 F -0.167 7.167 19 C -0.138 4.138 20 C -0.068 4.068 21 C -0.244 4.244 22 C -0.220 4.220 23 H 0.069 0.931 24 H 0.049 0.951 25 H 0.102 0.898 26 H 0.120 0.880 27 H 0.038 0.962 28 H 0.090 0.910 29 H 0.097 0.903 30 H 0.125 0.875 31 H 0.109 0.891 32 H 0.101 0.899 33 H 0.034 0.966 34 H 0.096 0.904 35 H 0.092 0.908 36 H 0.086 0.914 37 H 0.092 0.908 38 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 0.139 -1.908 10.785 10.953 hybrid contribution 0.174 1.724 -0.501 1.804 sum 0.313 -0.184 10.284 10.291 Atomic orbital electron populations 1.69779 1.06519 1.26643 1.50556 1.25292 0.95260 1.00651 0.94500 0.86119 0.78985 0.80656 0.79079 1.20368 1.21410 1.18934 1.20559 0.92806 0.90149 1.48904 0.92918 1.19155 0.95236 0.88977 0.94158 1.21856 0.96924 0.99637 0.86132 1.62107 1.08078 1.46245 1.08767 1.22516 0.95522 0.94001 0.93858 1.21830 0.96090 1.02265 0.95256 1.22547 0.99627 1.04331 0.88328 1.20626 0.75300 0.73108 0.90303 1.93153 1.89913 1.39542 1.93861 1.93156 1.58716 1.68378 1.96870 1.93153 1.59212 1.91260 1.73081 1.21582 0.96200 0.99053 0.96993 1.21959 0.94126 0.98465 0.92257 1.22941 1.00675 1.07084 0.93691 1.22779 0.96483 1.00796 1.01915 0.93117 0.95108 0.89816 0.88024 0.96183 0.90986 0.90338 0.87511 0.89053 0.89862 0.96563 0.90372 0.90816 0.91374 0.90825 0.89890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -45.85 10.35 21.45 0.22 -45.63 16 2 C 0.04 2.11 3.19 84.65 0.27 2.38 16 3 Si 0.93 40.08 29.29 68.60 2.01 42.09 16 4 H -0.28 -12.08 7.11 99.48 0.71 -11.38 16 5 H -0.29 -12.53 7.11 99.48 0.71 -11.83 16 6 H -0.26 -11.08 7.11 99.48 0.71 -10.38 16 7 C -0.49 -24.03 5.75 25.60 0.15 -23.88 16 8 H 0.05 2.64 7.82 -2.91 -0.02 2.62 16 9 C 0.03 1.16 1.27 -52.93 -0.07 1.09 16 10 C 0.08 3.62 5.03 86.30 0.43 4.06 16 11 N -0.53 -20.67 4.84 -896.35 -4.34 -25.01 16 12 C 0.07 2.76 3.86 86.33 0.33 3.10 16 13 C -0.12 -3.78 5.13 30.65 0.16 -3.63 16 14 C -0.13 -3.66 2.23 -10.71 -0.02 -3.68 16 15 C 0.46 12.28 2.69 71.98 0.19 12.47 16 16 F -0.18 -4.99 16.20 44.97 0.73 -4.26 16 17 F -0.19 -5.30 16.86 44.97 0.76 -4.54 16 18 F -0.19 -4.78 16.85 44.97 0.76 -4.02 16 19 C -0.10 -2.74 5.13 30.65 0.16 -2.58 16 20 C 0.06 2.03 5.37 86.32 0.46 2.49 16 21 C -0.21 -8.86 9.91 30.62 0.30 -8.56 16 22 C -0.18 -7.47 9.94 30.62 0.30 -7.17 16 23 H 0.26 12.96 8.32 -92.71 -0.77 12.19 16 24 H 0.03 1.31 8.07 -2.39 -0.02 1.29 16 25 H 0.08 4.17 5.03 -2.39 -0.01 4.16 16 26 H 0.10 4.55 4.78 -2.39 -0.01 4.54 16 27 H 0.02 0.90 5.79 -2.39 -0.01 0.89 16 28 H 0.07 2.25 7.89 -2.39 -0.02 2.23 16 29 H 0.08 2.48 7.73 -2.39 -0.02 2.46 16 30 H 0.11 3.05 8.14 -2.39 -0.02 3.03 16 31 H 0.09 2.09 7.88 -2.39 -0.02 2.07 16 32 H 0.08 2.23 7.74 -2.39 -0.02 2.21 16 33 H 0.02 0.60 8.14 -2.38 -0.02 0.58 16 34 H 0.08 2.43 8.12 -2.38 -0.02 2.41 16 35 H 0.07 2.99 8.14 -2.39 -0.02 2.97 16 36 H 0.07 3.00 8.14 -2.39 -0.02 2.98 16 37 H 0.07 2.95 8.14 -2.39 -0.02 2.94 16 38 H 0.08 3.18 8.14 -2.38 -0.02 3.16 16 Total: -1.00 -50.00 303.27 3.87 -46.13 By element: Atomic # 1 Polarization: 18.10 SS G_CDS: 1.06 Total: 19.16 kcal Atomic # 6 Polarization: -26.59 SS G_CDS: 2.67 Total: -23.91 kcal Atomic # 7 Polarization: -66.52 SS G_CDS: -4.12 Total: -70.64 kcal Atomic # 9 Polarization: -15.07 SS G_CDS: 2.24 Total: -12.82 kcal Atomic # 14 Polarization: 40.08 SS G_CDS: 2.01 Total: 42.09 kcal Total: -50.00 3.87 -46.13 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088420366.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.995 kcal (2) G-P(sol) polarization free energy of solvation -49.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds