Wall clock time and date at job start Mon Mar 30 2020 01:26:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47487 * 2 1 4 4 N 1.46498 * 109.47579 * 180.02562 * 3 2 1 5 5 C 1.36937 * 119.99764 * 275.53412 * 4 3 2 6 6 H 1.07996 * 120.00243 * 33.67313 * 5 4 3 7 7 C 1.38811 * 119.99695 * 213.66697 * 5 4 3 8 8 N 1.31612 * 120.00323 * 23.32698 * 7 5 4 9 9 Si 1.86802 * 119.99988 * 203.32876 * 7 5 4 10 10 H 1.48502 * 109.46966 * 60.00044 * 9 7 5 11 11 H 1.48502 * 109.47513 * 180.02562 * 9 7 5 12 12 H 1.48506 * 109.47175 * 300.00309 * 9 7 5 13 13 C 1.46498 * 119.99925 * 95.52804 * 4 3 2 14 14 C 1.50696 * 109.47385 * 270.00097 * 13 4 3 15 15 C 1.34010 * 124.91779 * 90.57258 * 14 13 4 16 16 C 1.46786 * 106.18352 * 180.02562 * 15 14 13 17 17 C 1.39437 * 134.31300 * 179.34662 * 16 15 14 18 18 C 1.37916 * 119.58424 * 180.02562 * 17 16 15 19 19 F 1.35098 * 119.89251 * 179.97438 * 18 17 16 20 20 C 1.38958 * 120.21763 * 0.02562 * 18 17 16 21 21 C 1.37807 * 120.66750 * 359.97438 * 20 18 17 22 22 C 1.38911 * 119.99417 * 0.25802 * 21 20 18 23 23 O 1.34429 * 124.92892 * 269.97684 * 14 13 4 24 24 H 1.09003 * 109.47327 * 299.99795 * 1 2 3 25 25 H 1.09004 * 109.47250 * 59.99877 * 1 2 3 26 26 H 1.09004 * 109.47394 * 179.97438 * 1 2 3 27 27 H 1.09010 * 109.47110 * 239.99885 * 2 1 3 28 28 H 1.09004 * 109.47250 * 120.00123 * 2 1 3 29 29 H 1.09003 * 109.46670 * 59.99803 * 3 2 1 30 30 H 1.09004 * 109.46976 * 300.00291 * 3 2 1 31 31 H 0.97002 * 120.00298 * 179.97438 * 8 7 5 32 32 H 1.09001 * 109.46717 * 150.00147 * 13 4 3 33 33 H 1.09001 * 109.47023 * 30.00589 * 13 4 3 34 34 H 1.07998 * 126.90805 * 359.40827 * 15 14 13 35 35 H 1.08003 * 120.21086 * 0.02867 * 17 16 15 36 36 H 1.07999 * 119.66749 * 179.97438 * 20 18 17 37 37 H 1.08005 * 120.00363 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1902 1.3279 1.1795 6 1 3.7864 0.7290 1.9824 7 6 5.4037 1.9815 1.3437 8 7 5.6860 3.0388 0.6124 9 14 6.6362 1.3605 2.6025 10 1 7.0221 -0.0346 2.2710 11 1 7.8427 2.2262 2.5831 12 1 6.0235 1.3965 3.9548 13 6 4.2370 1.5649 -1.2637 14 6 4.4879 0.1927 -1.8340 15 6 3.6690 -0.4482 -2.6792 16 6 4.3063 -1.7388 -2.9666 17 6 3.9633 -2.8422 -3.7471 18 6 4.8114 -3.9285 -3.8006 19 9 4.4849 -5.0011 -4.5543 20 6 6.0001 -3.9238 -3.0809 21 6 6.3487 -2.8385 -2.3065 22 6 5.5057 -1.7367 -2.2356 23 8 5.5710 -0.5611 -1.5775 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5139 -0.8901 28 1 1.8933 -0.5139 0.8900 29 1 1.6767 1.9562 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 6.5339 3.4957 0.7274 32 1 5.1895 2.0637 -1.0848 33 1 3.6476 2.1497 -1.9700 34 1 2.7247 -0.0915 -3.0631 35 1 3.0393 -2.8463 -4.3062 36 1 6.6574 -4.7794 -3.1289 37 1 7.2750 -2.8465 -1.7512 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092398026.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:33 Heat of formation + Delta-G solvation = -6.224769 kcal Electronic energy + Delta-G solvation = -21413.619454 eV Core-core repulsion = 18072.270881 eV Total energy + Delta-G solvation = -3341.348573 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.122 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -48.74897 -41.90752 -37.37480 -36.31936 -33.09344 -32.52536 -31.04589 -29.73495 -29.33604 -26.11185 -25.64378 -22.92764 -22.25257 -21.46175 -20.63980 -20.18950 -17.43827 -17.21745 -16.92932 -15.95119 -15.68973 -15.20683 -15.07455 -14.38818 -14.36037 -14.01212 -13.91585 -13.29543 -13.19086 -12.91808 -12.67100 -12.40677 -12.21281 -11.65365 -11.57290 -11.39929 -11.08272 -10.83340 -10.79714 -10.74877 -10.53612 -10.17454 -10.14339 -10.01903 -9.63165 -8.64449 -8.15721 -7.74020 -6.86860 -5.98797 -3.51803 1.08343 1.41758 2.87878 3.26581 3.32508 3.37638 3.42293 3.77789 4.31833 4.38340 4.73424 4.92560 5.14558 5.20369 5.34762 5.45803 5.54021 5.61722 5.66356 5.79481 5.99108 6.00131 6.05358 6.16296 6.21456 6.29904 6.33898 6.39279 6.50089 6.53618 6.58263 6.85675 6.87579 6.91182 7.09462 7.29642 7.68063 7.78632 8.30227 8.95893 9.60287 10.12821 11.02671 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.015821 B = 0.006183 C = 0.004961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1769.324283 B = 4527.334402 C = 5642.620849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.149 4.149 3 C 0.146 3.854 4 N -0.567 5.567 5 C -0.264 4.264 6 H 0.065 0.935 7 C 0.017 3.983 8 N -0.882 5.882 9 Si 0.899 3.101 10 H -0.280 1.280 11 H -0.288 1.288 12 H -0.280 1.280 13 C 0.190 3.810 14 C 0.089 3.911 15 C -0.257 4.257 16 C -0.090 4.090 17 C -0.119 4.119 18 C 0.073 3.927 19 F -0.145 7.145 20 C -0.146 4.146 21 C -0.074 4.074 22 C 0.031 3.969 23 O -0.177 6.177 24 H 0.049 0.951 25 H 0.047 0.953 26 H 0.043 0.957 27 H 0.058 0.942 28 H 0.056 0.944 29 H 0.051 0.949 30 H 0.039 0.961 31 H 0.260 0.740 32 H 0.121 0.879 33 H 0.070 0.930 34 H 0.150 0.850 35 H 0.133 0.867 36 H 0.140 0.860 37 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.954 -7.958 -7.036 11.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.189 4.189 3 C 0.021 3.979 4 N -0.285 5.285 5 C -0.393 4.393 6 H 0.083 0.917 7 C -0.184 4.184 8 N -0.524 5.524 9 Si 0.728 3.272 10 H -0.206 1.206 11 H -0.214 1.214 12 H -0.206 1.206 13 C 0.062 3.938 14 C 0.037 3.963 15 C -0.277 4.277 16 C -0.091 4.091 17 C -0.138 4.138 18 C 0.054 3.946 19 F -0.124 7.124 20 C -0.165 4.165 21 C -0.092 4.092 22 C -0.018 4.018 23 O -0.076 6.076 24 H 0.068 0.932 25 H 0.066 0.934 26 H 0.062 0.938 27 H 0.077 0.923 28 H 0.075 0.925 29 H 0.069 0.931 30 H 0.057 0.943 31 H 0.070 0.930 32 H 0.138 0.862 33 H 0.088 0.912 34 H 0.168 0.832 35 H 0.151 0.849 36 H 0.157 0.843 37 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -2.609 -7.741 -6.828 10.647 hybrid contribution 0.433 -0.825 0.376 1.005 sum -2.176 -8.566 -6.452 10.942 Atomic orbital electron populations 1.21713 0.97186 1.00467 1.01027 1.22177 0.93942 1.00744 1.02034 1.21008 0.84183 0.93357 0.99393 1.43803 0.99806 1.83205 1.01659 1.19015 1.03234 1.24434 0.92652 0.91702 1.25078 1.00297 0.94620 0.98422 1.69916 1.23782 1.16433 1.42230 0.86419 0.80804 0.78854 0.81137 1.20599 1.21366 1.20554 1.20078 1.02221 0.84809 0.86707 1.25166 0.83045 0.96437 0.91701 1.22036 1.03488 0.94115 1.08069 1.19760 0.95420 0.95321 0.98601 1.20291 1.00297 0.91856 1.01364 1.17308 0.95988 0.85015 0.96284 1.91458 1.92812 1.53786 1.74326 1.20667 0.96790 0.99430 0.99618 1.19697 0.99425 0.89740 1.00347 1.19789 0.96844 0.88564 0.96554 1.84224 1.41350 1.23488 1.58564 0.93206 0.93381 0.93793 0.92292 0.92532 0.93083 0.94271 0.93019 0.86237 0.91175 0.83225 0.84914 0.84262 0.84510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 9.91 37.16 0.37 -1.71 16 2 C -0.15 -2.64 6.23 -26.73 -0.17 -2.81 16 3 C 0.15 2.87 5.72 -4.04 -0.02 2.85 16 4 N -0.57 -13.20 2.45 -174.61 -0.43 -13.63 16 5 C -0.26 -6.89 9.48 -15.06 -0.14 -7.03 16 6 H 0.07 1.71 7.93 -52.49 -0.42 1.29 16 7 C 0.02 0.44 4.95 -17.43 -0.09 0.35 16 8 N -0.88 -23.91 11.32 55.49 0.63 -23.28 16 9 Si 0.90 21.11 29.61 -169.99 -5.03 16.07 16 10 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 12 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 13 C 0.19 4.17 5.83 -5.20 -0.03 4.14 16 14 C 0.09 1.84 6.77 -35.80 -0.24 1.60 16 15 C -0.26 -4.65 9.40 -37.62 -0.35 -5.01 16 16 C -0.09 -1.60 6.39 -105.16 -0.67 -2.27 16 17 C -0.12 -1.84 10.07 -39.25 -0.40 -2.23 16 18 C 0.07 1.08 7.29 -39.43 -0.29 0.79 16 19 F -0.15 -2.07 17.26 2.25 0.04 -2.03 16 20 C -0.15 -2.00 9.99 -39.47 -0.39 -2.40 16 21 C -0.07 -1.13 10.06 -39.49 -0.40 -1.53 16 22 C 0.03 0.58 7.41 -38.49 -0.29 0.29 16 23 O -0.18 -3.85 10.58 3.75 0.04 -3.81 16 24 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 25 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 27 H 0.06 1.08 6.40 -51.92 -0.33 0.74 16 28 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 29 H 0.05 1.03 8.09 -51.93 -0.42 0.61 16 30 H 0.04 0.70 7.83 -51.93 -0.41 0.29 16 31 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 32 H 0.12 2.99 5.31 -51.93 -0.28 2.71 16 33 H 0.07 1.37 7.86 -51.93 -0.41 0.96 16 34 H 0.15 2.38 8.06 -52.49 -0.42 1.95 16 35 H 0.13 1.77 8.06 -52.48 -0.42 1.34 16 36 H 0.14 1.49 8.06 -52.49 -0.42 1.06 16 37 H 0.14 1.81 8.06 -52.48 -0.42 1.39 16 LS Contribution 318.57 15.07 4.80 4.80 Total: -1.00 -27.54 318.57 -7.84 -35.38 By element: Atomic # 1 Polarization: 6.23 SS G_CDS: -4.78 Total: 1.46 kcal Atomic # 6 Polarization: -11.85 SS G_CDS: -3.11 Total: -14.96 kcal Atomic # 7 Polarization: -37.11 SS G_CDS: 0.20 Total: -36.91 kcal Atomic # 8 Polarization: -3.85 SS G_CDS: 0.04 Total: -3.81 kcal Atomic # 9 Polarization: -2.07 SS G_CDS: 0.04 Total: -2.03 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.03 Total: 16.07 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -27.54 -7.84 -35.38 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092398026.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.157 kcal (2) G-P(sol) polarization free energy of solvation -27.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds