Wall clock time and date at job start Mon Mar 30 2020 01:26:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47487 * 2 1 4 4 N 1.46498 * 109.47579 * 180.02562 * 3 2 1 5 5 C 1.36937 * 119.99764 * 275.53412 * 4 3 2 6 6 H 1.07996 * 120.00243 * 33.67313 * 5 4 3 7 7 C 1.38811 * 119.99695 * 213.66697 * 5 4 3 8 8 N 1.31612 * 120.00323 * 23.32698 * 7 5 4 9 9 Si 1.86802 * 119.99988 * 203.32876 * 7 5 4 10 10 H 1.48502 * 109.46966 * 60.00044 * 9 7 5 11 11 H 1.48502 * 109.47513 * 180.02562 * 9 7 5 12 12 H 1.48506 * 109.47175 * 300.00309 * 9 7 5 13 13 C 1.46498 * 119.99925 * 95.52804 * 4 3 2 14 14 C 1.50696 * 109.47385 * 270.00097 * 13 4 3 15 15 C 1.34010 * 124.91779 * 90.57258 * 14 13 4 16 16 C 1.46786 * 106.18352 * 180.02562 * 15 14 13 17 17 C 1.39437 * 134.31300 * 179.34662 * 16 15 14 18 18 C 1.37916 * 119.58424 * 180.02562 * 17 16 15 19 19 F 1.35098 * 119.89251 * 179.97438 * 18 17 16 20 20 C 1.38958 * 120.21763 * 0.02562 * 18 17 16 21 21 C 1.37807 * 120.66750 * 359.97438 * 20 18 17 22 22 C 1.38911 * 119.99417 * 0.25802 * 21 20 18 23 23 O 1.34429 * 124.92892 * 269.97684 * 14 13 4 24 24 H 1.09003 * 109.47327 * 299.99795 * 1 2 3 25 25 H 1.09004 * 109.47250 * 59.99877 * 1 2 3 26 26 H 1.09004 * 109.47394 * 179.97438 * 1 2 3 27 27 H 1.09010 * 109.47110 * 239.99885 * 2 1 3 28 28 H 1.09004 * 109.47250 * 120.00123 * 2 1 3 29 29 H 1.09003 * 109.46670 * 59.99803 * 3 2 1 30 30 H 1.09004 * 109.46976 * 300.00291 * 3 2 1 31 31 H 0.97002 * 120.00298 * 179.97438 * 8 7 5 32 32 H 1.09001 * 109.46717 * 150.00147 * 13 4 3 33 33 H 1.09001 * 109.47023 * 30.00589 * 13 4 3 34 34 H 1.07998 * 126.90805 * 359.40827 * 15 14 13 35 35 H 1.08003 * 120.21086 * 0.02867 * 17 16 15 36 36 H 1.07999 * 119.66749 * 179.97438 * 20 18 17 37 37 H 1.08005 * 120.00363 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1902 1.3279 1.1795 6 1 3.7864 0.7290 1.9824 7 6 5.4037 1.9815 1.3437 8 7 5.6860 3.0388 0.6124 9 14 6.6362 1.3605 2.6025 10 1 7.0221 -0.0346 2.2710 11 1 7.8427 2.2262 2.5831 12 1 6.0235 1.3965 3.9548 13 6 4.2370 1.5649 -1.2637 14 6 4.4879 0.1927 -1.8340 15 6 3.6690 -0.4482 -2.6792 16 6 4.3063 -1.7388 -2.9666 17 6 3.9633 -2.8422 -3.7471 18 6 4.8114 -3.9285 -3.8006 19 9 4.4849 -5.0011 -4.5543 20 6 6.0001 -3.9238 -3.0809 21 6 6.3487 -2.8385 -2.3065 22 6 5.5057 -1.7367 -2.2356 23 8 5.5710 -0.5611 -1.5775 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5139 -0.8901 28 1 1.8933 -0.5139 0.8900 29 1 1.6767 1.9562 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 6.5339 3.4957 0.7274 32 1 5.1895 2.0637 -1.0848 33 1 3.6476 2.1497 -1.9700 34 1 2.7247 -0.0915 -3.0631 35 1 3.0393 -2.8463 -4.3062 36 1 6.6574 -4.7794 -3.1289 37 1 7.2750 -2.8465 -1.7512 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092398026.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:33 Heat of formation + Delta-G solvation = -18.754047 kcal Electronic energy + Delta-G solvation = -21414.162764 eV Core-core repulsion = 18072.270881 eV Total energy + Delta-G solvation = -3341.891883 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.122 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.89707 -43.33302 -38.69559 -37.95577 -34.69736 -33.96616 -32.71761 -31.05777 -30.75317 -27.58979 -27.37190 -24.35304 -23.65239 -22.81919 -22.07198 -21.78253 -18.92273 -18.70455 -18.36531 -17.31592 -17.10851 -16.79788 -16.46735 -15.92746 -15.81053 -15.61570 -15.23658 -14.86258 -14.45480 -14.33336 -13.97330 -13.77159 -13.54106 -13.34123 -13.05329 -12.82692 -12.72035 -12.53884 -12.35556 -12.23242 -12.06064 -11.93941 -11.77813 -11.47150 -11.00477 -10.57811 -9.44247 -9.11634 -8.73598 -7.93812 -5.50499 -0.16560 0.15050 1.38994 1.45316 1.47587 1.51743 1.89491 2.46354 2.52204 3.07508 3.19198 3.51739 3.68374 3.72212 3.99946 4.21725 4.25680 4.27368 4.34636 4.46885 4.58627 4.67853 4.78823 4.81954 4.84750 4.97143 5.02442 5.03027 5.16639 5.24332 5.26414 5.38392 5.42723 5.55653 5.63541 5.64161 5.74221 6.28549 6.42340 7.05154 7.74106 8.22834 9.03544 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.015821 B = 0.006183 C = 0.004961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1769.324283 B = 4527.334402 C = 5642.620849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.137 4.137 3 C 0.144 3.856 4 N -0.584 5.584 5 C -0.270 4.270 6 H 0.053 0.947 7 C -0.025 4.025 8 N -0.907 5.907 9 Si 0.947 3.053 10 H -0.287 1.287 11 H -0.287 1.287 12 H -0.273 1.273 13 C 0.196 3.804 14 C 0.055 3.945 15 C -0.230 4.230 16 C -0.109 4.109 17 C -0.115 4.115 18 C 0.074 3.926 19 F -0.138 7.138 20 C -0.125 4.125 21 C -0.082 4.082 22 C 0.003 3.997 23 O -0.211 6.211 24 H 0.053 0.947 25 H 0.065 0.935 26 H 0.056 0.944 27 H 0.054 0.946 28 H 0.029 0.971 29 H 0.039 0.961 30 H 0.059 0.941 31 H 0.256 0.744 32 H 0.086 0.914 33 H 0.089 0.911 34 H 0.173 0.827 35 H 0.156 0.844 36 H 0.177 0.823 37 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.824 -10.094 -8.359 13.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.177 4.177 3 C 0.019 3.981 4 N -0.303 5.303 5 C -0.400 4.400 6 H 0.071 0.929 7 C -0.224 4.224 8 N -0.550 5.550 9 Si 0.775 3.225 10 H -0.214 1.214 11 H -0.212 1.212 12 H -0.198 1.198 13 C 0.068 3.932 14 C 0.003 3.997 15 C -0.250 4.250 16 C -0.110 4.110 17 C -0.134 4.134 18 C 0.055 3.945 19 F -0.117 7.117 20 C -0.144 4.144 21 C -0.100 4.100 22 C -0.045 4.045 23 O -0.112 6.112 24 H 0.072 0.928 25 H 0.084 0.916 26 H 0.075 0.925 27 H 0.072 0.928 28 H 0.048 0.952 29 H 0.058 0.942 30 H 0.078 0.922 31 H 0.066 0.934 32 H 0.104 0.896 33 H 0.107 0.893 34 H 0.191 0.809 35 H 0.173 0.827 36 H 0.194 0.806 37 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -3.503 -9.891 -8.163 13.295 hybrid contribution 0.693 -0.334 0.649 1.006 sum -2.810 -10.225 -7.515 12.997 Atomic orbital electron populations 1.21647 0.94111 1.01707 1.02125 1.22009 0.96483 0.98763 1.00462 1.21126 0.82397 0.94767 0.99763 1.43963 1.01179 1.83784 1.01325 1.19105 1.03720 1.23599 0.93571 0.92930 1.25615 1.01574 0.94982 1.00201 1.70013 1.23847 1.17421 1.43703 0.85657 0.79213 0.77759 0.79831 1.21362 1.21239 1.19827 1.19810 1.00802 0.85852 0.86736 1.24704 0.84243 0.96445 0.94260 1.22263 1.03182 0.93747 1.05854 1.19887 0.95380 0.96000 0.99770 1.20518 1.01218 0.91084 1.00569 1.17420 0.96113 0.84914 0.96103 1.91485 1.92774 1.53346 1.74105 1.21071 0.96525 0.99528 0.97226 1.20051 0.99841 0.89205 1.00939 1.20353 0.98413 0.88499 0.97196 1.84119 1.42236 1.24975 1.59896 0.92776 0.91643 0.92474 0.92755 0.95170 0.94245 0.92217 0.93439 0.89600 0.89330 0.80946 0.82653 0.80566 0.82753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.61 9.91 71.98 0.71 -2.90 16 2 C -0.14 -4.78 6.23 30.59 0.19 -4.59 16 3 C 0.14 5.65 5.72 86.38 0.49 6.14 16 4 N -0.58 -27.82 2.45 -706.36 -1.73 -29.55 16 5 C -0.27 -14.55 9.48 84.03 0.80 -13.75 16 6 H 0.05 2.89 7.93 -2.91 -0.02 2.87 16 7 C -0.03 -1.39 4.95 84.86 0.42 -0.97 16 8 N -0.91 -50.95 11.32 21.65 0.24 -50.71 16 9 Si 0.95 44.57 29.61 68.60 2.03 46.60 16 10 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 11 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 12 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 13 C 0.20 8.83 5.83 85.63 0.50 9.33 16 14 C 0.05 2.30 6.77 24.72 0.17 2.46 16 15 C -0.23 -8.13 9.40 23.54 0.22 -7.90 16 16 C -0.11 -3.73 6.39 -20.21 -0.13 -3.85 16 17 C -0.12 -3.22 10.07 22.48 0.23 -2.99 16 18 C 0.07 1.91 7.29 22.37 0.16 2.08 16 19 F -0.14 -3.40 17.26 44.97 0.78 -2.62 16 20 C -0.13 -2.98 9.99 22.34 0.22 -2.76 16 21 C -0.08 -2.38 10.06 22.33 0.22 -2.15 16 22 C 0.00 0.11 7.41 22.97 0.17 0.28 16 23 O -0.21 -9.46 10.58 -9.50 -0.10 -9.56 16 24 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 25 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 26 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 27 H 0.05 1.92 6.40 -2.38 -0.02 1.91 16 28 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.04 1.60 8.09 -2.39 -0.02 1.58 16 30 H 0.06 2.06 7.83 -2.39 -0.02 2.04 16 31 H 0.26 13.96 8.31 -92.71 -0.77 13.19 16 32 H 0.09 4.52 5.31 -2.39 -0.01 4.50 16 33 H 0.09 3.51 7.86 -2.39 -0.02 3.49 16 34 H 0.17 5.08 8.06 -2.91 -0.02 5.06 16 35 H 0.16 3.56 8.06 -2.91 -0.02 3.54 16 36 H 0.18 2.89 8.06 -2.91 -0.02 2.86 16 37 H 0.15 3.82 8.06 -2.91 -0.02 3.79 16 Total: -1.00 -61.18 318.57 6.68 -54.50 By element: Atomic # 1 Polarization: 11.84 SS G_CDS: 1.07 Total: 12.91 kcal Atomic # 6 Polarization: -25.95 SS G_CDS: 4.38 Total: -21.57 kcal Atomic # 7 Polarization: -78.77 SS G_CDS: -1.48 Total: -80.26 kcal Atomic # 8 Polarization: -9.46 SS G_CDS: -0.10 Total: -9.56 kcal Atomic # 9 Polarization: -3.40 SS G_CDS: 0.78 Total: -2.62 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.60 kcal Total: -61.18 6.68 -54.50 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092398026.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.745 kcal (2) G-P(sol) polarization free energy of solvation -61.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds