Wall clock time and date at job start Mon Mar 30 2020 01:50:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50697 * 109.47466 * 239.99773 * 2 1 3 5 5 H 1.07999 * 120.00055 * 240.00165 * 4 2 1 6 6 C 1.37878 * 119.99687 * 60.00188 * 4 2 1 7 7 N 1.31511 * 120.00458 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99926 * 180.02562 * 6 4 2 9 9 H 1.48506 * 109.46872 * 59.99743 * 8 6 4 10 10 H 1.48503 * 109.47008 * 179.97438 * 8 6 4 11 11 H 1.48494 * 109.46914 * 299.99916 * 8 6 4 12 12 N 1.46902 * 109.47094 * 119.99508 * 2 1 3 13 13 C 1.46900 * 110.99736 * 58.95813 * 12 2 1 14 14 C 1.46895 * 111.00186 * 295.00225 * 12 2 1 15 15 C 1.50703 * 109.46874 * 189.99595 * 14 12 2 16 16 C 1.34000 * 124.92366 * 89.72707 * 15 14 12 17 17 C 1.46786 * 106.19020 * 179.91838 * 16 15 14 18 18 C 1.39436 * 134.31381 * 180.02562 * 17 16 15 19 19 C 1.37907 * 119.58410 * 180.29676 * 18 17 16 20 20 F 1.35096 * 119.89499 * 180.02562 * 19 18 17 21 21 C 1.38960 * 120.21915 * 0.02562 * 19 18 17 22 22 C 1.37811 * 120.66494 * 359.97438 * 21 19 18 23 23 C 1.38917 * 119.99348 * 0.04448 * 22 21 19 24 24 O 1.34435 * 124.92833 * 270.02077 * 15 14 12 25 25 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 27 27 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 28 28 H 0.96999 * 120.00480 * 179.97438 * 7 6 4 29 29 H 1.08997 * 109.47292 * 59.99623 * 13 12 2 30 30 H 1.09002 * 109.47267 * 179.97438 * 13 12 2 31 31 H 1.09000 * 109.47210 * 300.00139 * 13 12 2 32 32 H 1.08999 * 109.47066 * 309.99575 * 14 12 2 33 33 H 1.09001 * 109.47511 * 70.00176 * 14 12 2 34 34 H 1.08001 * 126.90184 * 0.02562 * 16 15 14 35 35 H 1.08000 * 120.21074 * 0.31908 * 18 17 16 36 36 H 1.08000 * 119.66812 * 179.97438 * 21 19 18 37 37 H 1.07999 * 119.99851 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 1.8259 -2.5203 -4.0076 10 1 1.8261 -0.4206 -5.2204 11 1 3.8064 -1.1209 -4.0080 12 7 2.0196 -0.6924 1.1995 13 6 1.5283 -2.0760 1.2460 14 6 1.6487 0.0393 2.4181 15 6 2.3678 -0.5571 3.6006 16 6 3.5741 -0.1719 4.0388 17 6 3.8761 -1.0161 5.2010 18 6 4.9520 -1.1108 6.0829 19 6 4.9214 -2.0457 7.0963 20 9 5.9601 -2.1425 7.9547 21 6 3.8256 -2.8885 7.2375 22 6 2.7571 -2.8032 6.3713 23 6 2.7689 -1.8684 5.3438 24 8 1.8947 -1.5563 4.3653 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 0.5139 0.8900 28 1 0.7089 1.1612 -3.4844 29 1 1.8762 -2.6150 0.3648 30 1 1.9060 -2.5657 2.1436 31 1 0.4385 -2.0742 1.2639 32 1 1.9297 1.0871 2.3124 33 1 0.5722 -0.0344 2.5727 34 1 4.1980 0.6049 3.6218 35 1 5.8037 -0.4560 5.9734 36 1 3.8111 -3.6177 8.0340 37 1 1.9108 -3.4634 6.4912 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000093090452.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:58 Heat of formation + Delta-G solvation = -7.417116 kcal Electronic energy + Delta-G solvation = -20820.596065 eV Core-core repulsion = 17479.195788 eV Total energy + Delta-G solvation = -3341.400277 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.122 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -48.99078 -42.42756 -37.88099 -37.13377 -33.28123 -32.58845 -30.43837 -30.03434 -28.45752 -26.75854 -25.23656 -24.18497 -22.79151 -22.03029 -20.95740 -19.38632 -17.79122 -17.49133 -16.50405 -16.35195 -16.01521 -15.61111 -15.13989 -14.79655 -14.43213 -14.23885 -13.91037 -13.51193 -13.30370 -13.02459 -12.68372 -12.57807 -12.19848 -11.91691 -11.66095 -11.24252 -11.15042 -11.01343 -10.84593 -10.72957 -10.58689 -10.21490 -10.09254 -9.94651 -8.99438 -8.51826 -8.44822 -8.19874 -7.33777 -6.07263 -4.11466 0.71959 1.06796 2.40299 2.72109 3.29923 3.34281 3.37457 3.43699 4.00245 4.35012 4.39002 4.56962 4.84573 5.00183 5.07315 5.19220 5.21080 5.25596 5.56601 5.71952 5.78266 5.88947 5.91199 5.93777 6.09858 6.14804 6.31625 6.44729 6.57555 6.59320 6.73452 6.82816 6.99101 7.21274 7.33752 7.62002 7.73432 7.97351 8.25457 8.45500 8.93438 9.53825 10.99832 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.034522 B = 0.003502 C = 0.003405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.883356 B = 7992.446461 C = 8221.346811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.212 3.788 3 H 0.043 0.957 4 C -0.503 4.503 5 H 0.063 0.937 6 C 0.060 3.940 7 N -0.894 5.894 8 Si 0.898 3.102 9 H -0.278 1.278 10 H -0.288 1.288 11 H -0.276 1.276 12 N -0.529 5.529 13 C 0.032 3.968 14 C 0.119 3.881 15 C 0.076 3.924 16 C -0.204 4.204 17 C -0.096 4.096 18 C -0.110 4.110 19 C 0.078 3.922 20 F -0.141 7.141 21 C -0.136 4.136 22 C -0.074 4.074 23 C 0.039 3.961 24 O -0.189 6.189 25 H 0.032 0.968 26 H 0.091 0.909 27 H 0.008 0.992 28 H 0.262 0.738 29 H 0.076 0.924 30 H 0.042 0.958 31 H 0.023 0.977 32 H 0.104 0.896 33 H 0.050 0.950 34 H 0.162 0.838 35 H 0.139 0.861 36 H 0.144 0.856 37 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.082 -3.907 16.868 17.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.106 3.894 3 H 0.061 0.939 4 C -0.541 4.541 5 H 0.081 0.919 6 C -0.141 4.141 7 N -0.533 5.533 8 Si 0.726 3.274 9 H -0.203 1.203 10 H -0.213 1.213 11 H -0.202 1.202 12 N -0.253 5.253 13 C -0.116 4.116 14 C -0.009 4.009 15 C 0.028 3.972 16 C -0.224 4.224 17 C -0.097 4.097 18 C -0.129 4.129 19 C 0.058 3.942 20 F -0.119 7.119 21 C -0.155 4.155 22 C -0.093 4.093 23 C -0.009 4.009 24 O -0.091 6.091 25 H 0.051 0.949 26 H 0.109 0.891 27 H 0.027 0.973 28 H 0.072 0.928 29 H 0.095 0.905 30 H 0.061 0.939 31 H 0.041 0.959 32 H 0.122 0.878 33 H 0.068 0.932 34 H 0.179 0.821 35 H 0.157 0.843 36 H 0.162 0.838 37 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 3.292 -3.934 16.668 17.440 hybrid contribution -0.267 -0.372 -0.670 0.812 sum 3.025 -4.306 15.998 16.841 Atomic orbital electron populations 1.22444 1.00612 0.99637 1.00759 1.19363 0.89926 0.94678 0.85400 0.93900 1.21041 1.30906 1.12664 0.89489 0.91873 1.24911 0.95121 0.95097 0.99011 1.69860 1.36822 1.22981 1.23672 0.86558 0.79273 0.79606 0.81970 1.20332 1.21350 1.20166 1.62483 1.59519 1.02289 1.01008 1.22286 0.97446 0.90653 1.01241 1.20771 0.96719 0.97706 0.85669 1.22740 0.94346 0.87435 0.92728 1.22173 0.97440 1.05084 0.97715 1.19732 0.94790 0.97970 0.97241 1.20385 0.99053 0.99285 0.94148 1.17336 0.86266 0.99235 0.91321 1.91488 1.56309 1.95649 1.68491 1.20775 0.92662 1.00838 1.01222 1.19695 0.99581 0.97603 0.92413 1.19627 0.89828 0.98996 0.92457 1.84043 1.42800 1.46554 1.35668 0.94862 0.89067 0.97270 0.92840 0.90483 0.93900 0.95891 0.87764 0.93191 0.82060 0.84320 0.83822 0.84202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.02 8.28 37.16 0.31 -3.72 16 2 C 0.21 5.05 2.34 -68.87 -0.16 4.89 16 3 H 0.04 1.11 8.03 -51.93 -0.42 0.69 16 4 C -0.50 -13.27 7.94 -34.44 -0.27 -13.55 16 5 H 0.06 1.68 6.75 -52.49 -0.35 1.33 16 6 C 0.06 1.60 5.30 -17.82 -0.09 1.51 16 7 N -0.89 -24.65 11.32 55.43 0.63 -24.02 16 8 Si 0.90 20.87 29.54 -169.99 -5.02 15.85 16 9 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 10 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 12 N -0.53 -10.88 4.73 -237.74 -1.13 -12.00 16 13 C 0.03 0.63 8.72 60.06 0.52 1.15 16 14 C 0.12 2.05 4.91 -4.98 -0.02 2.02 16 15 C 0.08 1.21 5.82 -35.80 -0.21 1.00 16 16 C -0.20 -3.03 11.01 -37.62 -0.41 -3.45 16 17 C -0.10 -1.37 6.39 -105.16 -0.67 -2.04 16 18 C -0.11 -1.36 10.07 -39.26 -0.40 -1.76 16 19 C 0.08 0.91 7.29 -39.44 -0.29 0.62 16 20 F -0.14 -1.65 17.26 2.25 0.04 -1.61 16 21 C -0.14 -1.40 9.99 -39.47 -0.39 -1.79 16 22 C -0.07 -0.83 10.06 -39.49 -0.40 -1.23 16 23 C 0.04 0.55 7.41 -38.50 -0.29 0.27 16 24 O -0.19 -3.02 9.82 3.76 0.04 -2.98 16 25 H 0.03 0.75 6.38 -51.93 -0.33 0.42 16 26 H 0.09 2.33 6.07 -51.93 -0.32 2.01 16 27 H 0.01 0.17 6.75 -51.93 -0.35 -0.18 16 28 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 29 H 0.08 1.60 6.53 -51.93 -0.34 1.27 16 30 H 0.04 0.78 6.58 -51.93 -0.34 0.44 16 31 H 0.02 0.44 6.28 -51.93 -0.33 0.12 16 32 H 0.10 1.66 8.00 -51.93 -0.42 1.24 16 33 H 0.05 0.85 6.94 -51.93 -0.36 0.49 16 34 H 0.16 2.13 8.06 -52.49 -0.42 1.71 16 35 H 0.14 1.46 8.06 -52.49 -0.42 1.04 16 36 H 0.14 1.06 8.06 -52.49 -0.42 0.64 16 37 H 0.14 1.22 8.06 -52.49 -0.42 0.79 16 LS Contribution 308.38 15.07 4.65 4.65 Total: -1.00 -27.89 308.38 -7.95 -35.84 By element: Atomic # 1 Polarization: 4.72 SS G_CDS: -4.38 Total: 0.34 kcal Atomic # 6 Polarization: -13.29 SS G_CDS: -2.78 Total: -16.06 kcal Atomic # 7 Polarization: -35.53 SS G_CDS: -0.50 Total: -36.03 kcal Atomic # 8 Polarization: -3.02 SS G_CDS: 0.04 Total: -2.98 kcal Atomic # 9 Polarization: -1.65 SS G_CDS: 0.04 Total: -1.61 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -27.89 -7.95 -35.84 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093090452.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.424 kcal (2) G-P(sol) polarization free energy of solvation -27.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds