Wall clock time and date at job start Mon Mar 30 2020 01:50:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50697 * 109.47466 * 239.99773 * 2 1 3 5 5 H 1.07999 * 120.00055 * 240.00165 * 4 2 1 6 6 C 1.37878 * 119.99687 * 60.00188 * 4 2 1 7 7 N 1.31511 * 120.00458 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99926 * 180.02562 * 6 4 2 9 9 H 1.48506 * 109.46872 * 59.99743 * 8 6 4 10 10 H 1.48503 * 109.47008 * 179.97438 * 8 6 4 11 11 H 1.48494 * 109.46914 * 299.99916 * 8 6 4 12 12 N 1.46902 * 109.47094 * 119.99508 * 2 1 3 13 13 C 1.46900 * 110.99736 * 58.95813 * 12 2 1 14 14 C 1.46895 * 111.00186 * 295.00225 * 12 2 1 15 15 C 1.50703 * 109.46874 * 189.99595 * 14 12 2 16 16 C 1.34000 * 124.92366 * 89.72707 * 15 14 12 17 17 C 1.46786 * 106.19020 * 179.91838 * 16 15 14 18 18 C 1.39436 * 134.31381 * 180.02562 * 17 16 15 19 19 C 1.37907 * 119.58410 * 180.29676 * 18 17 16 20 20 F 1.35096 * 119.89499 * 180.02562 * 19 18 17 21 21 C 1.38960 * 120.21915 * 0.02562 * 19 18 17 22 22 C 1.37811 * 120.66494 * 359.97438 * 21 19 18 23 23 C 1.38917 * 119.99348 * 0.04448 * 22 21 19 24 24 O 1.34435 * 124.92833 * 270.02077 * 15 14 12 25 25 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 27 27 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 28 28 H 0.96999 * 120.00480 * 179.97438 * 7 6 4 29 29 H 1.08997 * 109.47292 * 59.99623 * 13 12 2 30 30 H 1.09002 * 109.47267 * 179.97438 * 13 12 2 31 31 H 1.09000 * 109.47210 * 300.00139 * 13 12 2 32 32 H 1.08999 * 109.47066 * 309.99575 * 14 12 2 33 33 H 1.09001 * 109.47511 * 70.00176 * 14 12 2 34 34 H 1.08001 * 126.90184 * 0.02562 * 16 15 14 35 35 H 1.08000 * 120.21074 * 0.31908 * 18 17 16 36 36 H 1.08000 * 119.66812 * 179.97438 * 21 19 18 37 37 H 1.07999 * 119.99851 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 1.8259 -2.5203 -4.0076 10 1 1.8261 -0.4206 -5.2204 11 1 3.8064 -1.1209 -4.0080 12 7 2.0196 -0.6924 1.1995 13 6 1.5283 -2.0760 1.2460 14 6 1.6487 0.0393 2.4181 15 6 2.3678 -0.5571 3.6006 16 6 3.5741 -0.1719 4.0388 17 6 3.8761 -1.0161 5.2010 18 6 4.9520 -1.1108 6.0829 19 6 4.9214 -2.0457 7.0963 20 9 5.9601 -2.1425 7.9547 21 6 3.8256 -2.8885 7.2375 22 6 2.7571 -2.8032 6.3713 23 6 2.7689 -1.8684 5.3438 24 8 1.8947 -1.5563 4.3653 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 0.5139 0.8900 28 1 0.7089 1.1612 -3.4844 29 1 1.8762 -2.6150 0.3648 30 1 1.9060 -2.5657 2.1436 31 1 0.4385 -2.0742 1.2639 32 1 1.9297 1.0871 2.3124 33 1 0.5722 -0.0344 2.5727 34 1 4.1980 0.6049 3.6218 35 1 5.8037 -0.4560 5.9734 36 1 3.8111 -3.6177 8.0340 37 1 1.9108 -3.4634 6.4912 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000093090452.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:58 Heat of formation + Delta-G solvation = -22.460529 kcal Electronic energy + Delta-G solvation = -20821.248396 eV Core-core repulsion = 17479.195788 eV Total energy + Delta-G solvation = -3342.052608 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.122 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.90581 -43.51008 -39.18906 -38.44680 -34.97068 -33.90696 -31.78895 -31.03727 -30.07718 -28.14016 -27.17812 -25.66862 -23.86546 -23.08326 -22.16982 -21.07755 -18.79750 -18.52597 -18.20719 -17.62264 -17.23714 -16.83327 -16.50618 -16.06539 -15.88684 -15.53554 -15.28529 -14.82798 -14.47663 -14.30326 -14.07413 -13.69270 -13.56711 -13.42469 -12.97863 -12.89778 -12.77736 -12.63507 -12.52710 -12.35718 -12.03728 -11.92964 -11.81985 -11.21174 -10.92794 -10.48334 -9.50666 -9.27465 -8.96125 -8.10457 -6.20886 -0.24063 0.09957 1.27645 1.45041 1.45656 1.53277 1.64221 2.44219 2.48355 3.02294 3.19355 3.37492 3.48367 3.62337 3.95277 4.04922 4.14780 4.17565 4.40539 4.47879 4.57017 4.67517 4.73352 4.80008 4.83080 4.90726 4.97319 5.02631 5.10051 5.12372 5.17040 5.37118 5.51552 5.63573 5.70186 5.77657 6.09381 6.16725 6.40564 6.62543 6.90379 7.47993 8.95299 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.034522 B = 0.003502 C = 0.003405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.883356 B = 7992.446461 C = 8221.346811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.217 3.783 3 H 0.019 0.981 4 C -0.517 4.517 5 H 0.056 0.944 6 C 0.015 3.985 7 N -0.918 5.918 8 Si 0.956 3.044 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.539 5.539 13 C 0.042 3.958 14 C 0.125 3.875 15 C 0.053 3.947 16 C -0.199 4.199 17 C -0.117 4.117 18 C -0.115 4.115 19 C 0.073 3.927 20 F -0.140 7.140 21 C -0.120 4.120 22 C -0.074 4.074 23 C 0.020 3.980 24 O -0.202 6.202 25 H 0.031 0.969 26 H 0.064 0.936 27 H 0.031 0.969 28 H 0.262 0.738 29 H 0.059 0.941 30 H 0.056 0.944 31 H 0.023 0.977 32 H 0.112 0.888 33 H 0.052 0.948 34 H 0.171 0.829 35 H 0.152 0.848 36 H 0.179 0.821 37 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.627 -5.141 18.469 19.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.110 3.890 3 H 0.037 0.963 4 C -0.556 4.556 5 H 0.074 0.926 6 C -0.183 4.183 7 N -0.558 5.558 8 Si 0.782 3.218 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.199 1.199 12 N -0.262 5.262 13 C -0.107 4.107 14 C -0.003 4.003 15 C 0.006 3.994 16 C -0.219 4.219 17 C -0.118 4.118 18 C -0.134 4.134 19 C 0.054 3.946 20 F -0.119 7.119 21 C -0.138 4.138 22 C -0.092 4.092 23 C -0.028 4.028 24 O -0.104 6.104 25 H 0.050 0.950 26 H 0.083 0.917 27 H 0.050 0.950 28 H 0.071 0.929 29 H 0.078 0.922 30 H 0.075 0.925 31 H 0.041 0.959 32 H 0.130 0.870 33 H 0.070 0.930 34 H 0.189 0.811 35 H 0.169 0.831 36 H 0.196 0.804 37 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 3.844 -5.175 18.288 19.391 hybrid contribution -0.362 -0.020 -0.996 1.060 sum 3.483 -5.195 17.292 18.388 Atomic orbital electron populations 1.22247 1.00030 0.99374 1.00505 1.19111 0.90226 0.93382 0.86266 0.96299 1.21323 1.30820 1.12583 0.90860 0.92618 1.25614 0.95349 0.95765 1.01616 1.69979 1.37660 1.24033 1.24140 0.85645 0.78700 0.78681 0.78793 1.19829 1.21012 1.19924 1.62324 1.59860 1.02713 1.01344 1.22174 0.97347 0.90117 1.01021 1.20688 0.97051 0.97846 0.84705 1.22403 0.94956 0.88813 0.93263 1.22408 0.96961 1.04841 0.97668 1.19837 0.95736 0.98518 0.97756 1.20558 0.99023 0.99787 0.94018 1.17510 0.86707 0.99302 0.91069 1.91496 1.56390 1.95622 1.68366 1.21179 0.91245 1.00287 1.01133 1.20091 1.00717 0.97080 0.91307 1.20132 0.89673 0.99998 0.92956 1.83981 1.43480 1.46668 1.36279 0.94994 0.91702 0.95020 0.92896 0.92190 0.92502 0.95853 0.87039 0.92980 0.81109 0.83053 0.80364 0.81513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.50 8.28 71.98 0.60 -6.91 16 2 C 0.22 10.49 2.34 44.17 0.10 10.59 16 3 H 0.02 1.01 8.03 -2.39 -0.02 0.99 16 4 C -0.52 -27.69 7.94 25.60 0.20 -27.49 16 5 H 0.06 3.00 6.75 -2.91 -0.02 2.98 16 6 C 0.02 0.83 5.30 84.66 0.45 1.28 16 7 N -0.92 -51.31 11.32 21.45 0.24 -51.07 16 8 Si 0.96 42.95 29.54 68.60 2.03 44.98 16 9 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 10 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 11 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 12 N -0.54 -22.24 4.73 -906.06 -4.29 -26.53 16 13 C 0.04 1.63 8.72 127.69 1.11 2.74 16 14 C 0.12 4.25 4.91 85.56 0.42 4.67 16 15 C 0.05 1.69 5.82 24.72 0.14 1.83 16 16 C -0.20 -5.80 11.01 23.54 0.26 -5.54 16 17 C -0.12 -3.20 6.39 -20.21 -0.13 -3.33 16 18 C -0.12 -2.65 10.07 22.48 0.23 -2.42 16 19 C 0.07 1.52 7.29 22.36 0.16 1.69 16 20 F -0.14 -2.92 17.26 44.97 0.78 -2.14 16 21 C -0.12 -2.04 9.99 22.34 0.22 -1.81 16 22 C -0.07 -1.44 10.06 22.33 0.22 -1.21 16 23 C 0.02 0.53 7.41 22.97 0.17 0.70 16 24 O -0.20 -6.27 9.82 -9.48 -0.09 -6.37 16 25 H 0.03 1.44 6.38 -2.39 -0.02 1.42 16 26 H 0.06 3.36 6.07 -2.39 -0.01 3.35 16 27 H 0.03 1.27 6.75 -2.38 -0.02 1.26 16 28 H 0.26 14.01 8.31 -92.71 -0.77 13.24 16 29 H 0.06 2.52 6.53 -2.39 -0.02 2.50 16 30 H 0.06 2.04 6.58 -2.39 -0.02 2.03 16 31 H 0.02 0.89 6.28 -2.39 -0.01 0.88 16 32 H 0.11 3.56 8.00 -2.39 -0.02 3.54 16 33 H 0.05 1.74 6.94 -2.39 -0.02 1.72 16 34 H 0.17 4.43 8.06 -2.91 -0.02 4.41 16 35 H 0.15 2.96 8.06 -2.91 -0.02 2.94 16 36 H 0.18 1.78 8.06 -2.91 -0.02 1.75 16 37 H 0.17 2.29 8.06 -2.91 -0.02 2.27 16 Total: -1.00 -59.52 308.38 3.92 -55.60 By element: Atomic # 1 Polarization: 9.65 SS G_CDS: 1.09 Total: 10.74 kcal Atomic # 6 Polarization: -29.37 SS G_CDS: 4.17 Total: -25.21 kcal Atomic # 7 Polarization: -73.55 SS G_CDS: -4.05 Total: -77.60 kcal Atomic # 8 Polarization: -6.27 SS G_CDS: -0.09 Total: -6.37 kcal Atomic # 9 Polarization: -2.92 SS G_CDS: 0.78 Total: -2.14 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.98 kcal Total: -59.52 3.92 -55.60 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093090452.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.141 kcal (2) G-P(sol) polarization free energy of solvation -59.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds