Wall clock time and date at job start Mon Mar 30 2020 01:52:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.34807 * 120.00230 * 2 1 4 4 C 1.46422 * 120.00028 * 179.97438 * 3 2 1 5 5 O 1.21694 * 120.00082 * 359.97438 * 4 3 2 6 6 N 1.34777 * 120.00224 * 180.02562 * 4 3 2 7 7 C 1.46495 * 120.00527 * 180.02562 * 6 4 3 8 8 H 1.09000 * 109.46878 * 325.00234 * 7 6 4 9 9 C 1.52999 * 109.47189 * 84.99483 * 7 6 4 10 10 C 1.50702 * 109.47455 * 204.99682 * 7 6 4 11 11 H 1.07996 * 119.99410 * 359.97438 * 10 7 6 12 12 C 1.37872 * 119.99770 * 179.97438 * 10 7 6 13 13 N 1.31514 * 120.00466 * 0.02562 * 12 10 7 14 14 Si 1.86812 * 119.99553 * 180.02562 * 12 10 7 15 15 H 1.48500 * 109.47022 * 0.02562 * 14 12 10 16 16 H 1.48501 * 109.46820 * 120.00222 * 14 12 10 17 17 H 1.48499 * 109.47053 * 240.00033 * 14 12 10 18 18 C 1.47215 * 119.99875 * 179.97438 * 2 1 3 19 19 C 1.39853 * 120.15752 * 115.02170 * 18 2 1 20 20 C 1.37876 * 119.87588 * 179.97438 * 19 18 2 21 21 C 1.38384 * 120.20079 * 359.97438 * 20 19 18 22 22 C 1.38593 * 120.32031 * 0.02562 * 21 20 19 23 23 F 1.35100 * 119.94188 * 180.02562 * 22 21 20 24 24 C 1.38146 * 120.11675 * 359.97438 * 22 21 20 25 25 H 1.08998 * 109.47120 * 270.00319 * 1 2 3 26 26 H 1.08997 * 109.46910 * 29.99980 * 1 2 3 27 27 H 1.08997 * 109.47219 * 150.00077 * 1 2 3 28 28 H 1.08004 * 119.99833 * 0.02562 * 3 2 1 29 29 H 0.97003 * 119.99470 * 359.97438 * 6 4 3 30 30 H 1.09004 * 109.47293 * 60.00706 * 9 7 6 31 31 H 1.09003 * 109.47103 * 180.02562 * 9 7 6 32 32 H 1.08996 * 109.47473 * 300.00255 * 9 7 6 33 33 H 0.97001 * 119.99897 * 179.97438 * 13 12 10 34 34 H 1.07993 * 120.06013 * 359.96003 * 19 18 2 35 35 H 1.07999 * 119.90179 * 180.02562 * 20 19 18 36 36 H 1.08003 * 119.84372 * 179.97438 * 21 20 19 37 37 H 1.08000 * 120.09776 * 180.27869 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1811 1.1674 0.0000 4 6 3.6454 1.1674 0.0006 5 8 4.2538 0.1135 0.0015 6 7 4.3193 2.3345 0.0011 7 6 5.7843 2.3346 0.0011 8 1 6.1476 1.4925 0.5901 9 6 6.2943 2.2094 -1.4359 10 6 6.2867 3.6220 0.6021 11 1 5.5849 4.3660 0.9489 12 6 7.6422 3.8500 0.7090 13 7 8.4968 2.9442 0.2862 14 14 8.2649 5.4457 1.4547 15 1 7.1099 6.2912 1.8499 16 1 9.0896 5.1437 2.6522 17 1 9.0903 6.1701 0.4551 18 6 2.2431 -1.2749 0.0006 19 6 3.0373 -1.6282 -1.0950 20 6 3.7246 -2.8234 -1.0881 21 6 3.6312 -3.6738 -0.0004 22 6 2.8466 -3.3320 1.0896 23 9 2.7613 -4.1677 2.1477 24 6 2.1523 -2.1377 1.0967 25 1 -0.3633 0.0001 1.0276 26 1 -0.3633 0.8900 -0.5138 27 1 -0.3633 -0.8900 -0.5138 28 1 1.6411 2.1028 0.0004 29 1 3.8343 3.1746 0.0007 30 1 5.9311 3.0515 -2.0251 31 1 7.3843 2.2089 -1.4359 32 1 5.9310 1.2782 -1.8706 33 1 9.4505 3.1048 0.3612 34 1 3.1120 -0.9661 -1.9449 35 1 4.3384 -3.0964 -1.9338 36 1 4.1717 -4.6089 -0.0013 37 1 1.5445 -1.8695 1.9482 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095394863.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:00 Heat of formation + Delta-G solvation = -45.231918 kcal Electronic energy + Delta-G solvation = -20998.792460 eV Core-core repulsion = 17655.752410 eV Total energy + Delta-G solvation = -3343.040050 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.122 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -48.66917 -39.56962 -38.13318 -35.19618 -34.34207 -32.36485 -30.48147 -29.82953 -29.19184 -27.38675 -25.25512 -23.42798 -22.34178 -21.65568 -19.70207 -19.00788 -17.59460 -16.38215 -16.09793 -15.90266 -15.69642 -15.35319 -15.14356 -14.38621 -14.08741 -13.73395 -13.58936 -13.39731 -13.26091 -12.84878 -12.43905 -12.31105 -12.19991 -11.85667 -11.64241 -11.47034 -11.08283 -10.96782 -10.85937 -10.70333 -10.30424 -10.24262 -9.40164 -9.05467 -8.98072 -8.66785 -8.55107 -7.92929 -7.83810 -6.12454 -4.21538 1.11505 1.52466 1.76243 3.23363 3.31197 3.33848 3.84292 3.98280 4.15873 4.39762 4.41380 4.71969 4.99694 5.13552 5.18660 5.20748 5.35454 5.41288 5.46036 5.58667 5.63737 5.78818 5.94999 6.19918 6.31230 6.40923 6.43077 6.58487 6.72546 6.83486 6.96222 7.14884 7.15705 7.47941 7.58424 7.70860 7.92834 8.15428 8.69704 8.79602 9.16640 9.46492 10.93567 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.021860 B = 0.004365 C = 0.004055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.594263 B = 6413.448849 C = 6903.094598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.029 4.029 3 C -0.188 4.188 4 C 0.521 3.479 5 O -0.542 6.542 6 N -0.703 5.703 7 C 0.264 3.736 8 H 0.049 0.951 9 C -0.145 4.145 10 C -0.533 4.533 11 H 0.061 0.939 12 C 0.066 3.934 13 N -0.883 5.883 14 Si 0.901 3.099 15 H -0.273 1.273 16 H -0.283 1.283 17 H -0.283 1.283 18 C -0.007 4.007 19 C -0.053 4.053 20 C -0.096 4.096 21 C -0.152 4.152 22 C 0.085 3.915 23 F -0.148 7.148 24 C -0.143 4.143 25 H 0.076 0.924 26 H 0.072 0.928 27 H 0.070 0.930 28 H 0.128 0.872 29 H 0.388 0.612 30 H 0.025 0.975 31 H 0.089 0.911 32 H 0.014 0.986 33 H 0.263 0.737 34 H 0.120 0.880 35 H 0.128 0.872 36 H 0.127 0.873 37 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.913 -7.253 -2.688 16.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.031 4.031 3 C -0.209 4.209 4 C 0.308 3.692 5 O -0.422 6.422 6 N -0.349 5.349 7 C 0.163 3.837 8 H 0.066 0.934 9 C -0.203 4.203 10 C -0.571 4.571 11 H 0.079 0.921 12 C -0.137 4.137 13 N -0.521 5.521 14 Si 0.728 3.272 15 H -0.197 1.197 16 H -0.209 1.209 17 H -0.209 1.209 18 C -0.008 4.008 19 C -0.071 4.071 20 C -0.114 4.114 21 C -0.171 4.171 22 C 0.066 3.934 23 F -0.127 7.127 24 C -0.162 4.162 25 H 0.095 0.905 26 H 0.091 0.909 27 H 0.089 0.911 28 H 0.146 0.854 29 H 0.220 0.780 30 H 0.044 0.956 31 H 0.108 0.892 32 H 0.033 0.967 33 H 0.073 0.927 34 H 0.138 0.862 35 H 0.146 0.854 36 H 0.145 0.855 37 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -14.224 -8.034 -2.657 16.550 hybrid contribution 0.353 1.345 0.675 1.546 sum -13.870 -6.688 -1.982 15.526 Atomic orbital electron populations 1.20880 0.90389 1.03177 1.02792 1.20944 0.95187 0.91746 0.95265 1.23165 0.94902 0.97825 1.05006 1.18353 0.87511 0.84962 0.78344 1.90837 1.70104 1.30396 1.50906 1.46493 1.10181 1.06718 1.71540 1.18725 0.73085 0.98017 0.93909 0.93351 1.22057 1.04345 0.96569 0.97370 1.21264 0.92082 1.02529 1.41269 0.92086 1.24888 0.96630 0.97022 0.95181 1.69914 1.02302 1.33910 1.45989 0.86405 0.78865 0.83003 0.78888 1.19746 1.20879 1.20869 1.18431 0.96172 0.92352 0.93804 1.21022 0.93622 0.94953 0.97543 1.20767 0.98808 0.93972 0.97901 1.21062 1.00726 1.01571 0.93713 1.17424 1.00895 0.89764 0.85312 1.91456 1.95258 1.70698 1.55254 1.20963 1.02384 0.93429 0.99403 0.90521 0.90863 0.91107 0.85393 0.78012 0.95585 0.89243 0.96690 0.92652 0.86158 0.85449 0.85458 0.85438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.03 10.02 36.01 0.36 -0.67 16 2 C -0.03 -0.38 5.49 -102.19 -0.56 -0.94 16 3 C -0.19 -2.72 9.68 -37.51 -0.36 -3.09 16 4 C 0.52 10.21 7.58 -12.97 -0.10 10.11 16 5 O -0.54 -12.26 11.86 5.19 0.06 -12.19 16 6 N -0.70 -14.55 5.06 -56.33 -0.29 -14.84 16 7 C 0.26 6.72 2.56 -69.08 -0.18 6.55 16 8 H 0.05 1.43 7.57 -51.93 -0.39 1.04 16 9 C -0.14 -3.58 9.26 37.16 0.34 -3.24 16 10 C -0.53 -14.17 8.73 -34.44 -0.30 -14.47 16 11 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 12 C 0.07 1.78 5.30 -17.82 -0.09 1.69 16 13 N -0.88 -25.02 11.32 55.43 0.63 -24.39 16 14 Si 0.90 20.71 29.54 -169.99 -5.02 15.69 16 15 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 16 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 17 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 18 C -0.01 -0.11 3.83 -105.07 -0.40 -0.51 16 19 C -0.05 -0.82 6.95 -39.11 -0.27 -1.09 16 20 C -0.10 -1.39 10.03 -39.66 -0.40 -1.79 16 21 C -0.15 -2.19 10.02 -39.40 -0.39 -2.58 16 22 C 0.09 1.31 7.29 -39.48 -0.29 1.02 16 23 F -0.15 -2.27 17.26 2.25 0.04 -2.23 16 24 C -0.14 -2.14 9.76 -39.04 -0.38 -2.52 16 25 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.07 0.54 8.08 -51.93 -0.42 0.12 16 27 H 0.07 0.58 8.11 -51.93 -0.42 0.16 16 28 H 0.13 1.44 8.06 -52.48 -0.42 1.02 16 29 H 0.39 6.95 8.52 -40.82 -0.35 6.60 16 30 H 0.02 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.09 2.42 6.07 -51.93 -0.32 2.10 16 32 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 34 H 0.12 1.83 8.05 -52.49 -0.42 1.40 16 35 H 0.13 1.55 8.06 -52.49 -0.42 1.13 16 36 H 0.13 1.55 8.06 -52.48 -0.42 1.12 16 37 H 0.13 1.68 8.06 -52.49 -0.42 1.26 16 LS Contribution 321.97 15.07 4.85 4.85 Total: -1.00 -30.89 321.97 -7.57 -38.46 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: -4.82 Total: 6.21 kcal Atomic # 6 Polarization: -8.53 SS G_CDS: -3.02 Total: -11.55 kcal Atomic # 7 Polarization: -39.57 SS G_CDS: 0.34 Total: -39.23 kcal Atomic # 8 Polarization: -12.26 SS G_CDS: 0.06 Total: -12.19 kcal Atomic # 9 Polarization: -2.27 SS G_CDS: 0.04 Total: -2.23 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -30.89 -7.57 -38.46 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095394863.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.769 kcal (2) G-P(sol) polarization free energy of solvation -30.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds