Wall clock time and date at job start Mon Mar 30 2020 01:52:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.34807 * 120.00230 * 2 1 4 4 C 1.46422 * 120.00028 * 179.97438 * 3 2 1 5 5 O 1.21694 * 120.00082 * 359.97438 * 4 3 2 6 6 N 1.34777 * 120.00224 * 180.02562 * 4 3 2 7 7 C 1.46495 * 120.00527 * 180.02562 * 6 4 3 8 8 H 1.09000 * 109.46878 * 325.00234 * 7 6 4 9 9 C 1.52999 * 109.47189 * 84.99483 * 7 6 4 10 10 C 1.50702 * 109.47455 * 204.99682 * 7 6 4 11 11 H 1.07996 * 119.99410 * 359.97438 * 10 7 6 12 12 C 1.37872 * 119.99770 * 179.97438 * 10 7 6 13 13 N 1.31514 * 120.00466 * 0.02562 * 12 10 7 14 14 Si 1.86812 * 119.99553 * 180.02562 * 12 10 7 15 15 H 1.48500 * 109.47022 * 0.02562 * 14 12 10 16 16 H 1.48501 * 109.46820 * 120.00222 * 14 12 10 17 17 H 1.48499 * 109.47053 * 240.00033 * 14 12 10 18 18 C 1.47215 * 119.99875 * 179.97438 * 2 1 3 19 19 C 1.39853 * 120.15752 * 115.02170 * 18 2 1 20 20 C 1.37876 * 119.87588 * 179.97438 * 19 18 2 21 21 C 1.38384 * 120.20079 * 359.97438 * 20 19 18 22 22 C 1.38593 * 120.32031 * 0.02562 * 21 20 19 23 23 F 1.35100 * 119.94188 * 180.02562 * 22 21 20 24 24 C 1.38146 * 120.11675 * 359.97438 * 22 21 20 25 25 H 1.08998 * 109.47120 * 270.00319 * 1 2 3 26 26 H 1.08997 * 109.46910 * 29.99980 * 1 2 3 27 27 H 1.08997 * 109.47219 * 150.00077 * 1 2 3 28 28 H 1.08004 * 119.99833 * 0.02562 * 3 2 1 29 29 H 0.97003 * 119.99470 * 359.97438 * 6 4 3 30 30 H 1.09004 * 109.47293 * 60.00706 * 9 7 6 31 31 H 1.09003 * 109.47103 * 180.02562 * 9 7 6 32 32 H 1.08996 * 109.47473 * 300.00255 * 9 7 6 33 33 H 0.97001 * 119.99897 * 179.97438 * 13 12 10 34 34 H 1.07993 * 120.06013 * 359.96003 * 19 18 2 35 35 H 1.07999 * 119.90179 * 180.02562 * 20 19 18 36 36 H 1.08003 * 119.84372 * 179.97438 * 21 20 19 37 37 H 1.08000 * 120.09776 * 180.27869 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1811 1.1674 0.0000 4 6 3.6454 1.1674 0.0006 5 8 4.2538 0.1135 0.0015 6 7 4.3193 2.3345 0.0011 7 6 5.7843 2.3346 0.0011 8 1 6.1476 1.4925 0.5901 9 6 6.2943 2.2094 -1.4359 10 6 6.2867 3.6220 0.6021 11 1 5.5849 4.3660 0.9489 12 6 7.6422 3.8500 0.7090 13 7 8.4968 2.9442 0.2862 14 14 8.2649 5.4457 1.4547 15 1 7.1099 6.2912 1.8499 16 1 9.0896 5.1437 2.6522 17 1 9.0903 6.1701 0.4551 18 6 2.2431 -1.2749 0.0006 19 6 3.0373 -1.6282 -1.0950 20 6 3.7246 -2.8234 -1.0881 21 6 3.6312 -3.6738 -0.0004 22 6 2.8466 -3.3320 1.0896 23 9 2.7613 -4.1677 2.1477 24 6 2.1523 -2.1377 1.0967 25 1 -0.3633 0.0001 1.0276 26 1 -0.3633 0.8900 -0.5138 27 1 -0.3633 -0.8900 -0.5138 28 1 1.6411 2.1028 0.0004 29 1 3.8343 3.1746 0.0007 30 1 5.9311 3.0515 -2.0251 31 1 7.3843 2.2089 -1.4359 32 1 5.9310 1.2782 -1.8706 33 1 9.4505 3.1048 0.3612 34 1 3.1120 -0.9661 -1.9449 35 1 4.3384 -3.0964 -1.9338 36 1 4.1717 -4.6089 -0.0013 37 1 1.5445 -1.8695 1.9482 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095394863.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:00 Heat of formation + Delta-G solvation = -63.162524 kcal Electronic energy + Delta-G solvation = -20999.569989 eV Core-core repulsion = 17655.752410 eV Total energy + Delta-G solvation = -3343.817579 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.122 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -49.86701 -40.92620 -39.49754 -36.80224 -35.69067 -34.27109 -31.67418 -31.27413 -30.58248 -28.53904 -27.33155 -24.61775 -23.50939 -23.28641 -21.39636 -20.30942 -19.10253 -17.84531 -17.50545 -17.18525 -17.08585 -16.85585 -16.56099 -15.96890 -15.58933 -15.05186 -14.78411 -14.69355 -14.37951 -14.31422 -13.77809 -13.74451 -13.44941 -13.08383 -13.00426 -12.88781 -12.84980 -12.68656 -12.57660 -12.27373 -12.12096 -11.90499 -11.08177 -10.79643 -10.60014 -10.21003 -9.87604 -9.53645 -9.18159 -8.17808 -6.35046 -0.03816 0.34923 0.61782 1.43353 1.44461 1.56446 2.36526 2.53124 2.68253 2.78132 3.12968 3.29299 3.64385 3.89920 4.03228 4.10637 4.23538 4.44235 4.47299 4.64353 4.75390 4.83649 4.85133 4.93988 5.07002 5.09240 5.12265 5.15293 5.32081 5.37073 5.44653 5.50831 5.60475 5.65986 5.73934 5.95835 6.01331 6.12263 6.74120 7.07347 7.33577 7.65698 8.88569 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.021860 B = 0.004365 C = 0.004055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.594263 B = 6413.448849 C = 6903.094598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.006 4.006 3 C -0.205 4.205 4 C 0.515 3.485 5 O -0.580 6.580 6 N -0.703 5.703 7 C 0.273 3.727 8 H -0.005 1.005 9 C -0.130 4.130 10 C -0.546 4.546 11 H 0.072 0.928 12 C 0.013 3.987 13 N -0.918 5.918 14 Si 0.971 3.029 15 H -0.259 1.259 16 H -0.285 1.285 17 H -0.278 1.278 18 C -0.023 4.023 19 C -0.069 4.069 20 C -0.105 4.105 21 C -0.158 4.158 22 C 0.068 3.932 23 F -0.150 7.150 24 C -0.151 4.151 25 H 0.095 0.905 26 H 0.096 0.904 27 H 0.079 0.921 28 H 0.166 0.834 29 H 0.403 0.597 30 H 0.038 0.962 31 H 0.063 0.937 32 H 0.013 0.987 33 H 0.265 0.735 34 H 0.117 0.883 35 H 0.146 0.854 36 H 0.147 0.853 37 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.971 -6.035 -2.498 18.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.009 4.009 3 C -0.226 4.226 4 C 0.305 3.695 5 O -0.463 6.463 6 N -0.352 5.352 7 C 0.169 3.831 8 H 0.013 0.987 9 C -0.189 4.189 10 C -0.584 4.584 11 H 0.090 0.910 12 C -0.186 4.186 13 N -0.557 5.557 14 Si 0.796 3.204 15 H -0.183 1.183 16 H -0.211 1.211 17 H -0.203 1.203 18 C -0.024 4.024 19 C -0.088 4.088 20 C -0.123 4.123 21 C -0.176 4.176 22 C 0.049 3.951 23 F -0.129 7.129 24 C -0.170 4.170 25 H 0.113 0.887 26 H 0.115 0.885 27 H 0.098 0.902 28 H 0.184 0.816 29 H 0.238 0.762 30 H 0.057 0.943 31 H 0.082 0.918 32 H 0.033 0.967 33 H 0.074 0.926 34 H 0.135 0.865 35 H 0.163 0.837 36 H 0.165 0.835 37 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -16.330 -6.803 -2.472 17.862 hybrid contribution 0.975 0.822 0.607 1.412 sum -15.355 -5.982 -1.865 16.584 Atomic orbital electron populations 1.21003 0.86705 1.04841 1.04352 1.21392 0.97434 0.90170 0.91855 1.23046 0.91449 1.00072 1.08016 1.19195 0.89742 0.83782 0.76819 1.90820 1.71557 1.31572 1.52351 1.46233 1.08315 1.08184 1.72421 1.18263 0.75975 0.95724 0.93098 0.98667 1.21855 1.02567 0.96987 0.97450 1.21602 0.92613 1.02937 1.41242 0.91000 1.25801 0.96917 1.00394 0.95529 1.70065 1.02580 1.35965 1.47089 0.85306 0.78436 0.78872 0.77769 1.18322 1.21098 1.20347 1.18770 0.96456 0.93420 0.93718 1.21172 0.94228 0.95429 0.97952 1.21060 0.98769 0.93801 0.98631 1.21337 1.00562 1.02380 0.93361 1.17673 1.01569 0.90198 0.85630 1.91445 1.95330 1.70775 1.55356 1.21187 1.02574 0.93294 0.99904 0.88693 0.88486 0.90210 0.81617 0.76223 0.94279 0.91818 0.96747 0.92626 0.86526 0.83654 0.83506 0.83837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.56 10.02 71.24 0.71 -0.85 16 2 C -0.01 -0.15 5.49 -18.29 -0.10 -0.25 16 3 C -0.21 -5.50 9.68 23.61 0.23 -5.27 16 4 C 0.51 20.07 7.58 86.37 0.66 20.73 16 5 O -0.58 -26.87 11.86 -4.33 -0.05 -26.92 16 6 N -0.70 -29.04 5.06 -450.35 -2.28 -31.32 16 7 C 0.27 14.22 2.56 44.25 0.11 14.33 16 8 H 0.00 -0.28 7.57 -2.39 -0.02 -0.30 16 9 C -0.13 -6.58 9.26 71.98 0.67 -5.91 16 10 C -0.55 -29.08 8.73 25.60 0.22 -28.86 16 11 H 0.07 3.59 7.74 -2.91 -0.02 3.56 16 12 C 0.01 0.73 5.30 84.65 0.45 1.17 16 13 N -0.92 -53.20 11.32 21.45 0.24 -52.95 16 14 Si 0.97 42.24 29.54 68.60 2.03 44.27 16 15 H -0.26 -10.62 7.11 99.48 0.71 -9.92 16 16 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 17 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 18 C -0.02 -0.69 3.83 -20.15 -0.08 -0.77 16 19 C -0.07 -2.16 6.95 22.57 0.16 -2.00 16 20 C -0.10 -3.03 10.03 22.22 0.22 -2.81 16 21 C -0.16 -4.51 10.02 22.39 0.22 -4.29 16 22 C 0.07 2.08 7.29 22.33 0.16 2.24 16 23 F -0.15 -4.55 17.26 44.97 0.78 -3.77 16 24 C -0.15 -4.40 9.76 22.62 0.22 -4.18 16 25 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 26 H 0.10 0.96 8.08 -2.39 -0.02 0.94 16 27 H 0.08 1.01 8.11 -2.39 -0.02 1.00 16 28 H 0.17 3.11 8.06 -2.91 -0.02 3.09 16 29 H 0.40 13.94 8.52 -92.71 -0.79 13.15 16 30 H 0.04 1.81 8.14 -2.38 -0.02 1.80 16 31 H 0.06 3.56 6.07 -2.39 -0.01 3.54 16 32 H 0.01 0.67 8.14 -2.39 -0.02 0.66 16 33 H 0.26 14.47 8.31 -92.71 -0.77 13.69 16 34 H 0.12 3.60 8.05 -2.91 -0.02 3.57 16 35 H 0.15 3.52 8.06 -2.91 -0.02 3.50 16 36 H 0.15 3.47 8.06 -2.91 -0.02 3.45 16 37 H 0.14 3.57 8.06 -2.91 -0.02 3.54 16 Total: -1.00 -68.73 321.97 4.86 -63.87 By element: Atomic # 1 Polarization: 23.25 SS G_CDS: 0.29 Total: 23.54 kcal Atomic # 6 Polarization: -20.56 SS G_CDS: 3.86 Total: -16.70 kcal Atomic # 7 Polarization: -82.24 SS G_CDS: -2.04 Total: -84.28 kcal Atomic # 8 Polarization: -26.87 SS G_CDS: -0.05 Total: -26.92 kcal Atomic # 9 Polarization: -4.55 SS G_CDS: 0.78 Total: -3.77 kcal Atomic # 14 Polarization: 42.24 SS G_CDS: 2.03 Total: 44.27 kcal Total: -68.73 4.86 -63.87 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095394863.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.707 kcal (2) G-P(sol) polarization free energy of solvation -68.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds