Wall clock time and date at job start Mon Mar 30 2020 01:51:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09001 * 109.46822 * 2 1 4 4 C 1.50701 * 109.47024 * 120.00041 * 2 1 3 5 5 H 1.08002 * 119.99531 * 119.99811 * 4 2 1 6 6 C 1.37878 * 120.00126 * 299.99981 * 4 2 1 7 7 N 1.31518 * 119.99892 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 119.99708 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47493 * 359.97438 * 8 6 4 10 10 H 1.48498 * 109.47126 * 120.00049 * 8 6 4 11 11 H 1.48503 * 109.47047 * 239.99842 * 8 6 4 12 12 N 1.46497 * 109.47003 * 240.00256 * 2 1 3 13 13 C 1.34777 * 120.00028 * 84.99835 * 12 2 1 14 14 O 1.21282 * 120.00324 * 5.20538 * 13 12 2 15 15 C 1.50701 * 120.00060 * 185.20362 * 13 12 2 16 16 C 1.50710 * 115.55028 * 65.72822 * 15 13 12 17 17 C 1.38266 * 119.98162 * 30.16527 * 16 15 13 18 18 C 1.38222 * 120.04942 * 179.72556 * 17 16 15 19 19 C 1.38223 * 120.02307 * 0.29200 * 18 17 16 20 20 C 1.38434 * 119.97686 * 359.97438 * 19 18 17 21 21 F 1.35096 * 120.02905 * 180.02562 * 20 19 18 22 22 C 1.38168 * 119.98785 * 210.43663 * 16 15 13 23 23 C 1.52997 * 117.49978 * 211.39987 * 15 13 12 24 24 C 1.52993 * 117.49996 * 280.06149 * 15 13 12 25 25 H 1.08996 * 109.46991 * 59.99747 * 1 2 3 26 26 H 1.09001 * 109.46822 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.46684 * 299.99763 * 1 2 3 28 28 H 0.96995 * 119.99359 * 179.97438 * 7 6 4 29 29 H 0.96998 * 120.00450 * 265.00364 * 12 2 1 30 30 H 1.08002 * 119.98172 * 0.02562 * 17 16 15 31 31 H 1.07995 * 119.99194 * 180.27633 * 18 17 16 32 32 H 1.08007 * 120.01342 * 179.97438 * 19 18 17 33 33 H 1.07999 * 120.01533 * 0.02562 * 22 16 15 34 34 H 1.09008 * 117.49905 * 215.00278 * 23 15 13 35 35 H 1.08993 * 117.50005 * 0.02562 * 23 15 13 36 36 H 1.09004 * 117.49876 * 359.97438 * 24 15 13 37 37 H 1.09001 * 117.50182 * 144.99288 * 24 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4828 7 7 0.9436 0.8302 2.6034 8 14 2.3226 -1.1196 4.0079 9 1 3.1475 -2.2864 3.6037 10 1 3.1473 -0.1859 4.8160 11 1 1.1679 -1.5867 4.8164 12 7 2.0184 -0.6905 -1.1962 13 6 2.1471 -0.0182 -2.3571 14 8 1.9495 1.1780 -2.3903 15 6 2.5364 -0.7526 -3.6141 16 6 1.5296 -1.7532 -4.1206 17 6 0.1807 -1.5517 -3.8935 18 6 -0.7442 -2.4656 -4.3623 19 6 -0.3211 -3.5853 -5.0536 20 6 1.0296 -3.7909 -5.2768 21 9 1.4443 -4.8846 -5.9528 22 6 1.9554 -2.8744 -4.8068 23 6 3.3563 0.0130 -4.6545 24 6 4.0179 -1.0797 -3.8111 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 0.7090 1.1613 3.4844 29 1 2.2490 -1.6317 -1.1528 30 1 -0.1509 -0.6771 -3.3536 31 1 -1.7979 -2.3050 -4.1882 32 1 -1.0439 -4.2995 -5.4195 33 1 3.0094 -3.0340 -4.9799 34 1 3.1676 -0.2070 -5.7053 35 1 3.6145 1.0478 -4.4296 36 1 4.7111 -0.7633 -3.0316 37 1 4.2645 -2.0186 -4.3069 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000115350592.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:49 Heat of formation + Delta-G solvation = -37.498796 kcal Electronic energy + Delta-G solvation = -21220.294567 eV Core-core repulsion = 17877.589851 eV Total energy + Delta-G solvation = -3342.704716 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.122 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -48.96749 -40.24729 -38.40419 -36.31022 -34.73258 -32.36293 -30.81341 -30.54567 -28.97109 -25.32444 -24.81707 -22.90748 -22.55056 -21.99166 -20.37651 -19.21476 -18.05150 -16.74459 -16.26451 -16.14443 -15.68562 -15.62902 -15.30172 -14.96135 -14.49266 -14.13296 -13.64252 -13.24102 -13.18522 -12.63039 -12.58417 -12.41476 -11.81528 -11.72203 -11.66128 -11.20785 -11.13591 -10.98695 -10.87607 -10.61998 -10.47143 -10.32200 -10.25248 -9.12953 -9.06652 -8.95484 -8.62385 -8.57018 -7.93792 -6.14501 -4.23410 1.06693 1.12966 3.13650 3.22625 3.30544 3.33285 3.41717 3.79998 4.04005 4.18543 4.35209 4.45392 4.64991 4.84064 4.93875 5.10088 5.15148 5.18146 5.27373 5.33134 5.60177 5.64850 5.85009 5.89142 6.00662 6.03710 6.14443 6.28999 6.45788 6.77995 6.81801 6.91457 7.10690 7.41125 7.53670 7.67507 7.88233 8.11959 8.63606 8.75660 9.07436 9.44209 10.91622 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.019910 B = 0.004740 C = 0.004469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.008081 B = 5905.619715 C = 6263.395352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.263 3.737 3 H 0.050 0.950 4 C -0.532 4.532 5 H 0.062 0.938 6 C 0.066 3.934 7 N -0.884 5.884 8 Si 0.901 3.099 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.699 5.699 13 C 0.541 3.459 14 O -0.548 6.548 15 C -0.126 4.126 16 C -0.005 4.005 17 C -0.111 4.111 18 C -0.084 4.084 19 C -0.159 4.159 20 C 0.097 3.903 21 F -0.143 7.143 22 C -0.154 4.154 23 C -0.134 4.134 24 C -0.158 4.158 25 H 0.012 0.988 26 H 0.027 0.973 27 H 0.091 0.909 28 H 0.264 0.736 29 H 0.390 0.610 30 H 0.132 0.868 31 H 0.134 0.866 32 H 0.133 0.867 33 H 0.137 0.863 34 H 0.101 0.899 35 H 0.109 0.891 36 H 0.106 0.894 37 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.604 -7.793 -14.671 16.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.161 3.839 3 H 0.068 0.932 4 C -0.570 4.570 5 H 0.080 0.920 6 C -0.137 4.137 7 N -0.521 5.521 8 Si 0.729 3.271 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.345 5.345 13 C 0.325 3.675 14 O -0.427 6.427 15 C -0.130 4.130 16 C -0.005 4.005 17 C -0.130 4.130 18 C -0.102 4.102 19 C -0.178 4.178 20 C 0.078 3.922 21 F -0.121 7.121 22 C -0.172 4.172 23 C -0.171 4.171 24 C -0.195 4.195 25 H 0.031 0.969 26 H 0.047 0.953 27 H 0.109 0.891 28 H 0.074 0.926 29 H 0.223 0.777 30 H 0.150 0.850 31 H 0.152 0.848 32 H 0.151 0.849 33 H 0.155 0.845 34 H 0.119 0.881 35 H 0.128 0.872 36 H 0.124 0.876 37 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 0.363 -6.850 -14.524 16.062 hybrid contribution 0.370 -1.182 0.829 1.490 sum 0.733 -8.032 -13.695 15.894 Atomic orbital electron populations 1.22084 0.98395 0.99172 1.00823 1.18790 0.90996 0.94097 0.79996 0.93239 1.21241 1.32368 1.13172 0.90262 0.92028 1.24882 0.94806 0.94938 0.99056 1.69910 1.35967 1.22458 1.23786 0.86396 0.78631 0.79535 0.82565 1.19741 1.20861 1.20865 1.46469 1.64261 1.13683 1.10110 1.19085 0.77975 0.86929 0.83549 1.90666 1.51738 1.14520 1.85788 1.20338 0.92858 1.01388 0.98387 1.18612 0.93074 0.92858 0.95994 1.21186 0.92137 1.00080 0.99556 1.21004 1.00198 0.92949 0.96080 1.21129 0.93988 1.00008 1.02645 1.17577 0.92939 0.85034 0.96673 1.91485 1.91048 1.51792 1.77796 1.20955 1.00016 0.94556 1.01704 1.23041 1.00116 0.98209 0.95724 1.23195 0.92361 1.00613 1.03372 0.96852 0.95348 0.89060 0.92624 0.77741 0.85017 0.84779 0.84882 0.84522 0.88063 0.87245 0.87576 0.87780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.55 9.26 37.16 0.34 -3.21 16 2 C 0.26 6.60 2.60 -69.08 -0.18 6.42 16 3 H 0.05 1.44 7.51 -51.93 -0.39 1.05 16 4 C -0.53 -13.98 8.73 -34.44 -0.30 -14.28 16 5 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 6 C 0.07 1.77 5.30 -17.82 -0.09 1.68 16 7 N -0.88 -24.66 11.32 55.43 0.63 -24.03 16 8 Si 0.90 20.54 29.54 -169.99 -5.02 15.52 16 9 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 10 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 11 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 12 N -0.70 -14.46 5.07 -54.93 -0.28 -14.74 16 13 C 0.54 10.67 5.88 -10.98 -0.06 10.61 16 14 O -0.55 -12.96 16.34 5.56 0.09 -12.87 16 15 C -0.13 -1.88 2.36 -156.81 -0.37 -2.25 16 16 C 0.00 -0.07 5.48 -104.63 -0.57 -0.64 16 17 C -0.11 -1.57 9.32 -39.58 -0.37 -1.94 16 18 C -0.08 -0.99 10.04 -39.59 -0.40 -1.38 16 19 C -0.16 -1.77 10.03 -39.51 -0.40 -2.17 16 20 C 0.10 1.17 7.30 -39.42 -0.29 0.89 16 21 F -0.14 -1.75 17.27 2.25 0.04 -1.71 16 22 C -0.15 -1.86 9.34 -39.51 -0.37 -2.23 16 23 C -0.13 -1.70 9.74 -26.70 -0.26 -1.96 16 24 C -0.16 -1.90 9.57 -26.70 -0.26 -2.15 16 25 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 26 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.09 2.43 6.07 -51.93 -0.32 2.11 16 28 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 29 H 0.39 7.30 8.54 -40.82 -0.35 6.95 16 30 H 0.13 2.08 7.34 -52.49 -0.39 1.70 16 31 H 0.13 1.27 8.06 -52.49 -0.42 0.84 16 32 H 0.13 1.18 8.06 -52.48 -0.42 0.76 16 33 H 0.14 1.41 5.94 -52.49 -0.31 1.10 16 34 H 0.10 1.08 8.14 -51.92 -0.42 0.65 16 35 H 0.11 1.50 8.00 -51.93 -0.42 1.09 16 36 H 0.11 1.32 8.14 -51.93 -0.42 0.89 16 37 H 0.10 1.00 6.10 -51.93 -0.32 0.68 16 LS Contribution 320.04 15.07 4.82 4.82 Total: -1.00 -29.84 320.04 -7.85 -37.70 By element: Atomic # 1 Polarization: 12.50 SS G_CDS: -4.56 Total: 7.94 kcal Atomic # 6 Polarization: -9.06 SS G_CDS: -3.57 Total: -12.63 kcal Atomic # 7 Polarization: -39.12 SS G_CDS: 0.35 Total: -38.77 kcal Atomic # 8 Polarization: -12.96 SS G_CDS: 0.09 Total: -12.87 kcal Atomic # 9 Polarization: -1.75 SS G_CDS: 0.04 Total: -1.71 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -29.84 -7.85 -37.70 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000115350592.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.197 kcal (2) G-P(sol) polarization free energy of solvation -29.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds