Wall clock time and date at job start Mon Mar 30 2020 01:51:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09001 * 109.46822 * 2 1 4 4 C 1.50701 * 109.47024 * 120.00041 * 2 1 3 5 5 H 1.08002 * 119.99531 * 119.99811 * 4 2 1 6 6 C 1.37878 * 120.00126 * 299.99981 * 4 2 1 7 7 N 1.31518 * 119.99892 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 119.99708 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47493 * 359.97438 * 8 6 4 10 10 H 1.48498 * 109.47126 * 120.00049 * 8 6 4 11 11 H 1.48503 * 109.47047 * 239.99842 * 8 6 4 12 12 N 1.46497 * 109.47003 * 240.00256 * 2 1 3 13 13 C 1.34777 * 120.00028 * 84.99835 * 12 2 1 14 14 O 1.21282 * 120.00324 * 5.20538 * 13 12 2 15 15 C 1.50701 * 120.00060 * 185.20362 * 13 12 2 16 16 C 1.50710 * 115.55028 * 65.72822 * 15 13 12 17 17 C 1.38266 * 119.98162 * 30.16527 * 16 15 13 18 18 C 1.38222 * 120.04942 * 179.72556 * 17 16 15 19 19 C 1.38223 * 120.02307 * 0.29200 * 18 17 16 20 20 C 1.38434 * 119.97686 * 359.97438 * 19 18 17 21 21 F 1.35096 * 120.02905 * 180.02562 * 20 19 18 22 22 C 1.38168 * 119.98785 * 210.43663 * 16 15 13 23 23 C 1.52997 * 117.49978 * 211.39987 * 15 13 12 24 24 C 1.52993 * 117.49996 * 280.06149 * 15 13 12 25 25 H 1.08996 * 109.46991 * 59.99747 * 1 2 3 26 26 H 1.09001 * 109.46822 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.46684 * 299.99763 * 1 2 3 28 28 H 0.96995 * 119.99359 * 179.97438 * 7 6 4 29 29 H 0.96998 * 120.00450 * 265.00364 * 12 2 1 30 30 H 1.08002 * 119.98172 * 0.02562 * 17 16 15 31 31 H 1.07995 * 119.99194 * 180.27633 * 18 17 16 32 32 H 1.08007 * 120.01342 * 179.97438 * 19 18 17 33 33 H 1.07999 * 120.01533 * 0.02562 * 22 16 15 34 34 H 1.09008 * 117.49905 * 215.00278 * 23 15 13 35 35 H 1.08993 * 117.50005 * 0.02562 * 23 15 13 36 36 H 1.09004 * 117.49876 * 359.97438 * 24 15 13 37 37 H 1.09001 * 117.50182 * 144.99288 * 24 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4828 7 7 0.9436 0.8302 2.6034 8 14 2.3226 -1.1196 4.0079 9 1 3.1475 -2.2864 3.6037 10 1 3.1473 -0.1859 4.8160 11 1 1.1679 -1.5867 4.8164 12 7 2.0184 -0.6905 -1.1962 13 6 2.1471 -0.0182 -2.3571 14 8 1.9495 1.1780 -2.3903 15 6 2.5364 -0.7526 -3.6141 16 6 1.5296 -1.7532 -4.1206 17 6 0.1807 -1.5517 -3.8935 18 6 -0.7442 -2.4656 -4.3623 19 6 -0.3211 -3.5853 -5.0536 20 6 1.0296 -3.7909 -5.2768 21 9 1.4443 -4.8846 -5.9528 22 6 1.9554 -2.8744 -4.8068 23 6 3.3563 0.0130 -4.6545 24 6 4.0179 -1.0797 -3.8111 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 0.7090 1.1613 3.4844 29 1 2.2490 -1.6317 -1.1528 30 1 -0.1509 -0.6771 -3.3536 31 1 -1.7979 -2.3050 -4.1882 32 1 -1.0439 -4.2995 -5.4195 33 1 3.0094 -3.0340 -4.9799 34 1 3.1676 -0.2070 -5.7053 35 1 3.6145 1.0478 -4.4296 36 1 4.7111 -0.7633 -3.0316 37 1 4.2645 -2.0186 -4.3069 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000115350592.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:48 Heat of formation + Delta-G solvation = -54.643017 kcal Electronic energy + Delta-G solvation = -21221.037996 eV Core-core repulsion = 17877.589851 eV Total energy + Delta-G solvation = -3343.448146 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.122 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -49.88739 -41.50838 -39.71270 -37.55271 -36.57978 -34.30550 -31.75162 -31.55936 -30.85073 -27.37312 -26.07534 -23.88839 -23.85688 -23.00528 -22.08254 -20.77284 -19.32377 -18.21394 -17.49314 -17.21920 -17.09628 -16.97856 -16.58137 -16.25667 -16.01109 -15.43498 -14.90447 -14.76086 -14.42968 -14.19081 -13.90114 -13.60412 -13.57374 -13.04183 -12.92363 -12.82503 -12.77066 -12.59049 -12.29794 -12.15097 -12.14377 -11.68361 -11.56762 -11.10840 -10.75365 -10.59856 -9.90262 -9.79208 -9.59691 -8.19020 -6.36236 0.10978 0.19828 1.43390 1.44590 1.56515 1.64578 2.29238 2.42263 2.51597 2.93413 3.11473 3.17808 3.43804 3.69690 3.78670 3.93887 4.02371 4.11791 4.19781 4.38909 4.57024 4.66924 4.73668 4.88478 4.90460 4.93598 5.03290 5.06787 5.10154 5.17368 5.32030 5.41409 5.49607 5.58935 5.66970 5.87297 5.88668 6.08168 6.70997 6.91689 7.30099 7.49054 8.87567 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.019910 B = 0.004740 C = 0.004469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.008081 B = 5905.619715 C = 6263.395352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.269 3.731 3 H -0.001 1.001 4 C -0.545 4.545 5 H 0.071 0.929 6 C 0.016 3.984 7 N -0.917 5.917 8 Si 0.972 3.028 9 H -0.261 1.261 10 H -0.283 1.283 11 H -0.278 1.278 12 N -0.695 5.695 13 C 0.541 3.459 14 O -0.596 6.596 15 C -0.142 4.142 16 C -0.012 4.012 17 C -0.135 4.135 18 C -0.082 4.082 19 C -0.152 4.152 20 C 0.092 3.908 21 F -0.142 7.142 22 C -0.147 4.147 23 C -0.129 4.129 24 C -0.135 4.135 25 H 0.012 0.988 26 H 0.040 0.960 27 H 0.067 0.933 28 H 0.266 0.734 29 H 0.402 0.598 30 H 0.103 0.897 31 H 0.154 0.846 32 H 0.159 0.841 33 H 0.159 0.841 34 H 0.128 0.872 35 H 0.092 0.908 36 H 0.100 0.900 37 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.386 -10.590 -15.764 19.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.166 3.834 3 H 0.017 0.983 4 C -0.583 4.583 5 H 0.089 0.911 6 C -0.184 4.184 7 N -0.555 5.555 8 Si 0.796 3.204 9 H -0.185 1.185 10 H -0.209 1.209 11 H -0.204 1.204 12 N -0.342 5.342 13 C 0.327 3.673 14 O -0.478 6.478 15 C -0.146 4.146 16 C -0.012 4.012 17 C -0.153 4.153 18 C -0.100 4.100 19 C -0.171 4.171 20 C 0.073 3.927 21 F -0.120 7.120 22 C -0.166 4.166 23 C -0.166 4.166 24 C -0.172 4.172 25 H 0.031 0.969 26 H 0.059 0.941 27 H 0.086 0.914 28 H 0.075 0.925 29 H 0.237 0.763 30 H 0.121 0.879 31 H 0.171 0.829 32 H 0.177 0.823 33 H 0.177 0.823 34 H 0.146 0.854 35 H 0.110 0.890 36 H 0.118 0.882 37 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 1.158 -9.681 -15.643 18.433 hybrid contribution 0.101 -0.270 1.120 1.156 sum 1.259 -9.951 -14.523 17.650 Atomic orbital electron populations 1.21877 0.98057 0.99452 0.99558 1.18388 0.91221 0.91937 0.81832 0.98281 1.21538 1.32553 1.13454 0.90794 0.91095 1.25777 0.94850 0.95553 1.02252 1.70054 1.37012 1.23886 1.24570 0.85299 0.78126 0.78503 0.78427 1.18498 1.20898 1.20361 1.46216 1.64446 1.14047 1.09475 1.19868 0.76295 0.86503 0.84591 1.90633 1.53542 1.16939 1.86671 1.20109 0.95132 1.02742 0.96574 1.18480 0.92390 0.93292 0.97060 1.21131 0.93210 1.00150 1.00837 1.21187 1.00807 0.92493 0.95482 1.21404 0.94323 0.99845 1.01496 1.17701 0.93351 0.85006 0.96612 1.91494 1.91079 1.51706 1.77755 1.21043 1.01212 0.93472 1.00834 1.23152 0.99037 0.97657 0.96756 1.23364 0.89569 1.01679 1.02574 0.96917 0.94086 0.91424 0.92517 0.76325 0.87915 0.82874 0.82314 0.82337 0.85356 0.88960 0.88160 0.84292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.60 9.26 71.98 0.67 -5.94 16 2 C 0.27 14.06 2.60 44.25 0.12 14.17 16 3 H 0.00 -0.04 7.51 -2.39 -0.02 -0.06 16 4 C -0.55 -28.96 8.73 25.60 0.22 -28.74 16 5 H 0.07 3.55 7.74 -2.91 -0.02 3.53 16 6 C 0.02 0.85 5.30 84.65 0.45 1.30 16 7 N -0.92 -52.49 11.32 21.45 0.24 -52.25 16 8 Si 0.97 41.98 29.54 68.60 2.03 44.01 16 9 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 10 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 11 H -0.28 -11.74 7.11 99.48 0.71 -11.03 16 12 N -0.69 -29.42 5.07 -446.08 -2.26 -31.68 16 13 C 0.54 21.98 5.88 87.66 0.52 22.50 16 14 O -0.60 -29.75 16.34 -3.04 -0.05 -29.80 16 15 C -0.14 -4.12 2.36 -53.67 -0.13 -4.25 16 16 C -0.01 -0.30 5.48 -19.87 -0.11 -0.41 16 17 C -0.13 -3.74 9.32 22.27 0.21 -3.54 16 18 C -0.08 -1.77 10.04 22.26 0.22 -1.55 16 19 C -0.15 -2.93 10.03 22.31 0.22 -2.71 16 20 C 0.09 1.94 7.30 22.38 0.16 2.10 16 21 F -0.14 -2.99 17.27 44.97 0.78 -2.21 16 22 C -0.15 -3.11 9.34 22.31 0.21 -2.90 16 23 C -0.13 -3.08 9.74 30.62 0.30 -2.79 16 24 C -0.14 -2.90 9.57 30.62 0.29 -2.61 16 25 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 26 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 27 H 0.07 3.74 6.07 -2.39 -0.01 3.73 16 28 H 0.27 14.33 8.31 -92.71 -0.77 13.56 16 29 H 0.40 14.98 8.54 -92.71 -0.79 14.19 16 30 H 0.10 3.41 7.34 -2.91 -0.02 3.39 16 31 H 0.15 2.62 8.06 -2.91 -0.02 2.60 16 32 H 0.16 2.21 8.06 -2.91 -0.02 2.19 16 33 H 0.16 2.55 5.94 -2.91 -0.02 2.53 16 34 H 0.13 2.37 8.14 -2.38 -0.02 2.35 16 35 H 0.09 2.54 8.00 -2.39 -0.02 2.52 16 36 H 0.10 2.31 8.14 -2.38 -0.02 2.29 16 37 H 0.14 2.03 6.10 -2.39 -0.01 2.01 16 Total: -1.00 -66.90 320.04 4.39 -62.51 By element: Atomic # 1 Polarization: 24.48 SS G_CDS: 0.31 Total: 24.78 kcal Atomic # 6 Polarization: -18.71 SS G_CDS: 3.35 Total: -15.36 kcal Atomic # 7 Polarization: -81.91 SS G_CDS: -2.02 Total: -83.93 kcal Atomic # 8 Polarization: -29.75 SS G_CDS: -0.05 Total: -29.80 kcal Atomic # 9 Polarization: -2.99 SS G_CDS: 0.78 Total: -2.21 kcal Atomic # 14 Polarization: 41.98 SS G_CDS: 2.03 Total: 44.01 kcal Total: -66.90 4.39 -62.51 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000115350592.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.867 kcal (2) G-P(sol) polarization free energy of solvation -66.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds