Wall clock time and date at job start Mon Mar 30 2020 01:45:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.62647 * 2 1 4 4 S 1.81890 * 109.63284 * 120.39526 * 2 1 3 5 5 C 1.82449 * 101.70447 * 68.55207 * 4 2 1 6 6 C 1.53249 * 108.57803 * 51.21430 * 5 4 2 7 7 N 1.46472 * 109.86065 * 298.01179 * 6 5 4 8 8 C 1.46902 * 111.00150 * 197.76448 * 7 6 5 9 9 C 1.50701 * 109.47117 * 298.37947 * 8 7 6 10 10 H 1.07997 * 120.00152 * 4.94002 * 9 8 7 11 11 C 1.37877 * 119.99719 * 184.94505 * 9 8 7 12 12 N 1.31517 * 119.99884 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 119.99954 * 179.97438 * 11 9 8 14 14 H 1.48494 * 109.47039 * 60.00170 * 13 11 9 15 15 H 1.48505 * 109.46968 * 180.02562 * 13 11 9 16 16 H 1.48506 * 109.47113 * 299.99868 * 13 11 9 17 17 C 1.46474 * 112.55540 * 72.65940 * 7 6 5 18 18 H 1.09004 * 109.33888 * 47.42437 * 17 7 6 19 19 C 1.50705 * 109.40456 * 167.22190 * 17 7 6 20 20 C 1.38236 * 119.99731 * 40.12376 * 19 17 7 21 21 C 1.38231 * 119.99600 * 179.76443 * 20 19 17 22 22 C 1.38236 * 120.00340 * 0.50813 * 21 20 19 23 23 C 1.38235 * 119.99628 * 359.74300 * 22 21 20 24 24 C 1.38227 * 119.99959 * 220.39814 * 19 17 7 25 25 H 1.08995 * 109.47133 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47360 * 59.99839 * 1 2 3 27 27 H 1.09004 * 109.46859 * 299.99621 * 1 2 3 28 28 H 1.09002 * 109.57723 * 291.49855 * 5 4 2 29 29 H 1.08996 * 109.77004 * 171.04314 * 5 4 2 30 30 H 1.08998 * 109.40593 * 177.89932 * 6 5 4 31 31 H 1.08997 * 109.34271 * 58.09059 * 6 5 4 32 32 H 1.09004 * 109.46552 * 58.37747 * 8 7 6 33 33 H 1.08999 * 109.47031 * 178.37069 * 8 7 6 34 34 H 0.97005 * 119.99908 * 179.97438 * 12 11 9 35 35 H 1.07997 * 120.00077 * 359.97438 * 20 19 17 36 36 H 1.08003 * 119.99601 * 180.22841 * 21 20 19 37 37 H 1.07995 * 120.00313 * 179.72276 * 22 21 20 38 38 H 1.08000 * 120.00112 * 179.97438 * 23 22 21 39 39 H 1.07997 * 120.00230 * 359.97438 * 24 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8961 1.0267 0.0000 4 16 2.1411 -0.8668 1.4777 5 6 1.6502 -2.5885 1.1264 6 6 2.1485 -2.9623 -0.2738 7 7 1.5187 -2.0968 -1.2736 8 6 1.6324 -2.6767 -2.6186 9 6 3.0876 -2.8068 -2.9880 10 1 3.8522 -2.5657 -2.2644 11 6 3.4429 -3.2337 -4.2500 12 7 2.5118 -3.5277 -5.1311 13 14 5.2466 -3.3944 -4.7083 14 1 5.9027 -4.3703 -3.8016 15 1 5.3606 -3.8673 -6.1114 16 1 5.9105 -2.0725 -4.5766 17 6 2.0448 -0.7301 -1.2451 18 1 3.1341 -0.7631 -1.2212 19 6 1.5931 0.0062 -2.4800 20 6 0.3075 -0.1682 -2.9572 21 6 -0.1083 0.5109 -4.0871 22 6 0.7647 1.3563 -4.7459 23 6 2.0519 1.5267 -4.2717 24 6 2.4662 0.8515 -3.1388 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 0.5138 0.8901 28 1 0.5641 -2.6734 1.1633 29 1 2.0951 -3.2565 1.8638 30 1 1.8948 -4.0015 -0.4831 31 1 3.2305 -2.8378 -0.3171 32 1 1.1651 -3.6614 -2.6303 33 1 1.1315 -2.0282 -3.3373 34 1 2.7618 -3.8277 -6.0191 35 1 -0.3730 -0.8324 -2.4453 36 1 -1.1139 0.3775 -4.4578 37 1 0.4412 1.8834 -5.6313 38 1 2.7342 2.1868 -4.7866 39 1 3.4718 0.9846 -2.7683 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000118421739.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:38 Heat of formation + Delta-G solvation = 34.680607 kcal Electronic energy + Delta-G solvation = -20491.367931 eV Core-core repulsion = 17718.006324 eV Total energy + Delta-G solvation = -2773.361607 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 277.120 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.55491 -37.04006 -33.44700 -32.48401 -30.90341 -30.42548 -29.21727 -26.81351 -25.16315 -23.04371 -21.98049 -21.77533 -21.21356 -19.11396 -16.95729 -15.92744 -15.85660 -15.22714 -14.98536 -14.60648 -14.43376 -14.20302 -13.56161 -13.38892 -12.95302 -12.73746 -12.55691 -12.25025 -11.92739 -11.83664 -11.62406 -11.23497 -11.10506 -11.02959 -10.88765 -10.70244 -10.46586 -10.38109 -10.03553 -9.94432 -9.72064 -9.18508 -8.49886 -8.21957 -7.94826 -7.42428 -7.26208 -6.04385 -4.11935 1.93945 2.03836 2.19371 2.84820 3.26580 3.31822 3.34308 4.36574 4.39186 4.68441 5.22105 5.28498 5.31792 5.40327 5.48550 5.49139 5.54396 5.62875 5.67703 5.75731 5.81807 6.09428 6.13857 6.15371 6.22977 6.28058 6.39723 6.56529 6.57208 6.59938 6.68226 7.00545 7.07833 7.16522 7.28612 7.51490 7.61624 7.84654 7.92823 8.17206 8.24051 8.95246 9.54219 11.00990 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.013825 B = 0.009241 C = 0.006547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2024.856401 B = 3029.408791 C = 4275.701905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.031 4.031 3 H 0.099 0.901 4 S -0.297 6.297 5 C -0.067 4.067 6 C 0.067 3.933 7 N -0.544 5.544 8 C 0.180 3.820 9 C -0.546 4.546 10 H 0.052 0.948 11 C 0.071 3.929 12 N -0.886 5.886 13 Si 0.883 3.117 14 H -0.278 1.278 15 H -0.287 1.287 16 H -0.277 1.277 17 C 0.140 3.860 18 H 0.059 0.941 19 C -0.045 4.045 20 C -0.083 4.083 21 C -0.131 4.131 22 C -0.126 4.126 23 C -0.127 4.127 24 C -0.104 4.104 25 H 0.071 0.929 26 H 0.067 0.933 27 H 0.050 0.950 28 H 0.085 0.915 29 H 0.096 0.904 30 H 0.081 0.919 31 H 0.047 0.953 32 H 0.025 0.975 33 H 0.057 0.943 34 H 0.262 0.738 35 H 0.127 0.873 36 H 0.113 0.887 37 H 0.110 0.890 38 H 0.112 0.888 39 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.218 7.240 6.664 10.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.160 4.160 3 H 0.118 0.882 4 S -0.069 6.069 5 C -0.216 4.216 6 C -0.063 4.063 7 N -0.268 5.268 8 C 0.056 3.944 9 C -0.585 4.585 10 H 0.070 0.930 11 C -0.132 4.132 12 N -0.524 5.524 13 Si 0.711 3.289 14 H -0.203 1.203 15 H -0.212 1.212 16 H -0.203 1.203 17 C 0.030 3.970 18 H 0.077 0.923 19 C -0.047 4.047 20 C -0.101 4.101 21 C -0.149 4.149 22 C -0.144 4.144 23 C -0.146 4.146 24 C -0.123 4.123 25 H 0.090 0.910 26 H 0.086 0.914 27 H 0.070 0.930 28 H 0.103 0.897 29 H 0.114 0.886 30 H 0.099 0.901 31 H 0.066 0.934 32 H 0.043 0.957 33 H 0.075 0.925 34 H 0.071 0.929 35 H 0.145 0.855 36 H 0.131 0.869 37 H 0.129 0.871 38 H 0.130 0.870 39 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -4.185 7.592 7.545 11.493 hybrid contribution 1.499 -0.804 -1.740 2.433 sum -2.686 6.788 5.805 9.327 Atomic orbital electron populations 1.22037 0.92891 1.03336 1.01435 1.23251 0.99428 1.00103 0.93190 0.88242 1.86647 1.79784 1.08657 1.31829 1.23648 1.04029 0.93199 1.00740 1.21979 0.97665 0.97773 0.88902 1.61731 1.55861 1.00385 1.08802 1.20065 0.96037 0.95205 0.83129 1.21601 0.93028 1.45739 0.98086 0.92958 1.24873 0.96868 0.95087 0.96402 1.69918 1.32325 1.44800 1.05396 0.86799 0.86070 0.78512 0.77534 1.20334 1.21249 1.20282 1.20432 0.97471 0.89362 0.89748 0.92289 1.19467 0.93742 0.95631 0.95881 1.20982 0.95870 0.97424 0.95860 1.21010 0.99442 0.97980 0.96462 1.20946 0.94249 0.99648 0.99542 1.20912 0.96065 1.00703 0.96880 1.20870 0.98692 0.96988 0.95733 0.91006 0.91450 0.93047 0.89655 0.88599 0.90109 0.93435 0.95681 0.92501 0.92851 0.85533 0.86887 0.87144 0.87031 0.86947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.99 8.00 37.16 0.30 -1.69 16 2 C -0.03 -0.48 2.96 -26.61 -0.08 -0.56 16 3 H 0.10 1.51 8.14 -51.93 -0.42 1.09 16 4 S -0.30 -4.71 21.85 -107.50 -2.35 -7.06 16 5 C -0.07 -1.02 6.35 37.29 0.24 -0.78 16 6 C 0.07 1.21 4.79 -3.93 -0.02 1.20 16 7 N -0.54 -10.61 3.17 -229.86 -0.73 -11.34 16 8 C 0.18 4.32 4.33 -4.97 -0.02 4.30 16 9 C -0.55 -14.34 7.80 -34.44 -0.27 -14.61 16 10 H 0.05 1.39 6.20 -52.49 -0.33 1.06 16 11 C 0.07 1.94 5.46 -17.82 -0.10 1.84 16 12 N -0.89 -25.42 13.29 55.43 0.74 -24.68 16 13 Si 0.88 21.31 29.54 -169.99 -5.02 16.29 16 14 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 15 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 16 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 17 C 0.14 2.59 1.31 -68.97 -0.09 2.50 16 18 H 0.06 1.24 7.08 -51.93 -0.37 0.87 16 19 C -0.05 -0.84 3.43 -104.62 -0.36 -1.20 16 20 C -0.08 -1.49 4.92 -39.58 -0.19 -1.69 16 21 C -0.13 -2.19 10.05 -39.58 -0.40 -2.59 16 22 C -0.13 -2.04 10.05 -39.58 -0.40 -2.44 16 23 C -0.13 -2.14 10.05 -39.58 -0.40 -2.54 16 24 C -0.10 -1.90 9.67 -39.59 -0.38 -2.28 16 25 H 0.07 1.09 6.68 -51.93 -0.35 0.75 16 26 H 0.07 0.96 5.66 -51.93 -0.29 0.67 16 27 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.08 1.23 7.55 -51.93 -0.39 0.84 16 29 H 0.10 1.27 8.14 -51.93 -0.42 0.85 16 30 H 0.08 1.49 7.89 -51.93 -0.41 1.08 16 31 H 0.05 0.95 6.91 -51.93 -0.36 0.59 16 32 H 0.03 0.66 8.04 -51.93 -0.42 0.24 16 33 H 0.06 1.45 4.76 -51.93 -0.25 1.21 16 34 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 35 H 0.13 2.26 6.75 -52.49 -0.35 1.90 16 36 H 0.11 1.63 8.06 -52.48 -0.42 1.21 16 37 H 0.11 1.50 8.06 -52.49 -0.42 1.08 16 38 H 0.11 1.61 8.06 -52.49 -0.42 1.18 16 39 H 0.11 1.95 8.03 -52.49 -0.42 1.53 16 LS Contribution 310.77 15.07 4.68 4.68 Total: -1.00 -27.94 310.77 -10.46 -38.40 By element: Atomic # 1 Polarization: 9.87 SS G_CDS: -5.61 Total: 4.26 kcal Atomic # 6 Polarization: -18.37 SS G_CDS: -2.17 Total: -20.54 kcal Atomic # 7 Polarization: -36.03 SS G_CDS: 0.01 Total: -36.03 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Atomic # 16 Polarization: -4.71 SS G_CDS: -2.35 Total: -7.06 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -27.94 -10.46 -38.40 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000118421739.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.077 kcal (2) G-P(sol) polarization free energy of solvation -27.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.396 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds